Acta Neuropathologica Communications最新文献

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Systematic transcriptomic analysis of childhood medulloblastoma identifies N6-methyladenosine-dependent lncRNA signatures associated with molecular subtype, immune cell infiltration, and prognosis. 儿童髓母细胞瘤的系统转录组分析发现了与分子亚型、免疫细胞浸润和预后相关的N6-甲基腺苷依赖性lncRNA特征。
IF 6.2 2区 医学
Acta Neuropathologica Communications Pub Date : 2024-08-28 DOI: 10.1186/s40478-024-01848-2
Kandarp Joshi, Menglang Yuan, Keisuke Katsushima, Olivier Saulnier, Animesh Ray, Ernest Amankwah, Stacie Stapleton, George Jallo, Michael D Taylor, Charles G Eberhart, Ranjan J Perera
{"title":"Systematic transcriptomic analysis of childhood medulloblastoma identifies N6-methyladenosine-dependent lncRNA signatures associated with molecular subtype, immune cell infiltration, and prognosis.","authors":"Kandarp Joshi, Menglang Yuan, Keisuke Katsushima, Olivier Saulnier, Animesh Ray, Ernest Amankwah, Stacie Stapleton, George Jallo, Michael D Taylor, Charles G Eberhart, Ranjan J Perera","doi":"10.1186/s40478-024-01848-2","DOIUrl":"10.1186/s40478-024-01848-2","url":null,"abstract":"<p><p>Medulloblastoma, the most common malignant pediatric brain tumor, is classified into four main molecular subgroups, but group 3 and group 4 tumors are difficult to subclassify and have a poor prognosis. Rapid point-of-care diagnostic and prognostic assays are needed to improve medulloblastoma risk stratification and management. N6-methyladenosine (m6A) is a common RNA modification and long non-coding RNAs (lncRNAs) play a central role in tumor progression, but their impact on gene expression and associated clinical outcomes in medulloblastoma are unknown. Here we analyzed 469 medulloblastoma tumor transcriptomes to identify lncRNAs co-expressed with m6A regulators. Using LASSO-Cox analysis, we identified a five-gene m6A-associated lncRNA signature (M6LSig) significantly associated with overall survival, which was combined in a prognostic clinical nomogram. Using expression of the 67 m6A-associated lncRNAs, a subgroup classification model was generated using the XGBoost machine learning algorithm, which had a classification accuracy > 90%, including for group 3 and 4 samples. All M6LSig genes were significantly correlated with at least one immune cell type abundance in the tumor microenvironment, and the risk score was positively correlated with CD4<sup>+</sup> naïve T cell abundance and negatively correlated with follicular helper T cells and eosinophils. Knockdown of key m6A writer genes METTL3 and METTL14 in a group 3 medulloblastoma cell line (D425-Med) decreased cell proliferation and upregulated many M6LSig genes identified in our in silico analysis, suggesting that the signature genes are functional in medulloblastoma. This study highlights a crucial role for m6A-dependent lncRNAs in medulloblastoma prognosis and immune responses and provides the foundation for practical clinical tools that can be rapidly deployed in clinical settings.</p>","PeriodicalId":6914,"journal":{"name":"Acta Neuropathologica Communications","volume":"12 1","pages":"138"},"PeriodicalIF":6.2,"publicationDate":"2024-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11351195/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142091374","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A deep phenotyping study in mouse and iPSC models to understand the role of oligodendroglia in optic neuropathy in Wolfram syndrome. 在小鼠和 iPSC 模型中进行深度表型研究,以了解少突胶质细胞在沃尔夫拉姆综合征视神经病变中的作用。
IF 6.2 2区 医学
Acta Neuropathologica Communications Pub Date : 2024-08-28 DOI: 10.1186/s40478-024-01851-7
K Ahuja, M Vandenabeele, F Nami, E Lefevere, J Van Hoecke, S Bergmans, M Claes, T Vervliet, K Neyrinck, T Burg, D De Herdt, P Bhaskar, Y Zhu, Z J Looser, J Loncke, W Gsell, M Plaas, P Agostinis, J V Swinnen, L Van Den Bosch, G Bultynck, A S Saab, E Wolfs, Y C Chai, U Himmelreich, C Verfaillie, L Moons, L De Groef
