{"title":"High Efficiency Shear-Driven Nanofluidic System for Energy Conversion/Harvesting.","authors":"Le Zhou, Yanguang Zhou, Zhigang Li","doi":"10.1021/acs.jpcb.4c06142","DOIUrl":"10.1021/acs.jpcb.4c06142","url":null,"abstract":"<p><p>In this work, we propose a shear-driven nanofluidic system for energy harvesting/conversion. The system consists of a nanochannel formed by two parallel walls, where the lower wall is negatively charged, while the upper wall is neutral. The motion of the upper wall caused by a shear force drives the solution in the fluidic system to move, which generates an ionic current due to the migration of excess cations in the system. Molecular dynamics simulations demonstrate that the efficiency of the system is affected by the wall charge density, shearing stress, channel height, and binding energy of the walls. The effects of these factors on the efficiency are studied. In particular, it is shown that a high binding energy for the upper wall (e.g., hydrophilic wall) can reduce the flow slip at the upper wall and effectively transfer energy from the wall to the fluid. For the lower wall, a low binding energy, which corresponds to a hydrophobic wall, can reduce the friction at the wall, enhance the flow velocity, and improve the energy conversion efficiency. By varying these parameters, it is found that the maximum energy conversion efficiency of the system reaches 65.8%, which is the highest compared with previous systems. The underlying mechanisms are explained using the slip length at the walls, wall velocity, and charge density profiles. The system proposed in this work provides insights into the design of nanofluidic systems for energy harvesting/conversion.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142566366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Joseph O Watson, Ruth M Pollard, Mark T Sims, Marc K Etherington, Jonathan P Knowles
{"title":"A Modular Approach to Tuning Emissive <i>N</i>-Quinolyl Through-Space Charge Transfer States Using sp<sup>3</sup>-Scaffolds.","authors":"Joseph O Watson, Ruth M Pollard, Mark T Sims, Marc K Etherington, Jonathan P Knowles","doi":"10.1021/acs.jpcb.4c05220","DOIUrl":"10.1021/acs.jpcb.4c05220","url":null,"abstract":"<p><p>We have shown that palladium-catalyzed cascade processes provide modular access to rigid quinoline-containing tetracyclic amines. This modular approach enables fine-tuning of the through-space charge transfer (TSCT) state formation between the lone pair localized on the nitrogen atom in the cage moiety and the quinoline moiety by variation of both the intramolecular <i>N</i>-aryl distance and quinoline substitution. Decreasing this <i>N</i>-aryl distance enhances the formation of the TSCT species, giving control over the emission color and photoluminescence quantum yield. Methoxylation of the quinoline unit decreases the propensity of TSCT formation. The development of this structure-activity relationship provides great insight for TSCT formation with an impact on further understanding dimeric, excimeric, and exciplex species. This understanding is crucial for the work underpinning their use in biosensor applications, and the conclusions are of relevance to the broader field of photoluminescence.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142575451","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Gas Phase Reactions of Pristine and Single-Atom-Doped Copper and Silver Clusters: Probing Size-Dependent Stability and Novel Superatoms.","authors":"Qiuying Du, Zhixun Luo, Xiaopeng Xing, Jijun Zhao","doi":"10.1021/acs.jpclett.4c02582","DOIUrl":"10.1021/acs.jpclett.4c02582","url":null,"abstract":"<p><p>Gas phase reactions have been a subject of research interest, enabling reliable strategies to explore the stability and reactivity of metal clusters as well as to probe novel superatoms that form the building blocks to assemble new materials with tailored properties. Coinage metal clusters have attracted great research attention due to their simple electronic shell structures and rich photochemical and catalytic properties at relatively low cost. This perspective focuses on the recent progress made in studying the gas phase reactions of undamaged and single-atom-doped Cu<sub><i>n</i></sub><sup>±,0</sup> and Ag<sub><i>n</i></sub><sup>±,0</sup> clusters with O<sub>2</sub>, CO, and NO molecules. It covers various aspects, such as reaction mechanisms, relationships between structure and activity, control of reactivity by changing cluster size and composition, and the identification of novel superatoms (Cu<sub>18</sub><sup>-</sup>, Ag<sub>13</sub><sup>-</sup>, Ag<sub>17</sub><sup>-</sup>, and Ag<sub>15</sub>O<sup>+</sup>). Lastly, we provide a detailed account of the obstacles and prospective avenues for future research in order to establish a connection between these findings and nanocluster systems that have practical applications.