Biochimica et biophysica acta最新文献

Temperature dependence of diffusion in model and live cell membranes characterized by imaging fluorescence correlation spectroscopy. 成像荧光相关光谱表征模型和活细胞膜中扩散的温度依赖性。

Biochimica et biophysica acta Pub Date : 2014-03-01

Nirmalya Bag, Darilyn Hui Xin Yap, Thorsten Wohland

{"title":"Temperature dependence of diffusion in model and live cell membranes characterized by imaging fluorescence correlation spectroscopy.","authors":"Nirmalya Bag, Darilyn Hui Xin Yap, Thorsten Wohland","doi":"","DOIUrl":"","url":null,"abstract":"The organization of the plasma membrane is regulated by the dynamic equilibrium between the liquid ordered(Lo) and liquid disordered (Ld) phases. The abundance of the Lo phase is assumed to be a consequence of the interaction between cholesterol and the other lipids, which are otherwise in either the Ld or gel (So) phase.The characteristic lipid packing in these phases results in significant differences in their respective lateral dynamics.In this study, imaging total internal reflection fluorescence correlation spectroscopy (ITIR-FCS) is applied to monitor the diffusion within supported lipid bilayers (SLBs) as functions of temperature and composition. We show that the temperature dependence of membrane lateral diffusion,which is parameterized by the Arrhenius activation energy (EArr), can resolve the sub-resolution phase behavior of lipid mixtures. The FCS diffusion law, a novel membrane heterogeneity ruler implemented in ITIR-FCS, is applied to show that the domains in the So–Ldphase are static and large while they are small and dynamic in the Lo–Ld phase. Diffusion measurements and the subsequent FCS diffusion law analyses at different temperatures show that the modulation in membrane dynamics at high temperature (313 K) is a cumulative effect of domain melting and rigidity relaxation. Finally, we extend these studies to the plasma membranes of commonly used neuroblastoma, HeLa and fibroblast cells.The temperature dependence of membrane dynamics for neuroblastoma cells is significantly different from that of HeLa or fibroblast cells as the different cell types exhibit a high level of compositional heterogeneity.","PeriodicalId":8811,"journal":{"name":"Biochimica et biophysica acta","volume":" ","pages":"802-13"},"PeriodicalIF":0.0,"publicationDate":"2014-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40288279","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Searching for a successful HDL-based treatment strategy. 寻找一种成功的高密度脂蛋白治疗策略。

Biochimica et biophysica acta Pub Date : 2014-01-01

Srinivasa T Reddy, Mohamad Navab, G M Anantharamaiah, Alan M Fogelman

引用次数: 0

CD1d favors MHC neighborhood, GM1 ganglioside proximity and low detergent sensitive membrane regions on the surface of B lymphocytes. CD1d有利于B淋巴细胞表面的MHC邻近区、GM1神经节苷脂邻近区和低洗涤剂敏感膜区。

Biochimica et biophysica acta Pub Date : 2014-01-01

Dilip Shrestha, Mark A Exley, György Vereb, János Szöllősi, Attila Jenei

{"title":"CD1d favors MHC neighborhood, GM1 ganglioside proximity and low detergent sensitive membrane regions on the surface of B lymphocytes.","authors":"Dilip Shrestha, Mark A Exley, György Vereb, János Szöllősi, Attila Jenei","doi":"","DOIUrl":"","url":null,"abstract":"Background: Cluster of differentiation 1 (CD1) represents a family of proteins which is involved in lipid-based antigen presentation. Primarily, antigen presenting cells, like B cells, express CD1 proteins. Here, we examined the cell-surface distribution of CD1d, a subtype of CD1 receptors, on B lymphocytes.Methods: Fluorescence labeling methods, including fluorescence resonance energy transfer (FRET),were employed to investigate plasma membrane features of CD1d receptors.Results: High FRET efficiency was observed between CD1d and MHC I heavy chain (MHC I-HC), β2-microglobulin(β2m) and MHC II proteins in the plasma membrane. In addition, overexpression of CD1d reduced the expression of MHC II and increased the expression of MHC I-HC and β2m proteins on the cell-surface. Surprisingly, β2m dependent CD1d isoform constituted only ~15% of the total membrane CD1d proteins. Treatment of B cells with methyl-β-cyclodextrin (MβCD) / simvastatin caused protein rearrangement; however, FRET demonstrated only minimal effect of these chemicals on the association between CD1d and GM1 ganglioside on cell-surface.Likewise, a modest effect was only observed in a co-culture assay between MβCD/simvastatin treated C1R–CD1d cells and invariant natural killer T cells on measuring secreted cytokines (IFNγ and IL4). Furthermore,CD1d rich regions were highly sensitive to low concentration of Triton X-100. Physical proximity between CD1d, MHC and GM1 molecules was also detected in the plasma membrane.Conclusions: An intricate relationship between CD1d, MHC, and lipid species was found on the membrane of human B cells.General significance: Organization of CD1d on the plasma membrane might be critical for its biological functions.","PeriodicalId":8811,"journal":{"name":"Biochimica et biophysica acta","volume":"1840 1","pages":"667-80"},"PeriodicalIF":0.0,"publicationDate":"2014-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32078294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Identification of cis-regulatory variations in the IL6R gene through the inheritance assessment of allelic transcription. 通过等位基因转录的遗传评估鉴定IL6R基因的顺式调控变异。

