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The Complete Genome Sequence of Curcuma longa (Zingiberaceae, Zingiberales), Turmeric. 姜黄（姜科、姜属）的完整基因组序列。
Biodiversity genomes Pub Date : 2023-03-01 Epub Date: 2023-03-17 DOI: 10.56179/001c.73625
Zainab El Ouafi, Stacy Pirro, Najib Al Idrissi, Hassan Ghazal
{"title":"The Complete Genome Sequence of <i>Curcuma longa</i> (Zingiberaceae, Zingiberales), Turmeric.","authors":"Zainab El Ouafi, Stacy Pirro, Najib Al Idrissi, Hassan Ghazal","doi":"10.56179/001c.73625","DOIUrl":"10.56179/001c.73625","url":null,"abstract":"<p><p><i>Curcuma longa</i> is a perennial native to India and Southeast Asia. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR11229490) and assembled genome (JAOBBC000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10062376/pdf/nihms-1884921.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9400241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Chrysina resplendens (Scarabaeidae, Coleoptera) the Golden Jewel Scarab. 金玉圣甲虫（金龟子科，鞘翅目）全基因组序列。
Biodiversity genomes Pub Date : 2023-03-01 Epub Date: 2023-03-05 DOI: 10.56179/001c.72798
Douae El Ghoubali, Stacy Pirro, Chakib Nejjari, Hassan Ghazal
{"title":"The Complete Genome Sequence of <i>Chrysina resplendens</i> (Scarabaeidae, Coleoptera) the Golden Jewel Scarab.","authors":"Douae El Ghoubali, Stacy Pirro, Chakib Nejjari, Hassan Ghazal","doi":"10.56179/001c.72798","DOIUrl":"10.56179/001c.72798","url":null,"abstract":"<p><p><i>Chrysina resplendens</i> is a scarab beetle endemic to Central America. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single captive individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR5170512) and Assembly (JAADJY000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019531/pdf/nihms-1881135.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343284","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Verbascum thapsus (Scrophulariaceae, Lamiales), the Common Mullein. 普通毛蕊花属植物马鞭草（Scrophulariaceae, Lamiales）的完整基因组序列。
Biodiversity genomes Pub Date : 2023-03-01 Epub Date: 2023-03-07 DOI: 10.56179/001c.73050
Oussama Badad, Stacy Pirro, Qamar Lahlimi, Hassan Ghazal
{"title":"The Complete Genome Sequence of <i>Verbascum thapsus</i> (Scrophulariaceae, Lamiales), the Common Mullein.","authors":"Oussama Badad, Stacy Pirro, Qamar Lahlimi, Hassan Ghazal","doi":"10.56179/001c.73050","DOIUrl":"10.56179/001c.73050","url":null,"abstract":"<p><p><i>Verbascum thapsus</i> is a biennial plant native to Europe, northern Africa, and Asia and introduced in the Americas and Australia. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR18183247) and assembled genome (JAOXOC000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10062438/pdf/nihms-1885463.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9400240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 19 Species of Snipes (Scolopacidae, Charadriiformes, Aves). 19种鹬(鞘翅目，鞘翅目，鸟类)的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-04-21 DOI: 10.56179/001c.74632
João Marcos G Capurucho, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequences of 19 Species of Snipes (Scolopacidae, Charadriiformes, Aves).","authors":"João Marcos G Capurucho, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.74632","DOIUrl":"10.56179/001c.74632","url":null,"abstract":"<p><p>We present the complete genome sequences of 19 species of snipes from 7 genera. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10162776/pdf/nihms-1895121.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9439667","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Draft Genome Sequence of Dorometra sesokonis (Antedonidae, Comatulida, Crinoidea, Echinodermata). 一个Dorometra sesokonis的基因组序列草案（Antedonidae，Comatulida，Crinoidea，Echinodermata）。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-03-04 DOI: 10.56179/001c.72775
Riccardo Virgili, Angelo Poliseno, Stacy Pirro, James Davis Reimer
{"title":"A Draft Genome Sequence of <i>Dorometra sesokonis</i> (Antedonidae, Comatulida, Crinoidea, Echinodermata).","authors":"Riccardo Virgili, Angelo Poliseno, Stacy Pirro, James Davis Reimer","doi":"10.56179/001c.72775","DOIUrl":"10.56179/001c.72775","url":null,"abstract":"<p><p>We present the complete genome sequence of <i>Dorometra sesokonis</i>. Genome sequencing was performed on genetic material from a single wild-collected individual. The sequence reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019518/pdf/nihms-1881117.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 2 Species of Geukensia (Brachidontinae, Mytilidae). 2种钩虫的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-10-15 DOI: 10.56179/001c.89031
John P Wares, Stacy Pirro