</p>","PeriodicalId":62,"journal":{"name":"The Journal of Physical Chemistry Letters","volume":null,"pages":null},"PeriodicalIF":4.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142581021","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Neural Thermodynamic Integration: Free Energies from Energy-Based Diffusion Models.","authors":"Bálint Máté, François Fleuret, Tristan Bereau","doi":"10.1021/acs.jpclett.4c01958","DOIUrl":"10.1021/acs.jpclett.4c01958","url":null,"abstract":"<p><p>Thermodynamic integration (TI) offers a rigorous method for estimating free-energy differences by integrating over a sequence of interpolating conformational ensembles. However, TI calculations are computationally expensive and typically limited to coupling a small number of degrees of freedom due to the need to sample numerous intermediate ensembles with sufficient conformational-space overlap. In this work, we propose to perform TI along an alchemical pathway represented by a trainable neural network, which we term Neural TI. Critically, we parametrize a time-dependent Hamiltonian interpolating between the interacting and noninteracting systems and optimize its gradient using a score matching objective. The ability of the resulting energy-based diffusion model to sample all intermediate ensembles allows us to perform TI from a single reference calculation. We apply our method to Lennard-Jones fluids, where we report accurate calculations of the excess chemical potential, demonstrating that Neural TI reproduces the underlying changes in free energy without the need for simulations at interpolating Hamiltonians.</p>","PeriodicalId":62,"journal":{"name":"The Journal of Physical Chemistry Letters","volume":null,"pages":null},"PeriodicalIF":4.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142581024","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Probing Aromaticity with Supersonic Jet Spectroscopy: A Case Study on Furan, Thiophene, and Selenophene.","authors":"Akshay Kumar Sahu, Anant Ram Satpathi, Saiprakash Rout, Pranay Mohanty, Laxmipriya Dash, Himansu S Biswal","doi":"10.1021/acs.jpclett.4c02791","DOIUrl":"https://doi.org/10.1021/acs.jpclett.4c02791","url":null,"abstract":"<p><p>Aromaticity is a century-old concept that is even introduced in high school textbooks. However, the determination of the order of aromaticity of molecules as simple as furan, thiophene, and selenophene is still challenging. This work describes how different theoretical and experimental methods posit different aromaticity orders. To benchmark the theoretical results and arrive at a conclusion, mass-selective electronic and vibrational spectroscopy of these five-membered heterocycles under isolated supersonic-jet-cooled conditions was necessary. Since the aromaticity order can be unveiled from the magnitude of the electron density in the ring, we used hydrogen bonding as a probe. The experimental results revealed that selenophene forms the strongest π-hydrogen bond, suggesting that selenophene is the most aromatic, followed by thiophene and furan. It is concluded that gauge-including magnetically induced currents (GIMIC) and relative <sup>1</sup>H and <sup>13</sup>C NMR chemical shifts are better parameters to determine the aromaticity order in a similar class of molecules.</p>","PeriodicalId":62,"journal":{"name":"The Journal of Physical Chemistry Letters","volume":null,"pages":null},"PeriodicalIF":4.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142602156","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Developing Stapled Aptamers with a Constrained Conformation for Osteogenesis Imperfect Therapeutics.","authors":"Gubu Amu, Ge Zhang, Nannan Jing, Yuan Ma","doi":"10.1021/acs.jmedchem.4c01293","DOIUrl":"10.1021/acs.jmedchem.4c01293","url":null,"abstract":"<p><p>Despite the extensive development of aptamers in basic research, only a limited number have successfully progressed to clinical trials. This limitation is primarily attributed to the inherent instability of aptamers' conformation, resulting in low affinity, poor serum stability, and inconsistent potency, posing a significant challenge to their stabilization. Herein, we established a feasible strategy to develop staple aptamers using the predicted binding conformations and titration cross-linking (TTC) method. Through this strategy, we successfully synthesized various stapled sclerostin aptamers with over 70% yield. Importantly, we demonstrated that stapled aptamers significantly enhanced their affinity (approximately 20-fold) and serum stability (negligible degradation within 32 h). Moreover, in an osteogenesis imperfecta mouse model (<i>Col1a2</i><sup><i>+/G610C</i></sup> mice), the stapled aptamer (named c-0127OA) exhibited a potent antagonistic effect on sclerostin, leading to enhanced anabolic bone anabolic potential. Collectively, our established stapling strategy is effective in stabilizing aptamers' conformation, with c-0127OA emerging as a promising therapeutic candidate for osteogenesis imperfecta.