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Bacterial community profiling of Malaysian drinking water reservoirs using metagenomic amplicon sequencing. 利用宏基因组扩增子测序分析马来西亚饮用水水库的细菌群落。
IF 2.5
BMC genomic data Pub Date : 2026-04-10 DOI: 10.1186/s12863-026-01422-w
Muhammad Farhan Roslan, Mohd Faiz Mat Saad, Suriyanti Su Nyun Pau, Syazwani Basir, Habsah Aziz, Muhamad Afiq Akbar, Hamidun Bunawan
{"title":"Bacterial community profiling of Malaysian drinking water reservoirs using metagenomic amplicon sequencing.","authors":"Muhammad Farhan Roslan, Mohd Faiz Mat Saad, Suriyanti Su Nyun Pau, Syazwani Basir, Habsah Aziz, Muhamad Afiq Akbar, Hamidun Bunawan","doi":"10.1186/s12863-026-01422-w","DOIUrl":"https://doi.org/10.1186/s12863-026-01422-w","url":null,"abstract":"","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2026-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147655483","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A curated database of rumen ciliate protozoal 18S rRNA gene sequences for metataxonomic applications. 整理的瘤胃纤毛原虫18S rRNA基因序列数据库，用于元分类应用。
IF 2.5
BMC genomic data Pub Date : 2026-04-03 DOI: 10.1186/s12863-026-01420-y
Katie Lawther, Ilma Tapio, Arturo Vera-Ponce de León, Velma T E Aho, Sharon A Huws, Nicholas J Dimonaco
{"title":"A curated database of rumen ciliate protozoal 18S rRNA gene sequences for metataxonomic applications.","authors":"Katie Lawther, Ilma Tapio, Arturo Vera-Ponce de León, Velma T E Aho, Sharon A Huws, Nicholas J Dimonaco","doi":"10.1186/s12863-026-01420-y","DOIUrl":"10.1186/s12863-026-01420-y","url":null,"abstract":"<p><strong>Objectives: </strong>Protozoa are key members of the rumen microbiome playing significant roles in nutrient cycling and methane production, yet are understudied. As rumen metataxonomic studies increasingly incorporate protozoal primers, the lack of curated dedicated reference databases limits accurate classification. This dataset was developed to address that gap and support future protozoa-focused rumen microbial analyses.</p><p><strong>Data description: </strong>The curated dataset comprises 228 rumen ciliate protozoal 18S rRNA gene sequences sourced from publicly available datasets. Sequences were processed to remove redundancy and standardise naming. The final database spans 23 families, 53 genera, and 100 species, and is suitable for use in metataxonomic pipelines, including QIIME2. It provides a valuable resource for researchers aiming to improve taxonomic resolution of protozoal communities in rumen environments.</p>","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2026-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13088586/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147617217","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A pilot study revealed the gut microbiota based on 16S rRNA metagenomics in gestational diabetes. 一项初步研究揭示了基于16S rRNA宏基因组学的妊娠糖尿病肠道微生物群。
IF 2.5
BMC genomic data Pub Date : 2026-03-28 DOI: 10.1186/s12863-026-01413-x
Rizwana Kousar, Sadia Latif, Mahrukh Zahoor, Sidra Tabassum
{"title":"A pilot study revealed the gut microbiota based on 16S rRNA metagenomics in gestational diabetes.","authors":"Rizwana Kousar, Sadia Latif, Mahrukh Zahoor, Sidra Tabassum","doi":"10.1186/s12863-026-01413-x","DOIUrl":"10.1186/s12863-026-01413-x","url":null,"abstract":"","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2026-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13151273/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147576673","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-genome resequencing datasets of four Alternaria isolates obtained from carrot seeds. 从胡萝卜种子中分离的4株互交菌全基因组重测序数据集。
IF 2.5
BMC genomic data Pub Date : 2026-03-20 DOI: 10.1186/s12863-026-01415-9
Yuhan Ma, Feiyun Zhuang, Zhiwei Zhao, Zeyang Liu, Xiangping Yan, Xing Liu, Chenggang Ou
{"title":"Whole-genome resequencing datasets of four Alternaria isolates obtained from carrot seeds.","authors":"Yuhan Ma, Feiyun Zhuang, Zhiwei Zhao, Zeyang Liu, Xiangping Yan, Xing Liu, Chenggang Ou","doi":"10.1186/s12863-026-01415-9","DOIUrl":"10.1186/s12863-026-01415-9","url":null,"abstract":"","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2026-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13126878/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147488564","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of Streptococcus shenyangsis isolated from buccal mucosa. 口腔黏膜沈阳链球菌全基因组序列分析。
IF 2.5
BMC genomic data Pub Date : 2026-03-19 DOI: 10.1186/s12863-026-01418-6
Seok Bin Yang, Doyun Ku, Kyu Hwan Kwack, Ji-Hoi Moon, Jae-Hyung Lee
