Biogeosciences最新文献

{"title":"Empirical upscaling of OzFlux eddy covariance for high-resolution monitoring of terrestrial carbon uptake in Australia","authors":"Chad A. Burton, Luigi J. Renzullo, Sami W. Rifai, Albert I. J. M. Van Dijk","doi":"10.5194/bg-20-4109-2023","DOIUrl":"https://doi.org/10.5194/bg-20-4109-2023","url":null,"abstract":"Abstract. We develop high-resolution (1 km) estimates of gross primary productivity (GPP), ecosystem respiration (ER), and net ecosystem exchange (NEE) over the Australian continent for the period January 2003 to June 2022 by empirical upscaling of flux tower measurements. We compare our estimates with nine other products that cover the three broad categories that define current methods for estimating the terrestrial carbon cycle and assess if consiliences between datasets can point to the correct dynamics of Australia's carbon cycle. Our results indicate that regional empirical upscaling greatly improves upon the existing global empirical upscaling efforts, outperforms process-based models, and agrees much better with the dynamics of CO2 flux over Australia as estimated by two regional atmospheric inversions. Our nearly 20-year estimates of terrestrial carbon fluxes revealed that Australia is a strong net carbon sink of −0.44 PgC yr−1 (interquartile range, IQR = 0.42 PgC yr−1) on average, with an inter-annual variability of 0.18 PgC yr−1 and an average seasonal amplitude of 0.85 PgC yr−1. Annual mean carbon uptake estimated from other methods ranged considerably, while carbon flux anomalies showed much better agreement between methods. NEE anomalies were predominately driven by cumulative rainfall deficits and surpluses, resulting in larger anomalous responses from GPP than ER. In contrast, we show that the long-term average seasonal cycle is dictated more by the variability in ER than GPP, resulting in peak carbon uptake typically occurring during the cooler, drier austral autumn and winter months. This new estimate of Australia's terrestrial carbon cycle provides a benchmark for assessment against land surface model simulations and a means for monitoring of Australia's terrestrial carbon cycle at an unprecedented high resolution. We call this new estimate of Australia's terrestrial carbon cycle “AusEFlux” (Australian Empirical Fluxes).","PeriodicalId":8899,"journal":{"name":"Biogeosciences","volume":"93 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135045896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Biogenic calcium carbonate as evidence for life","authors":"Sara Ronca, Francesco Mura, Marco Brandano, Angela Cirigliano, Francesca Benedetti, Alessandro Grottoli, Massimo Reverberi, Daniele Federico Maras, Rodolfo Negri, Ernesto Di Mauro, Teresa Rinaldi","doi":"10.5194/bg-20-4135-2023","DOIUrl":"https://doi.org/10.5194/bg-20-4135-2023","url":null,"abstract":"Abstract. The history of the Earth is a story of the co-evolution of minerals and microbes: not only have numerous rocks arisen from life but also life itself may have formed from rocks. To understand the strong association between microbes and inorganic substrates, we investigated the moonmilk, a calcium carbonate deposit of possible microbial origin, occurring in the Iron Age Etruscan necropolis of Tarquinia, in Italy. These tombs provide a unique environment where the hypogeal walls of the tombs are covered by this speleothem. To study moonmilk formation, we investigated the bacterial community in the rock in which the tombs were carved: calcarenite and hybrid sandstone. We present the first evidence that moonmilk precipitation is driven by microbes within the rocks and not only on the rock surfaces. We also describe how the moonmilk produced within the rocks contributes to rock formation and evolution. The microbial communities of the calcarenite and hybrid sandstone displayed, at the phylum level, the same microbial pattern of the moonmilk sampled from the walls of the hypogeal tombs, suggesting that the moonmilk originates from the metabolism of an endolytic bacterial community. The calcite moonmilk is the only known carbonate speleothem on Earth with undoubted biogenic origin, thus representing a robust and credible biosignature of life. Its presence in the inner parts of rocks adds to its characteristics as a biosignature.","PeriodicalId":8899,"journal":{"name":"Biogeosciences","volume":"14 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135094896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Herbivore–shrub interactions influence ecosystem respiration and biogenic volatile organic compound composition in the subarctic","authors":"Cole G. Brachmann, Tage Vowles, Riikka Rinnan, Mats P. Björkman, Anna Ekberg, Robert G. Björk","doi":"10.5194/bg-20-4069-2023","DOIUrl":"https://doi.org/10.5194/bg-20-4069-2023","url":null,"abstract":"Abstract. Arctic ecosystems are warming nearly 4 times faster than the global average, which is resulting in plant community shifts and subsequent changes in biogeochemical processes such as gaseous fluxes. Additionally, herbivores shape plant