Current Issues in Molecular Biology最新文献

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Genetic Assessment and Positioning of Algerian Barley Landraces with Respect to Landraces from the Middle East and Europe Using RAPD and SSR Markers. 利用RAPD和SSR标记对阿尔及利亚大麦地方品种与中东和欧洲地方品种的遗传评价和定位。
IF 2.8 3区 生物学
Current Issues in Molecular Biology Pub Date : 2024-12-17 DOI: 10.3390/cimb46120852
Hamama Guetteche, Ali Jarrar, Sascha Wetters, Leila Rouabah, Abdelkader Rouabah, Abdelkader Benbelkacem, Ruzanna Sadoyan, Adnan Kanbar, Peter Nick
{"title":"Genetic Assessment and Positioning of Algerian Barley Landraces with Respect to Landraces from the Middle East and Europe Using RAPD and SSR Markers.","authors":"Hamama Guetteche, Ali Jarrar, Sascha Wetters, Leila Rouabah, Abdelkader Rouabah, Abdelkader Benbelkacem, Ruzanna Sadoyan, Adnan Kanbar, Peter Nick","doi":"10.3390/cimb46120852","DOIUrl":"10.3390/cimb46120852","url":null,"abstract":"<p><p>Landraces are a critical genetic resource for resilience breeding, offering solutions to prepare agriculture for the challenges posed by climate change. Their efficient utilisation depends on understanding their history and genetic relationships. The current study investigates the phylogenetic relationships of barley landraces from Algeria, varieties from the Near and Middle East, traditional landraces, and modern cultivars from Europe. Using a core set of 33 varieties, including the wild ancestor <i>Hordeum spontaneum</i> from Armenia, genetic diversity was analysed with Random Amplified Polymorphic DNA (RAPD) and Simple Sequence Repeat (SSR) markers spanning all barley chromosomes. Based on the SSR-based phylogeny, the Algerian varieties are well clustered with those from the Near East, while distinct from the European varieties. The findings from RAPD markers partially support these results. Using exclusively traditional landraces, where a region of origin can be defined, the SSR markers are analysed separately for each chromosome individually, and the resulting clades are represented by the respective region of origin. This strategy resolves qualitative differences in geographic resolution, depending on the chromosome. While marker HvB23D (chromosome 4) separated the wild <i>H. spontaneum</i> from all domesticated genotypes, markers Bmag19 and Hv13GIII (chromosome 3) reveal four distinct geographic clusters (Maghreb, Near and Middle East, West Europe, Central Europe). These biogeographic patterns suggest a model, where divergence of domesticated barley due to human activity interacted with introgression of individual chromosomes from wild barley, yielding adaptive diversity. These biogeographic patterns suggest a model in which the divergence of domesticated barley, driven by human activity, interacts with the introgression of chromosomes from wild barley, resulting in the creation of adaptive genetic diversity. Our research advances our knowledge of barley landraces' functional genomics and highlights their potential in molecular breeding, particularly for developing resilient varieties suited to diverse environmental conditions.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14226-14243"},"PeriodicalIF":2.8,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674917/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892735","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LncRNA Expression Profiles in C6 Ceramide Treatment Reveal lnc_025370 as a Promoter in Canine Mammary Carcinoma CHMp Cells Progression. LncRNA在C6神经酰胺治疗中的表达谱揭示lncr_025370是犬乳腺癌CHMp细胞进展的启动子
IF 2.8 3区 生物学
Current Issues in Molecular Biology Pub Date : 2024-12-16 DOI: 10.3390/cimb46120849
Hongxiu Diao, Fangying Zhao, Meijin Wu, Yan Zhang, Qianting Tao, Shichao Chen, Degui Lin
{"title":"LncRNA Expression Profiles in C6 Ceramide Treatment Reveal lnc_025370 as a Promoter in Canine Mammary Carcinoma CHMp Cells Progression.","authors":"Hongxiu Diao, Fangying Zhao, Meijin Wu, Yan Zhang, Qianting Tao, Shichao Chen, Degui Lin","doi":"10.3390/cimb46120849","DOIUrl":"10.3390/cimb46120849","url":null,"abstract":"<p><p>Canine mammary carcinomas (CMCs) represent the most prevalent form of cancer in female dogs, characterized by a high incidence and mortality rate. C6 ceramide is recognized for its multifaceted anti-cancer properties, yet its specific influence on CMCs remains to be elucidated. Long noncoding RNAs (lncRNAs), now recognized as functional \"dark matter\" in precision oncology, are particularly intriguing, with 44% of canine lncRNAs exhibiting tissue-specific expression. In this study, we performed a thorough analysis of lncRNA expression profiles to uncover the mechanisms behind C6 ceramide's anti-cancer activity in CHMp cells. Our findings