Biochimica et biophysica acta Pub Date : 2014-01-01

Soo A Oh, Hyejin Byun, Eunsu Jang, Sangkyun Jeong

{"title":"Identification of cis-regulatory variations in the IL6R gene through the inheritance assessment of allelic transcription.","authors":"Soo A Oh, Hyejin Byun, Eunsu Jang, Sangkyun Jeong","doi":"","DOIUrl":"","url":null,"abstract":"Background: The level of circulating interleukin-6 receptor in human blood varies depending on the genetic and/or physiological causes, and has been implicated in the development of chronic inflammatory diseases.Method: The cis-regulatory effects of genetic variations on the transcription of interleukin-6 receptor gene, IL6R,were studied by assessing allelic transcriptions in the immortalized lymphocytes derived from unrelated and familial samples.Results: The assays for allelic transcription in the cells from unrelated subjects demonstrated an extensive and variable range of allelic transcriptional imbalances, suggesting an operation of multiple cis-regulations with varying degrees on the locus. Analysis of the familial samples illustrated the Mendelian inheritance of allelic transcriptions,enabling us to assign each haplotype allele into one of the 3 transcriptional strengths. A comparison of the allele structures based on the transcriptional attributes highlighted 2 SNP variations, rs952146 and rs4845617, as being associated with higher allelic transcription. Consistently, lymphocytes that were homozygous for the 2SNPs exhibited differences in their transcript levels depending on the haplotypes.Conclusion: Inheritance assessment of allelic transcription of IL6R identified 2 SNPs that are associated with transcriptional variation in cis.General significance: Our results not only demonstrate genetic variations that are associated with IL6R transcription in cis but also demonstrate an effective genetic approach for isolating cis-regulatory variations.","PeriodicalId":8811,"journal":{"name":"Biochimica et biophysica acta","volume":"1840 1","pages":"637-44"},"PeriodicalIF":0.0,"publicationDate":"2014-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32078291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Retraction notice to "Transcriptional regulation of the AT1 receptor gene in immortalized human trophoblast cells."[Biochim. Biophys. Acta 1680 (2004) 158-170]. “永生化人类滋养细胞中AT1受体基因的转录调控”的撤回通知[生物化学]。Biophys。学报[j]。

Biochimica et biophysica acta Pub Date : 2013-09-01

引用次数: 0

Altered hepatic retinyl ester concentration and acyl composition in response to alcohol consumption. 酒精摄入对肝脏视黄酰基酯浓度和酰基组成的影响

Biochimica et biophysica acta Pub Date : 2013-07-01

Robin D Clugston, Hongfeng Jiang, Man Xia Lee, Paul D Berk, Ira J Goldberg, Li-Shin Huang, William S Blaner

