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Protein expression, characterization and activity comparisons of wild type and mutant DUSP5 proteins. 野生型与突变型DUSP5蛋白的表达、特性及活性比较。
BMC Biochemistry Pub Date : 2014-12-18 DOI: 10.1186/s12858-014-0027-0
Jaladhi Nayak, Adam J Gastonguay, Marat R Talipov, Padmanabhan Vakeel, Elise A Span, Kelsey S Kalous, Raman G Kutty, Davin R Jensen, Phani Raj Pokkuluri, Daniel S Sem, Rajendra Rathore, Ramani Ramchandran
{"title":"Protein expression, characterization and activity comparisons of wild type and mutant DUSP5 proteins.","authors":"Jaladhi Nayak,&nbsp;Adam J Gastonguay,&nbsp;Marat R Talipov,&nbsp;Padmanabhan Vakeel,&nbsp;Elise A Span,&nbsp;Kelsey S Kalous,&nbsp;Raman G Kutty,&nbsp;Davin R Jensen,&nbsp;Phani Raj Pokkuluri,&nbsp;Daniel S Sem,&nbsp;Rajendra Rathore,&nbsp;Ramani Ramchandran","doi":"10.1186/s12858-014-0027-0","DOIUrl":"https://doi.org/10.1186/s12858-014-0027-0","url":null,"abstract":"<p><strong>Background: </strong>The mitogen-activated protein kinases (MAPKs) pathway is critical for cellular signaling, and proteins such as phosphatases that regulate this pathway are important for normal tissue development. Based on our previous work on dual specificity phosphatase-5 (DUSP5), and its role in embryonic vascular development and disease, we hypothesized that mutations in DUSP5 will affect its function.</p><p><strong>Results: </strong>In this study, we tested this hypothesis by generating full-length glutathione-S-transferase-tagged DUSP5 and serine 147 proline mutant (S147P) proteins from bacteria. Light scattering analysis, circular dichroism, enzymatic assays and molecular modeling approaches have been performed to extensively characterize the protein form and function. We demonstrate that both proteins are active and, interestingly, the S147P protein is hypoactive as compared to the DUSP5 WT protein in two distinct biochemical substrate assays. Furthermore, due to the novel positioning of the S147P mutation, we utilize computational modeling to reconstruct full-length DUSP5 and S147P to predict a possible mechanism for the reduced activity of S147P.</p><p><strong>Conclusion: </strong>Taken together, this is the first evidence of the generation and characterization of an active, full-length, mutant DUSP5 protein which will facilitate future structure-function and drug development-based studies.</p>","PeriodicalId":9113,"journal":{"name":"BMC Biochemistry","volume":"15 ","pages":"27"},"PeriodicalIF":0.0,"publicationDate":"2014-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12858-014-0027-0","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32916690","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
The promoter of cell growth- and RNA protection-associated SND1 gene is activated by endoplasmic reticulum stress in human hepatoma cells. 人肝癌细胞内质网应激激活细胞生长和RNA保护相关SND1基因的启动子。
BMC Biochemistry Pub Date : 2014-12-11 DOI: 10.1186/s12858-014-0025-2
Sandra Armengol, Enara Arretxe, Leire Enzunza, Sarai Mula, Begoña Ochoa, Yolanda Chico, María José Martínez
{"title":"The promoter of cell growth- and RNA protection-associated SND1 gene is activated by endoplasmic reticulum stress in human hepatoma cells.","authors":"Sandra Armengol,&nbsp;Enara Arretxe,&nbsp;Leire Enzunza,&nbsp;Sarai Mula,&nbsp;Begoña Ochoa,&nbsp;Yolanda Chico,&nbsp;María José Martínez","doi":"10.1186/s12858-014-0025-2","DOIUrl":"https://doi.org/10.1186/s12858-014-0025-2","url":null,"abstract":"<p><strong>Background: </strong>Staphyloccocal nuclease domain-containing protein 1 (SND1) is involved in the regulation of gene expression and RNA protection. While numerous studies have established that SND1 protein expression is modulated by cellular stresses associated with tumor growth, hypoxia, inflammation, heat-shock and oxidative conditions, little is known about the factors responsible for SND1 expression. Here, we have approached this question by analyzing the transcriptional response of human SND1 gene to pharmacological endoplasmic reticulum (ER) stress in liver cancer cells.