{"title":"A deep phenotyping study in mouse and iPSC models to understand the role of oligodendroglia in optic neuropathy in Wolfram syndrome.","authors":"K Ahuja, M Vandenabeele, F Nami, E Lefevere, J Van Hoecke, S Bergmans, M Claes, T Vervliet, K Neyrinck, T Burg, D De Herdt, P Bhaskar, Y Zhu, Z J Looser, J Loncke, W Gsell, M Plaas, P Agostinis, J V Swinnen, L Van Den Bosch, G Bultynck, A S Saab, E Wolfs, Y C Chai, U Himmelreich, C Verfaillie, L Moons, L De Groef","doi":"10.1186/s40478-024-01851-7","DOIUrl":"10.1186/s40478-024-01851-7","url":null,"abstract":"<p><p>Wolfram syndrome (WS) is a rare childhood disease characterized by diabetes mellitus, diabetes insipidus, blindness, deafness, neurodegeneration and eventually early death, due to autosomal recessive mutations in the WFS1 (and WFS2) gene. While it is categorized as a neurodegenerative disease, it is increasingly becoming clear that other cell types besides neurons may be affected and contribute to the pathogenesis. MRI studies in patients and phenotyping studies in WS rodent models indicate white matter/myelin loss, implicating a role for oligodendroglia in WS-associated neurodegeneration. In this study, we sought to determine if oligodendroglia are affected in WS and whether their dysfunction may be the primary cause of the observed optic neuropathy and brain neurodegeneration. We demonstrate that 7.5-month-old Wfs1<sup>∆exon8</sup> mice display signs of abnormal myelination and a reduced number of oligodendrocyte precursor cells (OPCs) as well as abnormal axonal conduction in the optic nerve. An MRI study of the brain furthermore revealed grey and white matter loss in the cerebellum, brainstem, and superior colliculus, as is seen in WS patients. To further dissect the role of oligodendroglia in WS, we performed a transcriptomics study of WS patient iPSC-derived OPCs and pre-myelinating oligodendrocytes. Transcriptional changes compared to isogenic control cells were found for genes with a role in ER function. However, a deep phenotyping study of these WS patient iPSC-derived oligodendroglia unveiled normal differentiation, mitochondria-associated endoplasmic reticulum (ER) membrane interactions and mitochondrial function, and no overt signs of ER stress. Overall, the current study indicates that oligodendroglia functions are largely preserved in the WS mouse and patient iPSC-derived models used in this study. These findings do not support a major defect in oligodendroglia function as the primary cause of WS, and warrant further investigation of neurons and neuron-oligodendroglia interactions as a target for future neuroprotective or -restorative treatments for WS.</p>","PeriodicalId":6914,"journal":{"name":"Acta Neuropathologica Communications","volume":"12 1","pages":"140"},"PeriodicalIF":6.2,"publicationDate":"2024-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11351506/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142091373","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genetic and pathophysiological insights from autopsied patient with primary familial brain calcification: novel MYORG variants and astrocytic implications. 从原发性家族性脑钙化患者尸检中获得的遗传学和病理生理学启示:新型 MYORG 变异和对星形胶质细胞的影响。
IF 6.2 2区 医学
Acta Neuropathologica Communications Pub Date : 2024-08-23 DOI: 10.1186/s40478-024-01847-3
Takahiro Hobara, Yujiro Higuchi, Mari Yoshida, Masahito Suehara, Masahiro Ando, Jun-Hui Yuan, Akiko Yoshimura, Fumikazu Kojima, Eiji Matsuura, Yuji Okamoto, Jun Mitsui, Shoji Tsuji, Hiroshi Takashima
{"title":"Genetic and pathophysiological insights from autopsied patient with primary familial brain calcification: novel MYORG variants and astrocytic implications.","authors":"Takahiro Hobara, Yujiro Higuchi, Mari Yoshida, Masahito Suehara, Masahiro Ando, Jun-Hui Yuan, Akiko Yoshimura, Fumikazu Kojima, Eiji Matsuura, Yuji Okamoto, Jun Mitsui, Shoji Tsuji, Hiroshi Takashima","doi":"10.1186/s40478-024-01847-3","DOIUrl":"10.1186/s40478-024-01847-3","url":null,"abstract":"<p><p>Primary familial brain calcification (PFBC) is a genetic neurological disorder characterized by symmetric brain calcifications that manifest with variable neurological symptoms. This study aimed to explore the genetic basis of PFBC and elucidate the underlying pathophysiological mechanisms. Six patients from four pedigrees with brain calcification were enrolled. Whole-exome sequencing identified two novel homozygous variants, c.488G > T (p.W163L) and c.2135G > A (p.W712*), within the myogenesis regulating glycosidase (MYORG) gene. Cerebellar ataxia (n = 5) and pyramidal signs (n = 4) were predominant symptoms, with significant clinical heterogeneity noted even within the same family. An autopsy of one patient revealed extensive brainstem calcifications, sparing the cerebral cortex, and marked by calcifications predominantly in capillaries and arterioles. The pathological study suggested morphological alterations characterized by shortened foot processes within astrocytes in regions with pronounced calcification and decreased immunoreactivity