{"title":"Altered hepatic retinyl ester concentration and acyl composition in response to alcohol consumption.","authors":"Robin D Clugston, Hongfeng Jiang, Man Xia Lee, Paul D Berk, Ira J Goldberg, Li-Shin Huang, William S Blaner","doi":"","DOIUrl":"","url":null,"abstract":"Retinoids (vitamin A and its metabolites) are essential micronutrients that regulate many cellular processes. Greater than 70% of the body's retinoid reserves are stored in the liver as retinyl ester (RE). Chronic alcohol consumption induces depletion of hepatic retinoid stores, and the extent of this has been correlated with advancing stages of alcoholic liver disease. The goal of this study was to analyze the mechanisms responsible for depletion of hepatic RE stores by alcohol consumption A change in the fatty-acyl composition of RE in alcohol-fed mice was observed within two weeks after the start of alcohol consumption. Specifically, alcohol-feeding was associated with a significant decline in hepatic retinyl palmitate levels; however, total RE levels were maintained by a compensatory increase in levels of usually minor RE species, particularly retinyl oleate. Our data suggests that alcohol feeding initially stimulates a futile cycle of RE hydrolysis and synthesis, and that the change in RE acyl composition is associated with a change in the acyl composition of hepatic phosphatidylcholine. The alcohol-induced change in RE acyl composition was specific to the liver, and was not seen in lung or white adipose tissue. This shift in hepatic RE fatty acyl composition is a sensitive indicator of alcohol consumption and may be an early biomarker for events associated with the development of alcoholic liver disease.","PeriodicalId":8811,"journal":{"name":"Biochimica et biophysica acta","volume":"1831 7","pages":"1276-86"},"PeriodicalIF":0.0,"publicationDate":"2013-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31742397","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

The calcium-stimulated lipid A 3-O deacylase from Rhizobium etli is not essential for plant nodulation. 来自根瘤菌的钙刺激脂质A 3-O脱羧酶对植物结瘤不是必需的。

Biochimica et biophysica acta Pub Date : 2013-07-01

Christian Sohlenkamp, Christian R H Raetz, Brian O Ingram

{"title":"The calcium-stimulated lipid A 3-O deacylase from Rhizobium etli is not essential for plant nodulation.","authors":"Christian Sohlenkamp, Christian R H Raetz, Brian O Ingram","doi":"","DOIUrl":"","url":null,"abstract":"The lipid A component of lipopolysaccharide from the nitrogen-fixing plant endosymbiont, Rhizobium etli, is structurally very different from that found in most enteric bacteria. The lipid A from free-living R. etli is structurally heterogeneous and exists as a mixture of species which are either pentaacylated or tetraacylated. In contrast, the lipid A from R. etli bacteroids is reported to consist exclusively of tetraacylated lipid A species. The tetraacylated lipid A species in both cases lack a beta-hydroxymyristoyl chain at the 3-position of lipid A. Here, we show that the lipid A modification enzyme responsible for 3-O deacylation in R. etli is a homolog of the PagL protein originally described in Salmonella enterica sv. typhimurium. In contrast to the PagL proteins described from other species, R. etli PagL displays a calcium dependency. To determine the importance of the lipid A modification catalyzed by PagL, we isolated and characterized a R. etli mutant deficient in the pagL gene. Mass spectrometric analysis confirmed that the mutant strain was exclusively tetraacylated and radiochemical analysis revealed that 3-O deacylase activity was absent in membranes prepared from the mutant. The R. etli mutant was not impaired in its ability to form nitrogen-fixing nodules on Phaseolus vulgaris but it displayed slower nodulation kinetics relative to the wild-type strain. The lipid A modification catalyzed by R. etli PagL, therefore, is not required for nodulation but may play other roles such as protecting bacterial endosymbionts from plant immune responses during infection.","PeriodicalId":8811,"journal":{"name":"Biochimica et biophysica acta","volume":"1831 7","pages":"1250-9"},"PeriodicalIF":0.0,"publicationDate":"2013-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31743067","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Proceedings of IPK 2012, the 7th International Conference on Inhibitors of Protein Kinases. August 24-27, 2012. Warsaw, Poland. 2012第七届国际蛋白激酶抑制剂会议论文集。2012年8月24日至27日。华沙,波兰。

Biochimica et biophysica acta Pub Date : 2013-07-01

引用次数: 0

Structural identities of four glycosylated lipids in the oral bacterium Streptococcus mutans UA159. 口腔细菌变形链球菌UA159中四种糖基化脂质的结构特征。