{"title":"The Complete Genome Sequences of 2 Species of Geukensia (Brachidontinae, Mytilidae).","authors":"John P Wares, Stacy Pirro","doi":"10.56179/001c.89031","DOIUrl":"10.56179/001c.89031","url":null,"abstract":"<p><p>We present the complete genome sequences of <i>Geukensia demissa</i> and <i>Geukensia granosissima</i>. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10601176/pdf/nihms-1938360.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54232582","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of three species from the killifish genus Kryptolebias (Rivulidae, Cyprinodontiformes). 三种鳉鱼属（鲤科，鲤形目）的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-05-24 DOI: 10.56179/001c.77448
Waldir M Berbel-Filho, Stacy Pirro, Andrew W Thompson, Sergio M Q Lima, Sofia Consuegra, Ricardo Betancur
{"title":"The Complete Genome Sequences of three species from the killifish genus <i>Kryptolebias</i> (Rivulidae, Cyprinodontiformes).","authors":"Waldir M Berbel-Filho, Stacy Pirro, Andrew W Thompson, Sergio M Q Lima, Sofia Consuegra, Ricardo Betancur","doi":"10.56179/001c.77448","DOIUrl":"10.56179/001c.77448","url":null,"abstract":"<p><p>The killifish genus <i>Kryptolebias</i> currently contains seven recognized species found in freshwater and mangrove microhabitats in South and Central America, the Caribbean, and Florida. <i>Kryptolebias</i> species have several unique features. Beyond its amphibious nature, two of the <i>Kryptolebias</i> species (<i>K. marmoratus</i> and <i>K. hermaphroditus sensu</i> Costa 2011) are the only known vertebrates capable of self-fertilization. Although reference genomes for self-fertilizing species are readily available, a complete understanding of the genomic basis leading to the transition in mating systems in the genus requires more genomic resources at a broader taxonomic level. Here, we present the complete genome sequences for three <i>Kryptolebias</i> species from Brazil: the endangered freshwater species <i>Kryptolebias brasiliensis</i> and <i>Kryptolebias gracilis</i> and the androdiecious but obligate outcrossing <i>Kryptolebias ocellatus</i> (<i>sensu</i> Costa 2011). The raw data and assembled genomes are available in GenBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10361417/pdf/nihms-1905249.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9862956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Portunus pelagicus (Portunidae, Decapoda), the Blue Swimming Crab. 蓝游蟹（Portunus pelagicus）（Portunidae，十足目）的完整基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-11-20 DOI: 10.56179/001c.91279
Demian A Willette, Stacy Pirro, Luz R Romena, Mudjekeewis D Santos
{"title":"The Complete Genome Sequence of <i>Portunus pelagicus</i> (Portunidae, Decapoda), the Blue Swimming Crab.","authors":"Demian A Willette, Stacy Pirro, Luz R Romena, Mudjekeewis D Santos","doi":"10.56179/001c.91279","DOIUrl":"10.56179/001c.91279","url":null,"abstract":"<p><p><i>Portunus pelagicus</i> is a large crab found in the Indo-Pacific. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR25655135) and assembled genome (JAWWMC000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10745231/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139032853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of Iris sibirica and Iris virginica (Iridaceae, Asparagales). sibirica和virginica（鸢尾科，芦笋科）的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-03-05 DOI: 10.56179/001c.72791
Kuk-Jeong Chin, Stacy Pirro
{"title":"The Complete Genome Sequences of <i>Iris sibirica</i> and <i>Iris virginica</i> (Iridaceae, Asparagales).","authors":"Kuk-Jeong Chin, Stacy Pirro","doi":"10.56179/001c.72791","DOIUrl":"10.56179/001c.72791","url":null,"abstract":"<p><p>We present the complete genome sequences of <i>Iris sibirica</i> and <i>Iris virginica</i>. Illumina sequencing was performed on genetic material from individual cultivated specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019338/pdf/nihms-1881127.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343285","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Sarcoramphus papa (Cathartidae), the King Vulture. 秃鹰王的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-01-21 DOI: 10.56179/001c.68132
Therese A Catanach, Stacy Pirro
{"title":"The Complete Genome Sequence of <i>Sarcoramphus papa</i> (Cathartidae), the King Vulture.","authors":"Therese A Catanach, Stacy Pirro","doi":"10.56179/001c.68132","DOIUrl":"10.56179/001c.68132","url":null,"abstract":"<p><p><i>Sarcoramphus papa</i> is a New World Vulture found predominantly in tropical lowland forests stretching from southern Mexico to northern Argentina. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR19167646) and assembled genome (GCA_027580115).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":"6-7"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/fa/30/nihms-1868244.PMC9897284.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9342099","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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