communities and thereby may alter the magnitude and composition of ecosystem respiration and biogenic volatile organic compound (BVOC) emissions. Here we determine the effect of large mammalian herbivores on ecosystem respiration and BVOC emissions in two southern and two northern sites in Swedish Scandes, encompassing mountain birch (LOMB) and shrub heath (LORI) communities in the south and low-herb meadow (RIGA) and shrub heath (RIRI) communities in the north. Herbivory significantly altered BVOC composition between sites and decreased ecosystem respiration at RIGA. The difference in graminoid cover was found to have a large effect on ecosystem respiration between sites as RIGA, with the highest cover, had 35 % higher emissions than the next highest-emitting site (LOMB). Additionally, LOMB had the highest emissions of terpenes, with the northern sites having significantly lower emissions. Differences between sites were primarily due to differences in exclosure effects and soil temperature and the prevalence of different shrub growth forms. Our results suggest that herbivory has a significant effect on trace gas fluxes in a productive meadow community and that differences between communities may be driven by differences in shrub composition.","PeriodicalId":8899,"journal":{"name":"Biogeosciences","volume":"8 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134944159","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A modeling approach to investigate drivers, variability and uncertainties in O₂ fluxes and O₂ : CO₂ exchange ratios in a temperate forest","authors":"Yuan Yan, Anne Klosterhalfen, Fernando Moyano, Matthias Cuntz, Andrew C. Manning, Alexander Knohl","doi":"10.5194/bg-20-4087-2023","DOIUrl":"https://doi.org/10.5194/bg-20-4087-2023","url":null,"abstract":"Abstract. The O2 : CO2 exchange ratio (ER) between terrestrial ecosystems and the atmosphere is a key parameter for partitioning global ocean and land carbon fluxes. The long-term terrestrial ER is considered to be close to 1.10 mol of O2 consumed per mole of CO2 produced. Due to the technical challenge in measuring directly the ER of entire terrestrial ecosystems (EReco), little is known about variations in ER at hourly and seasonal scales, as well as how different components contribute to EReco. In this modeling study, we explored the variability in and drivers of EReco and evaluated the hypothetical uncertainty in determining ecosystem O2 fluxes based on current instrument precision. We adapted the one-dimensional, multilayer atmosphere–biosphere gas exchange model “CANVEG” to simulate hourly EReco from modeled O2 and CO2 fluxes in a temperate beech forest in Germany. We found that the modeled annual mean EReco ranged from 1.06 to 1.12 mol mol−1 within the 5-year study period. Hourly EReco showed strong variations over diel and seasonal cycles and within the vertical canopy profile. The determination of ER from O2 and CO2 mole fractions in air above and within the canopy (ERconc) varied between 1.115 and 1.15 mol mol−1. CANVEG simulations also indicated that ecosystem O2 fluxes could be derived with the flux-gradient method using measured vertical gradients in scalar properties, as well as fluxes of CO2, sensible heat and latent energy derived from eddy covariance measurements. Owing to measurement uncertainties, however, the uncertainty in estimated O2 fluxes derived with the flux-gradient approach could be as high as 15 µmol m−2 s−1, which represented the 90 % quantile of the uncertainty in hourly data with a high-accuracy instrument. We also demonstrated that O2 fluxes can be used to partition net CO2 exchange fluxes into their component fluxes of photosynthesis and respiration if EReco is known. The uncertainty of the partitioned gross assimilation ranged from 1.43 to 4.88 µmol m−2 s−1 assuming a measurement uncertainty of 0.1 or 2.5 µmol m−2 s−1 for net ecosystem CO2 exchange and from 0.1 to 15 µmol m−2 s−1 for net ecosystem O2 exchange, respectively. Our analysis suggests that O2 measurements at ecosystem scale have the potential to partition net CO2 fluxes into their component fluxes, but further improvement in instrument precision is needed.","PeriodicalId":8899,"journal":{"name":"Biogeosciences","volume":"37 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134944150","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Carbon dioxide and methane fluxes from mounds of African fungus-growing termites","authors":"Matti Räsänen, Risto Vesala, Petri Rönnholm, Laura Arppe, Petra Manninen, Markus Jylhä, Jouko Rikkinen, Petri Pellikka, Janne Rinne","doi":"10.5194/bg-20-4029-2023","DOIUrl":"https://doi.org/10.5194/bg-20-4029-2023","url":null,"abstract":"Abstract. Termites play an essential role in decomposing dead plant material in tropical ecosystems and are thus major sources of gaseous C emissions in many environments. In African savannas, fungus-growing termites are among the ecologically most influential termite species. We studied the gas exchange from mounds of two closely related fungus-growing species (Macrotermes subhyalinus and M. michaelseni, respectively) in two habitats representing different vegetation types (grassland, bushland) together with soil fluxes around the mounds. The fluxes from active termite mounds varied from 120 to 2100 mg CO2–C m−2 h−1 for carbon dioxide (CO2) and from 0.06 to 3.7 mg CH4–C m−2 h−1 for methane (CH4) fluxes. Mound CO2 fluxes varied seasonally with a 64 % decrease and 41 % increase in the fluxes from the dry to wet season at the grassland and bushland sites, respectively. During the wet season, the CO2 fluxes were significantly correlated with termite mound volume. The diurnal measurements from two M. michaelseni mounds suggest that the gas fluxes peak during the daytime, possibly reflecting changes in mound internal air circulation. Soil fluxes of both CO2 and CH4 were enhanced at up to 2 m distance from the mounds compared to the local soil respiration, indicating that, in addition to mound ventilation structures, a small proportion of the metabolic gases produced also leave the nest via surrounding soils.","PeriodicalId":8899,"journal":{"name":"Biogeosciences","volume":"182 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135591486","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Methane emissions due to reservoir flushing: a significant emission pathway?","authors":"Ole Lessmann, Jorge Encinas Fernández, Karla Martínez-Cruz, Frank Peeters","doi":"10.5194/bg-20-4057-2023","DOIUrl":"https://doi.org/10.5194/bg-20-4057-2023","url":null,"abstract":"Abstract. Reservoirs represent a globally significant source of the greenhouse gas methane (CH4), which is emitted via different emission pathways. In some reservoirs, reservoir flushing is employed as a sediment management strategy to counteract growing sediment deposits that threaten reservoir capacity. Reservoir flushing utilizes the eroding force of water currents during water level drawdown to mobilize and transport sediment deposits through the dam outlet into the downstream river. During this process, CH4 that is stored in the sediment can be released into the water and degas to the atmosphere, resulting in CH4 emissions. Here, we assess the significance of this CH4 emission pathway and compare it to other CH4 emission pathways from reservoirs. We measured seasonal and spatial CH4 concentrations in the sediment of Schwarzenbach Reservoir, providing one of the largest datasets on CH4 pore water concentrations in freshwater systems. Based on this dataset we determined CH4 fluxes from the sediment and estimated potential CH4 emissions due to reservoir flushing. CH4 emissions due to one flushing operation can constitute 7 %–14 % of the typical annual CH4 emissions from Schwarzenbach Reservoir, whereby the amount of released CH4 depends on the seasonal timing of the flushing operation and can differ by a factor of 2. Larger flushing events that mobilize deeper sediment layers lead to non-linear increases in CH4 mobilization. This suggests that regular flushing of smaller sediment layers releases less CH4 than removal of the same sediment volume in fewer flushing events of thicker sediment layers. However, additional indirect CH4 emissions pathways contributing to the total CH4 emissions may vary with the flushing operation. In other reservoirs with higher sediment loadings than Schwarzenbach Reservoir, reservoir flushing could cause substantial CH4 emissions, especially when flushing operations are conducted frequently. Our study recognizes CH4 emissions due to reservoir flushing as an important pathway, identifies potential management strategies to mitigate these CH4 emissions and emphasizes the need for further research.","PeriodicalId":8899,"journal":{"name":"Biogeosciences","volume":"49 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135645066","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Element ∕ Ca ratios in Nodosariida (Foraminifera) and their potential application for paleoenvironmental reconstructions","authors":"Laura Pacho, Lennart de Nooijer, Gert-Jan Reichart","doi":"10.5194/bg-20-4043-2023","DOIUrl":"https://doi.org/10.5194/bg-20-4043-2023","url":null,"abstract":"Abstract. The chemical composition of foraminiferal shells is a well-known tool in paleoceanography to reconstruct past environments and climate. Their application is based on the relation between environmental variables and the concentration of elements incorporated or stable isotope fractionation during calcification. The vast majority of these so-called proxy relationships are based on the foraminiferal order of the Rotaliida, which, for example, encompasses all living planktonic species. However, there are more orders of foraminifera with calcifying members, some of which have fundamentally different biomineralization pathways, such as the Nodosariida, the Polymorphinida and the Vaginulinida. All these belong to the class of the Nodosariata and produce calcite shells, which may serve as carriers of paleoenvironmental and climate signals. The microstructures of these shells and overall morphology of these