Biochimica et biophysica acta Pub Date : 2013-07-01

Larry Sallans, José-Luis Giner, David J Kiemle, Jenny E Custer, Edna S Kaneshiro

{"title":"Structural identities of four glycosylated lipids in the oral bacterium Streptococcus mutans UA159.","authors":"Larry Sallans, José-Luis Giner, David J Kiemle, Jenny E Custer, Edna S Kaneshiro","doi":"","DOIUrl":"","url":null,"abstract":"The cariogenic bacterium Streptococcus mutans is an important dental pathogen that forms biofilms on tooth surfaces, which provide a protective niche for the bacterium where it secretes organic acids leading to the demineralization of tooth enamel. Lipids, especially glycolipids are likely to be key components of these biofilm matrices. The UA159 strain of S. mutans was among the earliest microorganisms to have its genome sequenced. While the lipids of other S. mutans strains have been identified and characterized, lipid analyses of UA159 have been limited to a few studies on its fatty acids. Here we report the structures of the four major glycolipids from stationary-phase S. mutans UA159 cells grown in standing cultures. These were shown to be monoglucosyldiacylglycerol (MGDAG), diglucosyldiacylglycerol (DGDAG), diglucosylmonoacylglycerol (DGMAG) and, glycerophosphoryldiglucosyldiacylglycerol (GPDGDAG). The structures were determined by high performance thin-layer chromatography, mass spectrometry and nuclear magnetic resonance spectroscopy. The glycolipids were identified by accurate, high resolution, and tandem mass spectrometry. The identities of the sugar units in the glycolipids were determined by a novel and highly efficient NMR method. All sugars were shown to have alpha-glycosidic linkages and DGMAG was shown to be acylated in the sn-1 position by NMR. This is the first observation of unsubstituted DGMAG in any organism and the first mass spectrometry data for GPDGDAG.","PeriodicalId":8811,"journal":{"name":"Biochimica et biophysica acta","volume":"1831 7","pages":"1239-49"},"PeriodicalIF":0.0,"publicationDate":"2013-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31743066","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Fatty acids induce leukotriene C4 synthesis in macrophages in a fatty acid binding protein-dependent manner. 脂肪酸以脂肪酸结合蛋白依赖的方式诱导巨噬细胞合成白三烯C4。

Biochimica et biophysica acta Pub Date : 2013-07-01

Eric K a Long, Kristina Hellberg, Rocio Foncea, Ann V Hertzel, Jill Suttles, David A Bernlohr

{"title":"Fatty acids induce leukotriene C4 synthesis in macrophages in a fatty acid binding protein-dependent manner.","authors":"Eric K a Long, Kristina Hellberg, Rocio Foncea, Ann V Hertzel, Jill Suttles, David A Bernlohr","doi":"","DOIUrl":"","url":null,"abstract":"Obesity results in increased macrophage recruitment to adipose tissue that promotes a chronic low-grade inflammatory state linked to increased fatty acid efflux from adipocytes. Activated macrophages produce a variety of pro-inflammatory lipids such as leukotriene C4 (LTC4) and 5-, 12-, and 15-hydroxyeicosatetraenoic acid (HETE) suggesting the hypothesis that fatty acids may stimulate eicosanoid synthesis. To assess if eicosanoid production increases with obesity, adipose tissue of leptin deficient ob/ob mice was analyzed. In ob/ob mice, LTC4 and 12-HETE levels increased in the visceral (but not subcutaneous) adipose depot while the 5-HETE levels decreased and 15-HETE abundance was unchanged. Since macrophages produce the majority of inflammatory molecules in adipose tissue, treatment of RAW264.7 or primary peritoneal macrophages with free fatty acids led to increased secretion of LTC4 and 5-HETE, but not 12- or 15-HETE. Fatty acid binding proteins (FABPs) facilitate the intracellular trafficking of fatty acids and other hydrophobic ligands and in vitro stabilize the LTC4 precursor leukotriene A4 (LTA4) from non-enzymatic hydrolysis. Consistent with a role for FABPs in LTC4 synthesis, treatment of macrophages with HTS01037, a specific FABP inhibitor, resulted in a marked decrease in both basal and fatty acid-stimulated LTC4 secretion but no change in 5-HETE production or 5-lipoxygenase expression. These results indicate that the products of adipocyte lipolysis may stimulate the 5-lipoxygenase pathway leading to FABP-dependent production of LTC4 and contribute to the insulin resistant state.","PeriodicalId":8811,"journal":{"name":"Biochimica et biophysica acta","volume":"1831 7","pages":"1199-207"},"PeriodicalIF":0.0,"publicationDate":"2013-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31743062","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0