{"title":"A comparison of methods for theoretical photochemistry: Applications, successes and challenges","authors":"N. Hill, M. Coote","doi":"10.1016/bs.arcc.2019.08.008","DOIUrl":"https://doi.org/10.1016/bs.arcc.2019.08.008","url":null,"abstract":"","PeriodicalId":88823,"journal":{"name":"Annual reports in computational chemistry","volume":"38 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.arcc.2019.08.008","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54060632","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Tensor representations and symmetry in many-electron wave functions","authors":"T. Crawford, Roberto Di Remigio","doi":"10.1016/bs.arcc.2019.08.005","DOIUrl":"https://doi.org/10.1016/bs.arcc.2019.08.005","url":null,"abstract":"","PeriodicalId":88823,"journal":{"name":"Annual reports in computational chemistry","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.arcc.2019.08.005","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54060616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Computational vibrational spectroscopy for the detection of molecules in space","authors":"R. Fortenberry, Timothy J. Lee","doi":"10.1016/bs.arcc.2019.08.006","DOIUrl":"https://doi.org/10.1016/bs.arcc.2019.08.006","url":null,"abstract":"","PeriodicalId":88823,"journal":{"name":"Annual reports in computational chemistry","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.arcc.2019.08.006","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54060620","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Converging finite-temperature many-body perturbation theory in the grand canonical ensemble that conserves the average number of electrons","authors":"S. Hirata, P. Jha","doi":"10.1016/bs.arcc.2019.08.003","DOIUrl":"https://doi.org/10.1016/bs.arcc.2019.08.003","url":null,"abstract":"","PeriodicalId":88823,"journal":{"name":"Annual reports in computational chemistry","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.arcc.2019.08.003","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42931549","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Gaussian Accelerated Molecular Dynamics: Theory, Implementation, and Applications.","authors":"Yinglong Miao, J Andrew McCammon","doi":"10.1016/bs.arcc.2017.06.005","DOIUrl":"10.1016/bs.arcc.2017.06.005","url":null,"abstract":"<p><p>A novel Gaussian Accelerated Molecular Dynamics (GaMD) method has been developed for simultaneous unconstrained enhanced sampling and free energy calculation of biomolecules. Without the need to set predefined reaction coordinates, GaMD enables unconstrained enhanced sampling of the biomolecules. Furthermore, by constructing a boost potential that follows a Gaussian distribution, accurate reweighting of GaMD simulations is achieved via cumulant expansion to the second order. The free energy profiles obtained from GaMD simulations allow us to identify distinct low energy states of the biomolecules and characterize biomolecular structural dynamics quantitatively. In this chapter, we present the theory of GaMD, its implementation in the widely used molecular dynamics software packages (AMBER and NAMD), and applications to the alanine dipeptide biomolecular model system, protein folding, biomolecular large-scale conformational transitions and biomolecular recognition.</p>","PeriodicalId":88823,"journal":{"name":"Annual reports in computational chemistry","volume":"13 ","pages":"231-278"},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.arcc.2017.06.005","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36064389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Interpreting Bonding and Spectra With Correlated, One-Electron Concepts From Electron Propagator Theory","authors":"J. V. Ortiz","doi":"10.1016/BS.ARCC.2017.06.002","DOIUrl":"https://doi.org/10.1016/BS.ARCC.2017.06.002","url":null,"abstract":"","PeriodicalId":88823,"journal":{"name":"Annual reports in computational chemistry","volume":"13 1","pages":"139-182"},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.ARCC.2017.06.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54060082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gregory S. Tschumper, Thomas L. Ellington, Sarah N. Johnson
{"title":"Dissociation in Binary Acid/Base Clusters: An Examination of Inconsistencies Introduced Into the Many-Body Expansion by Naïve Fragmentation Schemes","authors":"Gregory S. Tschumper, Thomas L. Ellington, Sarah N. Johnson","doi":"10.1016/BS.ARCC.2017.06.003","DOIUrl":"https://doi.org/10.1016/BS.ARCC.2017.06.003","url":null,"abstract":"","PeriodicalId":88823,"journal":{"name":"Annual reports in computational chemistry","volume":"13 1","pages":"93-115"},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.ARCC.2017.06.003","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54060138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}