foraminifera strongly deviate from the Rotaliida, suggesting that their elemental and stable isotopic composition do not necessarily respond similarly to environmental parameters. A potential advantage of the Nodosariata is that they appear considerably earlier in the fossil record (Carboniferous) than the Rotaliida (Jurassic), thereby possibly extending the range of foraminifer-based paleoceanographic reconstructions considerably. To test the potential application of Nodosariata foraminifera as paleoproxies, we investigated incorporation of 5 elements in 11 species as a function of environmental parameters from a transect sampled in the Gulf of Mexico. Their element composition (B / Ca, Na / Ca, Mg / Ca, Sr / Ca and Ba / Ca) shows a distinct geochemical signature for these foraminifera, different to that of members of other foraminiferal orders. Results also show an increase in Mg / Ca values with increasing temperature, similar to that known for the Rotaliida, which suggest that Nodosariata shells might be useful for paleotemperature reconstructions. The difference in Mg / Ca–temperature calibration in Nodosariata compared to Rotaliida, with the large differences in their morphology, shell microstructures and overall geochemical composition, suggests that the Mg / Ca-to-temperature relationship is partly independent of the exact calcification mechanism. We compare Mg / Ca–temperature sensitivities across foraminiferal orders and describe a relationship between the average Mg / Ca and the sensitivity of the Mg / Ca–temperature calibration. For other elements, the variability across orders is smaller compared to that in Mg / Ca, which results in more similar El / Ca–environmental calibrations.","PeriodicalId":8899,"journal":{"name":"Biogeosciences","volume":"68 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135644398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Low cobalt inventories in the Amundsen and Ross seas driven by high demand for labile cobalt uptake among native phytoplankton communities","authors":"Rebecca J. Chmiel, Riss M. Kell, Deepa Rao, Dawn M. Moran, Giacomo R. DiTullio, Mak A. Saito","doi":"10.5194/bg-20-3997-2023","DOIUrl":"https://doi.org/10.5194/bg-20-3997-2023","url":null,"abstract":"Abstract. Cobalt (Co) is a scarce but essential micronutrient for marine plankton in the Southern Ocean and coastal Antarctic seas, where dissolved cobalt (dCo) concentrations can be extremely low. This study presents total dCo and labile dCo distributions measured via shipboard voltammetry in the Amundsen Sea, the Ross Sea and Terra Nova Bay during the CICLOPS (Cobalamin and Iron Co-Limitation of Phytoplankton Species) expedition. A significantly smaller dCo inventory was observed during the 2017/2018 CICLOPS expedition compared to two 2005/2006 expeditions to the Ross Sea conducted over a decade earlier. The dCo inventory loss (∼ 10–20 pM) was present in both the surface and deep ocean and was attributed to the loss of labile dCo, resulting in the near-complete complexation of dCo by strong ligands in the photic zone. A changing dCo inventory in Antarctic coastal seas could be driven by the alleviation of iron (Fe) limitation in coastal areas, where the flux of Fe-rich sediments from melting ice shelves and deep sediment resuspension may have shifted the region towards vitamin B12 and/or zinc (Zn) limitation, both of which are likely to increase the demand for Co among marine plankton. High demand for Zn by phytoplankton can result in increased Co and cadmium (Cd) uptake because these metals often share the same metal uptake transporters. This study compared the magnitudes and ratios of Zn, Cd and Co uptake (ρ) across upper-ocean profiles and the observed order-of-magnitude uptake trends (ρZn > ρCd > ρCo) that paralleled the trace metal concentrations in seawater. High rates of Co and Zn uptake were observed throughout the region, and the speciation of available Co and Zn appeared to influence trends in dissolved metal : phosphate stoichiometry and uptake rates over depth. Multi-year loss of the dCo inventory throughout the water column may be explained by an increase in Co uptake into particulate organic matter and subsequently an increased flux of Co into sediments via sinking and burial. This perturbation of the Southern Ocean Co biogeochemical cycle could signal changes in the nutrient limitation regimes, phytoplankton bloom composition and carbon sequestration sink of the Southern Ocean.","PeriodicalId":8899,"journal":{"name":"Biogeosciences","volume":"123 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135645077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The response of wildfire regimes to Last Glacial Maximum carbon dioxide and climate","authors":"Olivia Haas, Iain Colin Prentice, Sandy P. Harrison","doi":"10.5194/bg-20-3981-2023","DOIUrl":"https://doi.org/10.5194/bg-20-3981-2023","url":null,"abstract":"Abstract. Climate and fuel availability jointly control the incidence of wildfires. The effects of atmospheric CO2 on plant growth influence fuel availability