{"title":"Complete genome sequence of Streptococcus shenyangsis isolated from buccal mucosa.","authors":"Seok Bin Yang, Doyun Ku, Kyu Hwan Kwack, Ji-Hoi Moon, Jae-Hyung Lee","doi":"10.1186/s12863-026-01418-6","DOIUrl":"10.1186/s12863-026-01418-6","url":null,"abstract":"","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2026-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13123132/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147488596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A curated list of immune system associated genes related to cancer. 一份与癌症有关的免疫系统相关基因的精选清单。
IF 2.5
BMC genomic data Pub Date : 2026-03-18 DOI: 10.1186/s12863-026-01414-w
Anjud Al-Mohannadi, Zainab Awada, Bernice Lo, Borbala Mifsud, Sara Deola
{"title":"A curated list of immune system associated genes related to cancer.","authors":"Anjud Al-Mohannadi, Zainab Awada, Bernice Lo, Borbala Mifsud, Sara Deola","doi":"10.1186/s12863-026-01414-w","DOIUrl":"10.1186/s12863-026-01414-w","url":null,"abstract":"","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2026-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13112774/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147482497","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Analysis of CGG repeat numbers in the FMR1 gene among women of childbearing age in Northeast Sichuan. 川东北育龄妇女FMR1基因CGG重复数分析
IF 2.5
BMC genomic data Pub Date : 2026-03-16 DOI: 10.1186/s12863-026-01417-7
Liping Chen, Xuemei Zhang, Yi Song, Li Chen, Yongjun He, Yang Li, Yan Cai, Qi Shi
{"title":"Analysis of CGG repeat numbers in the FMR1 gene among women of childbearing age in Northeast Sichuan.","authors":"Liping Chen, Xuemei Zhang, Yi Song, Li Chen, Yongjun He, Yang Li, Yan Cai, Qi Shi","doi":"10.1186/s12863-026-01417-7","DOIUrl":"10.1186/s12863-026-01417-7","url":null,"abstract":"","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2026-03-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13104335/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147470130","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring the NF-YC gene family in Astragalus membranaceus: characterization, evolutionary relationships, and expression pattern analysis under MeJA treatment. 探索黄芪NF-YC基因家族：表征、进化关系及MeJA处理下的表达模式分析
IF 2.5
BMC genomic data Pub Date : 2026-03-06 DOI: 10.1186/s12863-026-01412-y
Shengping Hu, Jun Fei, Yanghui Jin, Jinping Hu, Shiyuan Shi, Tianyi Cao
{"title":"Exploring the NF-YC gene family in Astragalus membranaceus: characterization, evolutionary relationships, and expression pattern analysis under MeJA treatment.","authors":"Shengping Hu, Jun Fei, Yanghui Jin, Jinping Hu, Shiyuan Shi, Tianyi Cao","doi":"10.1186/s12863-026-01412-y","DOIUrl":"10.1186/s12863-026-01412-y","url":null,"abstract":"","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2026-03-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13077951/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147370802","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome sequence and annotation of the edible mushroom Phlebopus roseus. 食用菌玫瑰花菇（Phlebopus roseus）基因组序列草图及注释。
IF 2.5
BMC genomic data Pub Date : 2026-03-04 DOI: 10.1186/s12863-026-01416-8
Mei Yang, Xiaolong Yuan, Yuanni Gao, Zhonghua Chen, Lingjia Kong, Zhonghua Huang, Liang Fang, Yi Wang, Chengyi Liu
{"title":"Draft genome sequence and annotation of the edible mushroom Phlebopus roseus.","authors":"Mei Yang, Xiaolong Yuan, Yuanni Gao, Zhonghua Chen, Lingjia Kong, Zhonghua Huang, Liang Fang, Yi Wang, Chengyi Liu","doi":"10.1186/s12863-026-01416-8","DOIUrl":"10.1186/s12863-026-01416-8","url":null,"abstract":"","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2026-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13067700/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147357825","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular characterization of cystinosis patients: predominance of the CTNS c.829dup mutation in Center of Tunisia. 胱氨酸病患者的分子特征：突尼斯中部CTNS c.829dup突变的优势
IF 2.5
BMC genomic data Pub Date : 2026-02-26 DOI: 10.1186/s12863-026-01411-z
Chayma Sahli, Sameh Mabrouk, Nesrine Jemmeli, Salsabil Nouir, Roua Ltaifa, Taieb Messaoud, Hassen Ben Abdennebi, Salima Ferchichi, Mohamed Ghorbel, Sandrine Laradi, Latifa Chkioua
{"title":"Molecular characterization of cystinosis patients: predominance of the CTNS c.829dup mutation in Center of Tunisia.","authors":"Chayma Sahli, Sameh Mabrouk, Nesrine Jemmeli, Salsabil Nouir, Roua Ltaifa, Taieb Messaoud, Hassen Ben Abdennebi, Salima Ferchichi, Mohamed Ghorbel, Sandrine Laradi, Latifa Chkioua","doi":"10.1186/s12863-026-01411-z","DOIUrl":"10.1186/s12863-026-01411-z","url":null,"abstract":"","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2026-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12958636/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147313047","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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