Annual reports in computational chemistry最新文献

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Chapter 13 Principal Components Analysis: A Review of its Application on Molecular Dynamics Data 第13章主成分分析在分子动力学数据中的应用综述
Annual reports in computational chemistry Pub Date : 2006-01-01 DOI: 10.1016/S1574-1400(06)02013-5
S. A. Stein, Anne E. Loccisano, S. Firestine, J. Evanseck
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引用次数: 61
Chapter 16 Recent Evaluations of High Throughput Docking Methods for Pharmaceutical Lead Finding – Consensus and Caveats 第16章药物先导物发现的高通量对接方法的最新评价——共识和注意事项
Annual reports in computational chemistry Pub Date : 2006-01-01 DOI: 10.1016/S1574-1400(06)02016-0
W. Cornell
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引用次数: 6
Chapter 1 Real-World Kinetics via Simulations 第一章真实世界动力学模拟
Annual reports in computational chemistry Pub Date : 2006-01-01 DOI: 10.1016/S1574-1400(06)02001-9
F. A. Houle, W. Hinsberg
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引用次数: 2
Chapter 6 Hybrid Explicit/Implicit Solvation Methods 第六章混合显式/隐式溶剂化方法
Annual reports in computational chemistry Pub Date : 2006-01-01 DOI: 10.1016/S1574-1400(06)02006-8
Asim Okur, C. Simmerling
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引用次数: 20
Chapter 9 Molecular Similarity: Advances in Methods, Applications and Validations in Virtual Screening and QSAR. 第九章分子相似性:虚拟筛选和QSAR的方法、应用和验证进展。
Annual reports in computational chemistry Pub Date : 2006-01-01 Epub Date: 2006-11-07 DOI: 10.1016/S1574-1400(06)02009-3
Andreas Bender, Jeremy L Jenkins, Qingliang Li, Sam E Adams, Edward O Cannon, Robert C Glen
{"title":"Chapter 9 Molecular Similarity: Advances in Methods, Applications and Validations in Virtual Screening and QSAR.","authors":"Andreas Bender,&nbsp;Jeremy L Jenkins,&nbsp;Qingliang Li,&nbsp;Sam E Adams,&nbsp;Edward O Cannon,&nbsp;Robert C Glen","doi":"10.1016/S1574-1400(06)02009-3","DOIUrl":"https://doi.org/10.1016/S1574-1400(06)02009-3","url":null,"abstract":"<p><p>This chapter discusses recent developments in some of the areas that exploit the molecular similarity principle, novel approaches to capture molecular properties by the use of novel descriptors, focuses on a crucial aspect of computational models-their validity, and discusses additional ways to examine data available, such as those from high-throughput screening (HTS) campaigns and to gain more knowledge from this data. The chapter also presents some of the recent applications of methods discussed focusing on the successes of virtual screening applications, database clustering and comparisons (such as drug- and in-house-likeness), and the recent large-scale validations of docking and scoring programs. While a great number of descriptors and modeling methods has been proposed until today, the recent trend toward proper model validation is very much appreciated. Although some of their limitations are surely because of underlying principles and limitations of fundamental concepts, others will certainly be eliminated in the future.</p>","PeriodicalId":88823,"journal":{"name":"Annual reports in computational chemistry","volume":"2 ","pages":"141-168"},"PeriodicalIF":0.0,"publicationDate":"2006-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/S1574-1400(06)02009-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37895487","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 15
Chapter 11 Recent Advances in Design of Small-Molecule Ligands to Target Protein–Protein Interactions 第11章小分子配体设计与蛋白-蛋白相互作用的最新进展
Annual reports in computational chemistry Pub Date : 2006-01-01 DOI: 10.1016/S1574-1400(06)02011-1
Chao-Yie Yang, Shaomeng Wang
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引用次数: 0
Chapter 14 Solvent Effects on Organic Reactions from QM/MM Simulations 第十四章QM/MM模拟中溶剂对有机反应的影响
Annual reports in computational chemistry Pub Date : 2006-01-01 DOI: 10.1016/S1574-1400(06)02014-7
O. Acevedo, W. L. Jorgensen
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引用次数: 9
Time-Dependent Density Functional Theory in Quantum Chemistry 量子化学中时变密度泛函理论
Annual reports in computational chemistry Pub Date : 2005-01-01 DOI: 10.1016/S1574-1400(05)01002-9
F. Furche, K. Burke
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引用次数: 46
Chapter 3 Computational Thermochemistry: A Brief Overview of Quantum Mechanical Approaches 第三章计算热化学:量子力学方法的简要概述
Annual reports in computational chemistry Pub Date : 2005-01-01 DOI: 10.1016/S1574-1400(05)01003-0
Jan M. L. Martin
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引用次数: 32
Chapter 9 Calculating Binding Free Energy in Protein–Ligand Interaction 第九章计算蛋白质-配体相互作用中的结合自由能
Annual reports in computational chemistry Pub Date : 2005-01-01 DOI: 10.1016/S1574-1400(05)01009-1
K. Raha, K. Merz
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引用次数: 30
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