</p><p><strong>Results: </strong>We provide first evidence that SND1 promoter activity is increased in human liver cancer cells upon exposure to thapsigargin or tunicamycin or by ectopic expression of ATF6, a crucial transcription factor in the unfolded protein response triggered by ER stress. Deletion analysis of the 5'-flanking region of SND1 promoter identified maximal activation in fragment (-934, +221), which contains most of the predicted ER stress response elements in proximal promoter. Quantitative real-time PCR revealed a near 3 fold increase in SND1 mRNA expression by either of the stress-inducers; whereas SND1 protein was maximally upregulated (3.4-fold) in cells exposed to tunicamycin, a protein glycosylation inhibitor.</p><p><strong>Conclusion: </strong>Promoter activity of the cell growth- and RNA-protection associated SND1 gene is up-regulated by ER stress in human hepatoma cells.</p>","PeriodicalId":9113,"journal":{"name":"BMC Biochemistry","volume":"15 ","pages":"25"},"PeriodicalIF":0.0,"publicationDate":"2014-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12858-014-0025-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32896510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
ADP-Ribosylargininyl reaction of cholix toxin is mediated through diffusible intermediates. 胆毒素的adp -核糖体精氨酸反应是通过扩散中间体介导的。
BMC Biochemistry Pub Date : 2014-12-11 DOI: 10.1186/s12858-014-0026-1
Vicky M-H Sung, Chia-Lun Tsai
{"title":"ADP-Ribosylargininyl reaction of cholix toxin is mediated through diffusible intermediates.","authors":"Vicky M-H Sung,&nbsp;Chia-Lun Tsai","doi":"10.1186/s12858-014-0026-1","DOIUrl":"https://doi.org/10.1186/s12858-014-0026-1","url":null,"abstract":"<p><strong>Background: </strong>Cholix toxin is an ADP-ribosyltransferase found in non-O1/non-O139 strains of Vibrio cholera. The catalytic fragment of cholix toxin was characterized as a diphthamide dependent ADP-ribosyltransferase.</p><p><strong>Results: </strong>Our studies on the enzymatic activity of cholix toxin catalytic fragment show that the transfer of ADP-ribose to toxin takes place by a predominantly intramolecular mechanism and results in the preferential alkylation of arginine residues proximal to the NAD+ binding pocket. Multiple arginine residues, located near the catalytic site and at distal sites, can be the ADP-ribose acceptor in the auto-reaction. Kinetic studies of a model enzyme, M8, showed that a diffusible intermediate preferentially reacted with arginine residues in proximity to the NAD+ binding pocket. ADP-ribosylarginine activity of cholix toxin catalytic fragment could also modify exogenous substrates. Auto-ADP-ribosylation of cholix toxin appears to have negatively regulatory effect on ADP-ribosylation of exogenous substrate. However, at the presence of both endogenous and exogenous substrates, ADP-ribosylation of exogenous substrates occurred more efficiently than that of endogenous substrates.</p><p><strong>Conclusions: </strong>We discovered an ADP-ribosylargininyl activity of cholix toxin catalytic fragment from our studies in auto-ADP-ribosylation, which is mediated through diffusible intermediates. The lifetime of the hypothetical intermediate exceeds recorded and predicted lifetimes for the cognate oxocarbenium ion. Therefore, a diffusible strained form of NAD+ intermediate was proposed to react with arginine residues in a proximity dependent manner.</p>","PeriodicalId":9113,"journal":{"name":"BMC Biochemistry","volume":"15 ","pages":"26"},"PeriodicalIF":0.0,"publicationDate":"2014-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12858-014-0026-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32896900","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Phosphorylation in intrinsically disordered regions regulates the activity of Neurogenin2. 内在紊乱区域的磷酸化调节Neurogenin2的活性。
BMC Biochemistry Pub Date : 2014-11-06 DOI: 10.1186/s12858-014-0024-3
Gary S McDowell, Christopher J Hindley, Guy Lippens, Isabelle Landrieu, Anna Philpott