</p>","PeriodicalId":46,"journal":{"name":"Journal of Medicinal Chemistry","volume":null,"pages":null},"PeriodicalIF":6.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142520341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Angelo Aguilar, Jiuling Yang, Yangbing Li, Donna McEachern, Liyue Huang, Stevenchoukry Razzouk, Shaomeng Wang
{"title":"Discovery of MD-265: A Potent MDM2 Degrader That Achieves Complete Tumor Regression and Improves Long-Term Survival of Mice with Leukemia.","authors":"Angelo Aguilar, Jiuling Yang, Yangbing Li, Donna McEachern, Liyue Huang, Stevenchoukry Razzouk, Shaomeng Wang","doi":"10.1021/acs.jmedchem.4c01818","DOIUrl":"10.1021/acs.jmedchem.4c01818","url":null,"abstract":"<p><p>MDM2 has been pursued as an attractive therapeutic target for human cancers. Herein, we describe our discovery of MD-265 as a promising PROTAC MDM2 degrader and extensive <i>in vitro</i> and <i>in vivo</i> evaluations of its therapeutic potential and mechanism of action. MD-265 effectively depleted MDM2 protein in cancer cells at concentrations as low as 1 nM, leading to strong activation of p53 in cancer cells carrying wild-type p53. It selectively inhibited the growth of wild-type p53 leukemia cell lines and showed no activity in mutated p53 lines. MD-265 achieved persistent tumor regression in a leukemia xenograft model without causing any signs of toxicity and dramatically improved survival of mice in a disseminated leukemia model even with a weekly administration. MD-265 displayed an excellent intravenous PK profile in mice, rats, and dogs. MD-265 is a promising MDM2 degrader for advanced preclinical development for the treatment of human cancers.</p>","PeriodicalId":46,"journal":{"name":"Journal of Medicinal Chemistry","volume":null,"pages":null},"PeriodicalIF":6.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142542872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yi-Zhi Han, Yi-Chuan Liu, Jian-Hui Lan, Ya-Lan Liu, Cong-Zhi Wang, Qun-Yan Wu, Xiang-Dong Ding, Xue Liu, Anastasia O Khudorozhkova, Michael V Laptev, Yury P Zaikov, Wei-Qun Shi
{"title":"Development of Neural Network Potentials for Studying Chemical Behaviors of La<sup>3+</sup>/Nd<sup>3+</sup> Ions in Molten LiCl-KCl-CsCl in Combination with Raman Spectroscopy.","authors":"Yi-Zhi Han, Yi-Chuan Liu, Jian-Hui Lan, Ya-Lan Liu, Cong-Zhi Wang, Qun-Yan Wu, Xiang-Dong Ding, Xue Liu, Anastasia O Khudorozhkova, Michael V Laptev, Yury P Zaikov, Wei-Qun Shi","doi":"10.1021/acs.jpcb.4c04750","DOIUrl":"10.1021/acs.jpcb.4c04750","url":null,"abstract":"<p><p>The chemistry of molten salts has attracted great research interest owing to their wide applications in diverse fields. In the pyrochemical reprocessing of spent nuclear fuel or molten salt nuclear reactors, lanthanide elements as the principal fission products bring about changes in the composition and properties of molten salts. Herein, we report a comprehensive study on the coordination chemistry of the representative trivalent lanthanide ions (La<sup>3+</sup>/Nd<sup>3+</sup>) in LiCl-KCl-CsCl using a multiscale strategy combining Raman spectroscopy, deep learning, and large-scale molecular dynamics (MD) simulations. The neural network potential (NNP)-based MD and Raman spectroscopy studies revealed that La<sup>3+</sup>/Nd<sup>3+</sup> ions prefer to form persistent octahedron complexes with the six-coordinated species as the dominant species at high temperatures. Compared to LaCl<sub>6</sub><sup>3-</sup>, NdCl<sub>6</sub><sup>3-</sup> shows higher stability with obviously longer lifetimes in LiCl-KCl-CsCl, as confirmed by the observed stronger interaction of Nd<sup>3+</sup>-Cl<sup>-</sup> pairs. The total and partial structure factors further indicated the formation of a more stable network structure in LiCl-KCl-CsCl containing NdCl<sub>3</sub>. Besides, the temperature exerts a larger influence on the local structures of the La<sup>3+</sup> species compared to the Nd<sup>3+</sup> analogues. According to the potential mean force calculations, the bond dissociation energies follow the order Ln-Cl > Li-Cl > K-Cl > Cs-Cl in LiCl-KCl-CsCl-LnCl<sub>3</sub>. The NNP-based large-scale MD simulations have been verified to be an efficient and powerful way in molten salt chemistry research.