reveal that C6 ceramide notably inhibits the proliferation of CHMp cells. RNA sequencing identified 4522 lncRNAs with expression changes following C6 ceramide treatment, of which 2936 were upregulated and 1586 were downregulated. Further investigation into Lnc_025370 showed that it is predominantly nuclear-localized and is significantly downregulated by C6 ceramide treatment. Functional studies discovered that overexpression of Lnc_025370 enhances the growth and metastatic capabilities of CHMp cells, which is associated with an increase in NRG1, and concurrently diminishes the anti-cancer effectiveness of C6 ceramide in vitro. Mouse xenograft models also showed that Lnc_025370 overexpression promotes tumor growth and Ki67 expression. Together, our results suggest that Lnc_025370 acts as a pivotal target mediator of C6 ceramide's anti-cancer effects, facilitating the malignant progression of CHMp cells.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14190-14203"},"PeriodicalIF":2.8,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674213/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892259","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome-Wide Identification, Expression and Interaction Analysis of GLN Gene Family in Soybean. 大豆GLN基因家族的全基因组鉴定、表达及互作分析。
IF 2.8 3区 生物学
Current Issues in Molecular Biology Pub Date : 2024-12-15 DOI: 10.3390/cimb46120847
Xin Hao, Yiyan Zhang, Hui Zhang, Gang Yang, Zhou Liu, Huiwei Lv, Xiaomei Zhou
{"title":"Genome-Wide Identification, Expression and Interaction Analysis of <i>GLN</i> Gene Family in Soybean.","authors":"Xin Hao, Yiyan Zhang, Hui Zhang, Gang Yang, Zhou Liu, Huiwei Lv, Xiaomei Zhou","doi":"10.3390/cimb46120847","DOIUrl":"10.3390/cimb46120847","url":null,"abstract":"<p><p>As a globally significant economic crop, the seed size of soybean (<i>Glycine max</i> [L.] Merr.) is jointly regulated by internal genetic factors and external environmental signals. This study discovered that the GLN family proteins in soybean are similar to the KIX-PPD-MYC transcriptional repressor complex in Arabidopsis, potentially influencing seed size by regulating the expression of the downstream gene <i>GIF1</i>. Additionally, β-1,3-glucanase (βGlu) plays a crucial role in antifungal activity, cell composition, flower development, pollen development, abiotic resistance, seed germination, and maturation in soybean. Through a detailed analysis of the structure, chromosomal localization, phylogenetic relationships, and expression situations in different tissues at different stages of the soybean <i>GLN</i> gene family members, this research certifies a theoretical foundation for subsequent research on the biological functions of <i>GLN</i> genes in soybean. This research incorporated a comprehensive genomic identification and expression analysis of the <i>GLN</i> gene family in soybean. The results indicate that the 109 soybean <i>GLN</i> genes are unevenly distributed across soybean chromosomes and exhibit diverse expression patterns in different tissues, suggesting they may have distinct functions in soybean morphogenesis. GO enrichment analysis shows that the <i>GLN</i> gene family may participate in a variety of biological activities, cellular components, and molecular biological processes, particularly in catalytic activity, cellular components, and metabolic processes. These findings provide important information for comprehending the role of the <i>GLN</i> gene family in soybean and offer potential targets for molecular breeding of soybean.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14154-14167"},"PeriodicalIF":2.8,"publicationDate":"2024-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674948/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessing the Influence of Low Doses of Sucrose on Memory Deficits in Fish Exposed to Common Insecticide Based on Fipronil and Pyriproxyfen. 以氟虫腈和吡丙醚为基础,评估低剂量蔗糖对暴露于普通杀虫剂的鱼的记忆缺陷的影响。
IF 2.8 3区 生物学
Current Issues in Molecular Biology Pub Date : 2024-12-15 DOI: 10.3390/cimb46120848
Viorica Rarinca, Luminita Diana Hritcu, Marian Burducea, Gabriel Plavan, Radu Lefter, Vasile Burlui, Laura Romila, Alin Ciobică, Elena Todirascu-Ciornea, Cristian-Alin Barbacariu