{"title":"Phosphorylation in intrinsically disordered regions regulates the activity of Neurogenin2.","authors":"Gary S McDowell,&nbsp;Christopher J Hindley,&nbsp;Guy Lippens,&nbsp;Isabelle Landrieu,&nbsp;Anna Philpott","doi":"10.1186/s12858-014-0024-3","DOIUrl":"https://doi.org/10.1186/s12858-014-0024-3","url":null,"abstract":"<p><strong>Background: </strong>Neuronal differentiation is largely under the control of basic Helix-Loop-Helix (bHLH) proneural transcription factors that play key roles during development of the embryonic nervous system. In addition to well-characterised regulation of their expression, increasing evidence is emerging for additional post-translational regulation of proneural protein activity. Of particular interest is the bHLH proneural factor Neurogenin2 (Ngn2), which orchestrates progression from neural progenitor to differentiated neuron in several regions of the central nervous system. Previous studies have demonstrated a key role for cell cycle-dependent multi-site phosphorylation of Ngn2 protein at Serine-Proline (SP) sites for regulation of its neuronal differentiation activity, although the potential structural and functional consequences of phosphorylation at different regions of the protein are unclear.</p><p><strong>Results: </strong>Here we characterise the role of phosphorylation of specific regions of Ngn2 on the stability of Ngn2 protein and on its neuronal differentiation activity in vivo in the developing embryo, demonstrating clearly that the location of SP sites is less important than the number of SP sites available for control of Ngn2 activity in vivo. We also provide structural evidence that Ngn2 contains large, intrinsically disordered regions that undergo phosphorylation by cyclin-dependent kinases (cdks).</p><p><strong>Conclusions: </strong>Phosphorylation of Ngn2 occurs in both the N- and C-terminal regions, either side of the conserved basic Helix-Loop-Helix domain. While these phosphorylation events do not change the intrinsic stability of Ngn2, phosphorylation on multiple sites acts to limit its ability to drive neuronal differentiation in vivo. Phosphorylated regions of Ngn2 are predicted to be intrinsically disordered and cdk-dependent phosphorylation of these intrinsically disordered regions contributes to Ngn2 regulation.</p>","PeriodicalId":9113,"journal":{"name":"BMC Biochemistry","volume":"15 ","pages":"24"},"PeriodicalIF":0.0,"publicationDate":"2014-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12858-014-0024-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32797092","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
Alleviation effect of arbutin on oxidative stress generated through tyrosinase reaction with L-tyrosine and L-DOPA. 熊果苷对酪氨酸酶与 L- 酪氨酸和 L-DOPA 反应产生的氧化应激的缓解作用。
BMC Biochemistry Pub Date : 2014-10-09 DOI: 10.1186/1471-2091-15-23
Mika Tada, Masahiro Kohno, Yoshimi Niwano
{"title":"Alleviation effect of arbutin on oxidative stress generated through tyrosinase reaction with L-tyrosine and L-DOPA.","authors":"Mika Tada, Masahiro Kohno, Yoshimi Niwano","doi":"10.1186/1471-2091-15-23","DOIUrl":"10.1186/1471-2091-15-23","url":null,"abstract":"<p><strong>Background: </strong>Hydroxyl radical that has the highest reactivity among reactive oxygen species (ROS) is generated through L-tyrosine-tyrosinase reaction. Thus, the melanogenesis might induce oxidative stress in the skin. Arbutin (p-hydroxyphenyl-β-D-glucopyranoside), a well-known tyrosinase inhibitor has been widely used for the purpose of skin whitening. The aim of the present study was to examine if arbutin could suppress the hydroxyl radical generation via tyrosinase reaction with its substrates, L-tyrosine and L-DOPA.</p><p><strong>Results: </strong>The hydroxyl radical, which was determined by an electron spin resonance-spin trapping technique, was generated by the addition of not only L-tyrosine but L-DOPA to tyrosinase in a concentration dependent manner. Arbutin could inhibit the hydroxyl radical generation in the both reactions.