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142556665","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Medium-Range Structural Order as the Driver of Activated Dynamics and Complexity Reduction in Glass-Forming Liquids.","authors":"Baicheng Mei, Kenneth S Schweizer","doi":"10.1021/acs.jpcb.4c05488","DOIUrl":"10.1021/acs.jpcb.4c05488","url":null,"abstract":"<p><p>We analyze in depth the Elastically Collective Nonlinear Langevin Equation theory of activated dynamics in metastable liquids to establish that the predicted inter-relationships between the alpha relaxation time, local cage and collective elastic barriers, dynamic localization length, and shear modulus are causally related within the theory to the medium range order (MRO) static correlation length. The latter grows exponentially with density for metastable hard sphere fluids and as a nonuniversal inverse power law with temperature for supercooled liquids under isobaric conditions. The physical origin of predicted connections between the alpha time and other metrics of cage order and the thermodynamic inverse dimensionless compressibility is fully established. It is discovered that although kinetic constraints from the real space first coordination shell are important for the alpha time, they are of secondary importance compared to the consequences of the more universal MRO correlations in both the modestly and deeply metastable regimes. This understanding sheds new light on the theoretical basis for, and prior successes of, the predictive mapping of chemically complex thermal liquids to effective hard sphere fluids based on matching their dimensionless compressibilities, a scheme we call \"complexity reduction\". In essence, the latter is equivalent to the physical requirement that the thermal liquid MRO correlation equals that of its effective hard sphere analog. The mapping alone is shown to provide a remarkable level of quantitative predictive power for the glass transition temperature <i>T</i><sub>g</sub> of 21 molecular and polymer liquids. Predictions for the chemically specific absolute magnitude and growth with cooling of the MRO correlation length are obtained and lie in the window of 2-6 nm at <i>T</i><sub>g</sub>. Dynamic heterogeneity, elastic facilitation, and beyond pair structure issues are briefly discussed. Future opportunities to theoretically analyze the equilibrated deep glass regime are outlined.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142556669","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sapna Waghmare, Umarfaruk S Sayyad, Arunavo Chatterjee, Somen Mondal
{"title":"Modulation of the Chirality and Dynamics of Self-Assembled Nanocellulose-Chiral C-Dot Film for Chiral Sensing Applications.","authors":"Sapna Waghmare, Umarfaruk S Sayyad, Arunavo Chatterjee, Somen Mondal","doi":"10.1021/acs.jpclett.4c02564","DOIUrl":"10.1021/acs.jpclett.4c02564","url":null,"abstract":"<p><p>The detection and sensing of chirality using chiral biomaterials are growing areas of research in advanced bioelectronics. As a result, chiral-controlled biomaterials are crucial for advancing current technologies in chiral sensing applications within biosystems. A chiral carbon dot (C-dot) modulated self-assembled emissive cellulose nanocrystal (CNC) film is developed where the chirality of the CNC film can be tempered between left-handed and right-handed chirality after being doped with chiral L/D-C-dots in CNCs (C-dot-CNC film), transferring the chirality from C-dots to CNCs. The interaction between C-dots, CNCs, and carrier dynamics is investigated using a variety of steady-state and time-resolved PL spectroscopy techniques. The chiral C-dot enhanced the protonic conductivity across the CNC via the formation of hydrogen bonds with its surface functional groups and water molecules. Further, the chiral CNC-C-dots photoelectrodes demonstrate an excellent ability to distinguish between left-handed and right-handed small molecules. These findings on the underlying mechanism of spin selectivity between chiral CNC-C-dot and chiral ligand hold promise for the development of efficient chiral-sensing electronic devices.</p>","PeriodicalId":62,"journal":{"name":"The Journal of Physical Chemistry Letters","volume":null,"pages":null},"PeriodicalIF":4.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142566367","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}