{"title":"Assessing the Influence of Low Doses of Sucrose on Memory Deficits in Fish Exposed to Common Insecticide Based on Fipronil and Pyriproxyfen.","authors":"Viorica Rarinca, Luminita Diana Hritcu, Marian Burducea, Gabriel Plavan, Radu Lefter, Vasile Burlui, Laura Romila, Alin Ciobică, Elena Todirascu-Ciornea, Cristian-Alin Barbacariu","doi":"10.3390/cimb46120848","DOIUrl":"10.3390/cimb46120848","url":null,"abstract":"<p><p>Although pesticides have been a constant concern for decades, in the last ten years, public discussions and scientific research have emphasized their impact on human health and the environment, drawing increased attention to the problems associated with their use. The association of environmental stressors such as pesticides with a sugar-rich diet can contribute to the growing global metabolic disease epidemic through overlapping mechanisms of insulin resistance, inflammation, and metabolic dysregulation. The main aim of this study was to evaluate the behavioral effects of the exposure of Silver crucian carp (<i>Carassius auratus gibelio</i>) to a commercial insecticide formulation containing fipronil, pyriproxyfen, and other additives, as well as sucrose and their mixtures. The behavioral responses in the T-test showed significant abnormalities in the exploratory activity evocative of memory deficits and an increased degree of anxiety in the groups of fish treated with the insecticide formulation and the mixture of the insecticide with sucrose. Aggression, quantified in the mirror-biting test, as biting and the frequency of approaches to the mirror contact zone, was significantly decreased only in the insecticide and sucrose group. All three groups showed behavioral changes reflective of toxicity, but only the combination of the two stress factors, environmental (insecticide) and metabolic (sucrose intake), resulted in pronounced memory alterations.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14168-14189"},"PeriodicalIF":2.8,"publicationDate":"2024-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674115/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892656","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative Effects of Vitamin D Supplementation on Oxidative Stress in Relapsing-Remitting Multiple Sclerosis. 补充维生素D对复发-缓解型多发性硬化症氧化应激的比较作用。
IF 2.8 3区 生物学
Current Issues in Molecular Biology Pub Date : 2024-12-14 DOI: 10.3390/cimb46120845
Martyna Lis, Natalia Niedziela, Jowita Adamczyk-Zostawa, Jolanta Zalejska-Fiolka, Jarosław Szczygieł, Agata Sowa, Agata Świętek, Monika Adamczyk-Sowa
{"title":"Comparative Effects of Vitamin D Supplementation on Oxidative Stress in Relapsing-Remitting Multiple Sclerosis.","authors":"Martyna Lis, Natalia Niedziela, Jowita Adamczyk-Zostawa, Jolanta Zalejska-Fiolka, Jarosław Szczygieł, Agata Sowa, Agata Świętek, Monika Adamczyk-Sowa","doi":"10.3390/cimb46120845","DOIUrl":"10.3390/cimb46120845","url":null,"abstract":"<p><p>Studies suggest that vitamin D (VitD) may reduce oxidative stress (OS) in multiple sclerosis (MS) patients. This study aimed to compare the effects of various VitD doses on OS in relapsing-remitting MS (RRMS). A 6-month supplementation was introduced using two doses of VitD: 2000 IU/day in the high-dose group (HD, <i>n</i> = 23) and 15,960 IU/month in the low-dose group (LD, <i>n</i> = 29). Significant differences in body weight, height, and age were found between groups. A significant increase in the level of VitD (25(OH)D) was noted in both groups (<i>p</i> < 0.01). A significant increase was observed in the levels of LF and MDA (<i>p</i> < 0.01) and a significant decrease in the concentrations of PSH (<i>p</i> < 0.01), CuZnSOD (<i>p</i> = 0.02), and TOS (<i>p</i> < 0.01). A significant positive correlation was observed between serum VitD and SOD (R = 0.38, <i>p</i> < 0.01) and MnSOD (R = 0.31, <i>p</i> < 0.05), as well as a significant negative correlation between serum VitD and MDA (R = -0.31, <i>p</i> = 0.05) at the beginning of the study. At the end of the study, a significant positive correlation was observed between serum VitD and SOD (R = 0.34, <i>p</i> < 0.05) and CuZnSOD (R = 0.51, <i>p</i> < 0.01). In RRMS patients, the VitD doses are probably insufficient to induce a beneficial effect on the pro- and antioxidant balance.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14119-14131"},"PeriodicalIF":2.8,"publicationDate":"2024-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674365/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Updates on the Activity, Efficacy and Emerging Mechanisms of Resistance to Cefiderocol. 头孢地罗的活性、疗效和新出现的耐药机制的最新进展。
IF 2.8 3区 生物学
Current Issues in Molecular Biology Pub Date : 2024-12-14 DOI: 10.3390/cimb46120846
Gabriele Bianco, Matteo Boattini, Monica Cricca, Lucia Diella, Milo Gatti, Luca Rossi, Michele Bartoletti, Vittorio Sambri, Caterina Signoretto, Rossella Fonnesu, Sara Comini, Paolo Gaibani