</p><p><strong>Conclusion: </strong>It is presumed that arbutin could alleviate oxidative stress derived from the melanogenic pathway in the skin in addition to its function as a whitening agent in cosmetics.</p>","PeriodicalId":9113,"journal":{"name":"BMC Biochemistry","volume":"15 ","pages":"23"},"PeriodicalIF":0.0,"publicationDate":"2014-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4195341/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32730516","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative sequence analysis and mutagenesis of ethylene forming enzyme (EFE) 2-oxoglutarate/Fe(II)-dependent dioxygenase homologs. 乙烯形成酶(EFE) 2-氧戊二酸酯/铁(II)依赖性双加氧酶同源物的比较序列分析和诱变。
BMC Biochemistry Pub Date : 2014-10-02 DOI: 10.1186/1471-2091-15-22
Nina Johansson, Karl O Persson, Christer Larsson, Joakim Norbeck
{"title":"Comparative sequence analysis and mutagenesis of ethylene forming enzyme (EFE) 2-oxoglutarate/Fe(II)-dependent dioxygenase homologs.","authors":"Nina Johansson,&nbsp;Karl O Persson,&nbsp;Christer Larsson,&nbsp;Joakim Norbeck","doi":"10.1186/1471-2091-15-22","DOIUrl":"https://doi.org/10.1186/1471-2091-15-22","url":null,"abstract":"<p><strong>Background: </strong>Ethylene is one of the most used chemical monomers derived from non-renewable sources and we are investigating the possibility of producing it in yeast via the ethylene forming enzyme (EFE) from Pseudomonas syringae. To enable engineering strategies to improve the enzyme, it is necessary to identify the regions and amino acid residues involved in ethylene formation.</p><p><strong>Results: </strong>We identified the open reading frame for the EFE homolog in Penicillium digitatum and also showed its capability of mediating ethylene production in yeast. The sequence of the EFE homologs from P.digitatum and P. syringae was compared to that of the non-functional EFE-homolog from Penicillium chrysogenum and ten amino acids were found to correlate with ethylene production. Several of these amino acid residues were found to be important for ethylene production via point mutations in P. syringae EFE. The EFE homolog from P. chrysogenum was engineered at 10 amino acid residues to mimic the P. syringae EFE, but this did not confer ethylene producing capability.Furthermore, we predicted the structure of EFE by homology to known structures of 2-oxoglutarate/Fe(II) dependent dioxygenases. Three of the amino acids correlating with ethylene production are located in the predicted 2-oxoglutarate binding domain. A protein domain specific for the EFE-class was shown to be essential for activity. Based on the structure and alanine substitutions, it is likely that amino acids (H189, D191 and H268) are responsible for binding the Fe(II) ligand.</p><p><strong>Conclusion: </strong>We provide further insight into the structure and function of the ethylene forming (EFE) - subclass of 2-oxoglutarate/Fe(II) dependent dioxygenases. We conclude that residues in addition to the 10 identified positions implicated in ethylene production by sequence comparison, are important for determining ethylene formation. We also demonstrate the use of an alternative EFE gene. The data from this study will provide the basis for directed protein engineering to enhance the ethylene production capability and properties of EFE.</p>","PeriodicalId":9113,"journal":{"name":"BMC Biochemistry","volume":"15 ","pages":"22"},"PeriodicalIF":0.0,"publicationDate":"2014-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1471-2091-15-22","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32716733","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 17
Importance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B. 扩展蛋白酶底物识别基序在人类和小鼠颗粒酶B切割BNIP-2中的重要性。
BMC Biochemistry Pub Date : 2014-09-10 DOI: 10.1186/1471-2091-15-21
Petra Van Damme, Kim Plasman, Giel Vandemoortele, Veronique Jonckheere, Sebastian Maurer-Stroh, Kris Gevaert