independently of climate, but the relative importance of each in driving large-scale changes in wildfire regimes cannot easily be quantified from observations alone. Here, we use previously developed empirical models to simulate the global spatial pattern of burnt area, fire size, and fire intensity for modern and Last Glacial Maximum (LGM; ∼ 21 000 ka) conditions using both realistic changes in climate and CO2 and sensitivity experiments to separate their effects. Three different LGM scenarios are used to represent the range of modelled LGM climates. We show large, modelled reductions in burnt area at the LGM compared to the recent period, consistent with the sedimentary charcoal record. This reduction was predominantly driven by the effect of low CO2 on vegetation productivity. The amplitude of the reduction under low-CO2 conditions was similar regardless of the LGM climate scenario and was not observed in any LGM scenario when only climate effects were considered, with one LGM climate scenario showing increased burning under these conditions. Fire intensity showed a similar sensitivity to CO2 across different climates but was also sensitive to changes in vapour pressure deficit (VPD). Modelled fire size was reduced under LGM CO2 in many regions but increased under LGM climates because of changes in wind strength, dry days (DDs), and diurnal temperature range (DTR). This increase was offset under the coldest LGM climate in the northern latitudes because of a large reduction in VPD. These results emphasize the fact that the relative magnitudes of changes in different climate variables influence the wildfire regime and that different aspects of climate change can have opposing effects. The importance of CO2 effects imply that future projections of wildfire must take rising CO2 into account.","PeriodicalId":8899,"journal":{"name":"Biogeosciences","volume":"63 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135343688","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Modeling coupled nitrification–denitrification in soil with an organic hotspot","authors":"Jie Zhang, Elisabeth Larsen Kolstad, Wenxin Zhang, Iris Vogeler, Søren O. Petersen","doi":"10.5194/bg-20-3895-2023","DOIUrl":"https://doi.org/10.5194/bg-20-3895-2023","url":null,"abstract":"Abstract. The emission of nitrous oxide (N2O) from agricultural soils to the atmosphere is a significant contributor to anthropogenic greenhouse gas emissions. The recycling of organic nitrogen (N) in manure and crop residues may result in spatiotemporal variability in N2O production and soil efflux which is difficult to capture by process-based models. We propose a multi-species, reactive transport model to provide detailed insight into the spatiotemporal variability in nitrogen (N) transformations around such N2O hotspots, which consists of kinetic reactions of soil respiration, nitrification, nitrifier denitrification, and denitrification represented by a system of coupled partial differential equations. The model was tested with results from an incubation experiment at two different soil moisture levels (−30 and −100 hPa) and was shown to reproduce the recorded N2O and dinitrogen (N2) emissions and the dynamics of important carbon (C) and N components in soil reasonably well. The simulation indicated that the four different microbial populations developed in closely connected but separate layers, with denitrifying bacteria growing within the manure-dominated zone and nitrifying bacteria in the well-aerated soil outside the manure zone and with time also within the manure layer. The modeled N2O production within the manure zone was greatly enhanced by the combined effect of oxygen deficit, abundant carbon source, and supply of nitrogenous substrates. In the wetter soil treatment with a water potential of −30 hPa, the diffusive flux of nitrate (NO3-) across the manure–soil interface was the main source of NO3- for denitrification in the manure zone, while at a soil water potential of −100 hPa, diffusion became less dominant and overtaken by the co-occurrence of nitrification and denitrification in the manure zone. Scenarios were analyzed where the diffusive transport of dissolved organic carbon or different mineral N species was switched off, and they showed that the simultaneous diffusion of NO3-, ammonium (NH4+), and nitrite (NO2-) was crucial to simulate the dynamics of N transformations and N2O emissions in the model. Without considering solute diffusion in process-based N2O models, the rapid turnover of C and N associated with organic hotspots can not be accounted for, and it may result in the underestimation of N2O emissions from soil after manure application. The model and its parameters allow for new detailed insights into the interactions between transport and microbial transformations associated with N2O emissions in heterogeneous soil environments.","PeriodicalId":8899,"journal":{"name":"Biogeosciences","volume":"2010 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135584807","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}