{"title":"Updates on the Activity, Efficacy and Emerging Mechanisms of Resistance to Cefiderocol.","authors":"Gabriele Bianco, Matteo Boattini, Monica Cricca, Lucia Diella, Milo Gatti, Luca Rossi, Michele Bartoletti, Vittorio Sambri, Caterina Signoretto, Rossella Fonnesu, Sara Comini, Paolo Gaibani","doi":"10.3390/cimb46120846","DOIUrl":"10.3390/cimb46120846","url":null,"abstract":"<p><p>In recent years, novel antimicrobials have been developed to counter the emergence of antimicrobial resistance and provide effective therapeutic options against multidrug-resistant (MDR) Gram-negative bacilli (GNB). Cefiderocol, a siderophore cephalosporin, represents a novel valuable antimicrobial drug for the treatment of infections caused by MDR-GNB. The mechanism of cefiderocol to penetrate through the outer membrane of bacterial cells, termed \"<i>Trojan horse</i>\", makes this antimicrobial drug unique and immune to the various resistance strategies adopted by GNB. Its broad spectrum of action, potent antibacterial activity, pharmacokinetics properties, safety, and tolerability make cefiderocol a key drug for the treatment of infections due to MDR strains. Although this novel antimicrobial molecule contributed to revolutionizing the therapeutic armamentarium against MDR-GNB, the recent emergence of cefiderocol-resistant strains has redefined its role in clinical practice and required new strategies to preserve its antibacterial activity. In this review, we provide an updated discussion regarding the mechanism of action, emerging mechanisms of resistance, pharmacokinetic/pharmacodynamic (PK/PD) properties, and efficacy data of cefiderocol against the major Gram-negative bacteria and future prospects.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14132-14153"},"PeriodicalIF":2.8,"publicationDate":"2024-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674395/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892815","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
HLA Class I (A and B) Allele Polymorphism in a Moroccan Population Infected with Hepatitis C Virus. 摩洛哥丙型肝炎病毒感染者HLA I类(A和B)等位基因多态性
IF 2.8 3区 生物学
Current Issues in Molecular Biology Pub Date : 2024-12-13 DOI: 10.3390/cimb46120842
Safa Machraoui, Abdelmalek Hakmaoui, Khaoula Errafii, Mehdi Knidiri, Lamiaa Essaadouni, Khadija Krati, Brahim Admou
{"title":"HLA Class I (A and B) Allele Polymorphism in a Moroccan Population Infected with Hepatitis C Virus.","authors":"Safa Machraoui, Abdelmalek Hakmaoui, Khaoula Errafii, Mehdi Knidiri, Lamiaa Essaadouni, Khadija Krati, Brahim Admou","doi":"10.3390/cimb46120842","DOIUrl":"10.3390/cimb46120842","url":null,"abstract":"<p><p>Hepatitis C virus (HCV) infection is one of the major health burdens worldwide. Its course depends on the virus itself and the host's immune responses. The latter are conditioned by immunogenetic factors, in particular human leukocyte antigens (HLAs), whose role in determining the outcome of infection varies according to populations and ethnic groups. The current study attempted to investigate the possible relationship between HLA-A and HLA-B allele polymorphism and its impacts on the clinical outcome of HCV for a better understanding of disease susceptibility and clearance. A cross-sectional and comparative study was carried out on 40 patients with hepatitis C and 100 ethnically matched healthy control subjects originating from southern Morocco. HLA class I alleles were typed using the high-resolution PCR-SSO method. The prevalence of certain HLA class I alleles differed significantly between HCV-infected individuals and healthy controls. In particular, HLA-A*02:01 was less prevalent in chronic HCV infection (<i>p</i> = 0.002), indicating a potential protective effect, while the higher prevalence of HLA-A*68:02, A*66:01 B*15:03, B*41:02, B*44:03, and B*50:01 in patients could indicate a predisposing factor. These findings support the association of these immunogenetic markers with HCV infection, indicating their possible role in determining clinical and genotype forms as well as the outcome of HCV infection. Thus, an in-depth analysis of these alleles could lead to a better understanding of HCV pathogenesis and potential targeted interventions.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14080-14094"},"PeriodicalIF":2.8,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674597/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892771","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
YBX1: A Multifunctional Protein in Senescence and Immune Regulation. YBX1:一种参与衰老和免疫调节的多功能蛋白。
IF 2.8 3区 生物学
Current Issues in Molecular Biology Pub Date : 2024-12-13 DOI: 10.3390/cimb46120841
Wenze Zhang, Ying Liu, Zhe Zhao, Yizhi Zhang, Yujuan Liang, Wanxia Wang