{"title":"Importance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B.","authors":"Petra Van Damme,&nbsp;Kim Plasman,&nbsp;Giel Vandemoortele,&nbsp;Veronique Jonckheere,&nbsp;Sebastian Maurer-Stroh,&nbsp;Kris Gevaert","doi":"10.1186/1471-2091-15-21","DOIUrl":"https://doi.org/10.1186/1471-2091-15-21","url":null,"abstract":"<p><strong>Background: </strong>Previous screening of the substrate repertoires and substrate specificity profiles of granzymes resulted in long substrate lists highly likely containing bystander substrates. Here, a recently developed degradomics technology that allows distinguishing efficiently from less efficiently cleaved substrates was applied to study the degradome of mouse granzyme B (mGrB).</p><p><strong>Results: </strong>In vitro kinetic degradome analysis resulted in the identification of 37 mGrB cleavage events, 9 of which could be assigned as efficiently targeted ones. Previously, cleavage at the IEAD75 tetrapeptide motif of Bid was shown to be efficiently and exclusively targeted by human granzyme B (hGrB) and thus not by mGrB. Strikingly, and despite holding an identical P4-P1 human Bid (hBid) cleavage motif, mGrB was shown to efficiently cleave the BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 or BNIP-2 at IEAD28. Like Bid, BNIP-2 represents a pro-apoptotic Bcl-2 protein family member and a potential regulator of GrB induced cell death. Next, in vitro analyses demonstrated the increased efficiency of human and mouse BNIP-2 cleavage by mGrB as compared to hGrB indicative for differing Bid/BNIP-2 substrate traits beyond the P4-P1 IEAD cleavage motif influencing cleavage efficiency. Murinisation of differential primed site residues in hBNIP-2 revealed that, although all contributing, a single mutation at the P3' position was found to significantly increase the mGrB/hGrB cleavage ratio, whereas mutating the P1' position from I29 > T yielded a 4-fold increase in mGrB cleavage efficiency. Finally, mutagenesis analyses revealed the composite BNIP-2 precursor patterns to be the result of alternative translation initiation at near-cognate start sites within the 5' leader sequence (5'UTR) of BNIP-2.</p><p><strong>Conclusions: </strong>Despite their high sequence similarity, and previously explained by their distinct tetrapeptide specificities observed, the substrate repertoires of mouse and human granzymes B only partially overlap. Here, we show that the substrate sequence context beyond the P4-P1 positions can influence orthologous granzyme B cleavage efficiencies to an unmatched extent. More specifically, in BNIP-2, the identical and hGrB optimal IEAD tetrapeptide substrate motif is targeted highly efficiently by mGrB, while this tetrapeptide motif is refractory towards mGrB cleavage in Bid.</p>","PeriodicalId":9113,"journal":{"name":"BMC Biochemistry","volume":"15 ","pages":"21"},"PeriodicalIF":0.0,"publicationDate":"2014-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1471-2091-15-21","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32657820","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Chemical-genetic induction of Malonyl-CoA decarboxylase in skeletal muscle. 骨骼肌丙二酰辅酶a脱羧酶的化学-遗传诱导。
BMC Biochemistry Pub Date : 2014-08-25 DOI: 10.1186/1471-2091-15-20
Susana Rodriguez, Jessica M Ellis, Michael J Wolfgang
{"title":"Chemical-genetic induction of Malonyl-CoA decarboxylase in skeletal muscle.","authors":"Susana Rodriguez,&nbsp;Jessica M Ellis,&nbsp;Michael J Wolfgang","doi":"10.1186/1471-2091-15-20","DOIUrl":"https://doi.org/10.1186/1471-2091-15-20","url":null,"abstract":"<p><strong>Background: </strong>Defects in skeletal muscle fatty acid oxidation have been implicated in the etiology of insulin resistance. Malonyl-CoA decarboxylase (MCD) has been a target of investigation because it reduces the concentration of malonyl-CoA, a metabolite that inhibits fatty acid oxidation. The in vivo role of muscle MCD expression in the development of insulin resistance remains unclear.</p><p><strong>Results: </strong>To determine the role of MCD in skeletal muscle of diet induced obese and insulin resistant mouse models we generated mice expressing a muscle specific transgene for MCD (Tg-fMCD(Skel)) stabilized posttranslationally by the small molecule, Shield-1. Tg-fMCD(Skel) and control mice were placed on either a high fat or low fat diet for 3.5 months. Obese and glucose intolerant as well as lean control Tg-fMCD(Skel) and nontransgenic control mice were treated with Shield-1 and changes in their body weight and insulin sensitivity were determined upon induction of MCD. Inducing MCD activity >5-fold in skeletal muscle over two weeks did not alter body weight or glucose intolerance of obese mice. MCD induction further potentiated the defects in insulin signaling of obese mice. In addition, key enzymes in fatty acid oxidation were suppressed following MCD induction.</p><p><strong>Conclusion: </strong>Acute induction of MCD in the skeletal muscle of obese and glucose intolerant mice did not improve body weight and decreased insulin sensitivity compared to obese nontransgenic controls. Induction of MCD in skeletal muscle resulted in a suppression of mitochondrial oxidative genes suggesting a redundant and metabolite driven regulation of gene expression.</p>","PeriodicalId":9113,"journal":{"name":"BMC Biochemistry","volume":"15 ","pages":"20"},"PeriodicalIF":0.0,"publicationDate":"2014-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1471-2091-15-20","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32609125","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Comparative analysis of diosgenin in Dioscorea species and related medicinal plants by UPLC-DAD-MS. UPLC-DAD-MS分析薯蓣属植物与相关药用植物中薯蓣皂苷元的比较。
BMC Biochemistry Pub Date : 2014-08-09 DOI: 10.1186/1471-2091-15-19
Tao Yi, Lan-Lan Fan, Hong-Li Chen, Guo-Yuan Zhu, Hau-Man Suen, Yi-Na Tang, Lin Zhu, Chu Chu, Zhong-Zhen Zhao, Hu-Biao Chen
{"title":"Comparative analysis of diosgenin in Dioscorea species and related medicinal plants by UPLC-DAD-MS.","authors":"Tao Yi,&nbsp;Lan-Lan Fan,&nbsp;Hong-Li Chen,&nbsp;Guo-Yuan Zhu,&nbsp;Hau-Man Suen,&nbsp;Yi-Na Tang,&nbsp;Lin Zhu,&nbsp;Chu Chu,&nbsp;Zhong-Zhen Zhao,&nbsp;Hu-Biao Chen","doi":"10.1186/1471-2091-15-19","DOIUrl":"https://doi.org/10.1186/1471-2091-15-19","url":null,"abstract":"<p><strong>Background: </strong>Dioscorea is a genus of flowering plants, and some Dioscorea species are known and used as a source for the steroidal sapogenin diosgenin. To screen potential resource from Dioscorea species and related medicinal plants for diosgenin extraction, a rapid method to compare the contents of diosgenin in various plants is crucial.</p><p><strong>Results: </strong>An ultra-performance liquid chromatography (UPLC) coupled with diode array detection (DAD) and electrospray ionization mass spectrometry (ESI-MS) method was developed for identification and determination of diosgenin in various plants. A comprehensive validation of the developed method was conducted. Twenty-four batches of plant samples from four Dioscorea species, one Smilax species and two Heterosmilax species were analyzed by using the developed method.The present method presented good sensitivity, precision and accuracy. Diosgenin was found in three Dioscorea species and one Heterosmilax species, namely D. zingiberensis, D. septemloba, D. collettii and H. yunnanensis.</p><p><strong>Conclusion: </strong>The method is suitable for the screening of diosgenin resources from plants. D. zingiberensis is an important resource for diosgenin harvesting.</p>","PeriodicalId":9113,"journal":{"name":"BMC Biochemistry","volume":"15 ","pages":"19"},"PeriodicalIF":0.0,"publicationDate":"2014-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1471-2091-15-19","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32572109","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 69
Galloyl-RGD as a new cosmetic ingredient. 没食子酰rgd作为一种新型化妆品成分。
BMC Biochemistry Pub Date : 2014-08-08 DOI: 10.1186/1471-2091-15-18
Dae-Hun Park, Dae Hyun Jung, Soo Jung Kim, Sung Han Kim, Kyung Mok Park
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引用次数: 5
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