{"title":"YBX1: A Multifunctional Protein in Senescence and Immune Regulation.","authors":"Wenze Zhang, Ying Liu, Zhe Zhao, Yizhi Zhang, Yujuan Liang, Wanxia Wang","doi":"10.3390/cimb46120841","DOIUrl":"10.3390/cimb46120841","url":null,"abstract":"<p><p>The Y-box binding protein 1 (YBX1) is a multifunctional protein with a wide range of roles in cell biology. It plays a crucial role in immune modulation, senescence, and disease progression. This review presents a comprehensive analysis of the specific functions and mechanisms of YBX1 in these areas. Initially, YBX1 is shown to be closely associated with cellular senescence and impacts significant biological processes, including cell proliferation, damage repair, and metabolism. This suggests potential applications in the prevention and treatment of senescence-related diseases. Additionally, YBX1 regulates the immune response by controlling the function of immune cells and the expression of immune molecules. It is essential in maintaining immune system homeostasis and impacts the pathological process of various diseases, including tumors. Lastly, the diverse functions of the YBX1 protein make it a promising candidate for the development of innovative therapeutic strategies for diseases. Comprehensive research on its mechanisms could provide novel insights and approaches for the prevention, diagnosis, and treatment of related diseases.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14058-14079"},"PeriodicalIF":2.8,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11726992/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892817","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Analysis of Kinship and Population Genetic Structure of 53 Apricot Resources Based on Whole Genome Resequencing. 基于全基因组重测序的53种杏资源亲缘关系及群体遗传结构分析。
IF 2.8 3区 生物学
Current Issues in Molecular Biology Pub Date : 2024-12-13 DOI: 10.3390/cimb46120844
Qirui Xin, Jun Qing, Yanhong He
{"title":"Analysis of Kinship and Population Genetic Structure of 53 Apricot Resources Based on Whole Genome Resequencing.","authors":"Qirui Xin, Jun Qing, Yanhong He","doi":"10.3390/cimb46120844","DOIUrl":"10.3390/cimb46120844","url":null,"abstract":"<p><p>Based on the single nucleotide polymorphism (SNP) markers developed by whole genome resequencing (WGRS), the relationship and population genetic structure of 53 common apricot (<i>P. armeniaca</i>) varieties were analyzed to provide a theoretical basis for revealing the phylogenetic relationship and classification of the common apricot. WGRS was performed on 53 common apricot varieties, and high-quality SNP sites were obtained after alignment with the \"<i>Yinxiangbai</i>\" apricot genome as a reference. Phylogenetic analysis, G matrix analysis, principal component analysis, and population structure analysis were performed using Genome-wide Complex Trait Analysis (GCTA), FastTree, Admixture, and other software. The average comparison ratio between the sequencing results and the reference genome was 97.66%. After strict screening, 88,332,238 high-quality SNP sites were finally obtained. Based on the statistical SNP variation type, it was found that <i>LNLJX</i> had the largest number of variations (3,951,322) and the lowest base transition/base transversion ratio (ts/tv = 1.77), indicating that its gene exchange events occurred less frequently. Based on the SNP point estimation of the relationship and genetic distance between samples, the relationship between species was 1.41-0.01, among which <i>PLDJX</i> and <i>BK1</i> had the closest relationship of 1.41, and <i>YZH</i> and <i>LGWSX</i> had the farthest relationship of 0.01. The genetic distance between species was 0.00367-0.264344, the genetic distance between <i>HMX</i> and <i>JM</i> was the closest, and the genetic distance between <i>WYX</i> and <i>YX</i> was the farthest, which was the largest. Phylogenetic tree, PCA, and genetic structure analysis results all divided 53 common apricot varieties into four groups, and the classification results were consistent. The SNP markers mined using WGRS technology are useful not only to analyze the variation of common apricots, but also to effectively identify their kinship and genetic structure, which plays a critical role in the classification and utilization of common apricot germplasm resources.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14106-14118"},"PeriodicalIF":2.8,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674255/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892646","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Periplosides Extract from Cortex periplocae Improve Collagen Antibody-Induced Arthritis by Regulating Macrophage Polarization. 周舟苷提取物通过调节巨噬细胞极化改善胶原抗体诱导的关节炎。
IF 2.8 3区 生物学
Current Issues in Molecular Biology Pub Date : 2024-12-13 DOI: 10.3390/cimb46120843
Que Wang, Xiaoyu Xiong, Li Chen, Fenghua Zhu, Xiaoqian Yang, Weimin Zhao, Shijun He, Jianping Zuo, Zemin Lin
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