of AQP4. The morphology of astrocytes in regions without calcification remains preserved. Neuronal loss and gliosis were observed in the basal ganglia, thalamus, brainstem, cerebellum, and dentate nucleus. Notably, olivary hypertrophy, a previously undescribed feature in MYORG-PFBC, was discovered. Neuroimaging showed reduced blood flow in the cerebellum, highlighting the extent of cerebellar involvement. Among perivascular cells constituting the blood-brain barrier (BBB) and neurovascular unit, MYORG is most highly expressed in astrocytes. Astrocytes are integral components of the BBB, and their dysfunction can precipitate BBB disruption, potentially leading to brain calcification and subsequent neuronal loss. This study presents two novel homozygous variants in the MYORG gene and highlights the pivotal role of astrocytes in the development of brain calcifications, providing insights into the pathophysiological mechanisms underlying PFBC associated with MYORG variants.</p>","PeriodicalId":6914,"journal":{"name":"Acta Neuropathologica Communications","volume":"12 1","pages":"136"},"PeriodicalIF":6.2,"publicationDate":"2024-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11342542/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142046148","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Oral nicotinamide provides robust, dose-dependent structural and metabolic neuroprotection of retinal ganglion cells in experimental glaucoma. 在实验性青光眼中,口服烟酰胺可对视网膜神经节细胞的结构和代谢产生强有力的、剂量依赖性的神经保护作用。
IF 6.2 2区 医学
Acta Neuropathologica Communications Pub Date : 2024-08-23 DOI: 10.1186/s40478-024-01850-8
Gloria Cimaglia, James R Tribble, Marcela Votruba, Pete A Williams, James E Morgan
{"title":"Oral nicotinamide provides robust, dose-dependent structural and metabolic neuroprotection of retinal ganglion cells in experimental glaucoma.","authors":"Gloria Cimaglia, James R Tribble, Marcela Votruba, Pete A Williams, James E Morgan","doi":"10.1186/s40478-024-01850-8","DOIUrl":"10.1186/s40478-024-01850-8","url":null,"abstract":"<p><p>A compromised capacity to maintain NAD pools is recognized as a key underlying pathophysiological feature of neurodegenerative diseases. NAD acts as a substrate in major cell functions including mitochondrial homeostasis, cell signalling, axonal transport, axon/Wallerian degeneration, and neuronal energy supply. Dendritic degeneration is an early marker of neuronal stress and precedes cell loss. However, little is known about dendritic structural preservation in pathologic environments and remodelling in mature neurons. Retinal ganglion cell dendritic atrophy is an early pathological feature in animal models of the disease and has been demonstrated in port-mortem human glaucoma samples. Here we report that a nicotinamide (a precursor to NAD through the NAD salvage pathway) enriched diet provides robust retinal ganglion cell dendritic protection and preserves dendritic structure in a rat model of experimental glaucoma. Metabolomic analysis of optic nerve samples from the same animals demonstrates that nicotinamide provides robust metabolic neuroprotection in glaucoma. Advances in our understanding of retinal ganglion cell metabolic profiles shed light on the energetic shift that triggers early neuronal changes in neurodegenerative diseases. As nicotinamide can improve visual function short term in existing glaucoma patients, we hypothesize that a portion of this visual recovery may be due to dendritic preservation in stressed, but not yet fully degenerated, retinal ganglion cells.</p>","PeriodicalId":6914,"journal":{"name":"Acta Neuropathologica Communications","volume":"12 1","pages":"137"},"PeriodicalIF":6.2,"publicationDate":"2024-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11342512/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142046149","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Urinary D-asparagine level is decreased by the presence of glioblastoma. 尿液中的 D-天冬酰胺水平会因胶质母细胞瘤的存在而降低。
IF 6.2 2区 医学
Acta Neuropathologica Communications Pub Date : 2024-08-20 DOI: 10.1186/s40478-024-01836-6
Yusuke Nakade, Masashi Kinoshita, Mitsutoshi Nakada, Hemragul Sabit, Toshiya Ichinose, Masashi Mita, Takeo Yuno, Moeko Noguchi-Shinohara, Kenjiro Ono, Yasunori Iwata, Takashi Wada
{"title":"Urinary D-asparagine level is decreased by the presence of glioblastoma.","authors":"Yusuke Nakade, Masashi Kinoshita, Mitsutoshi Nakada, Hemragul Sabit, Toshiya Ichinose, Masashi Mita, Takeo Yuno, Moeko Noguchi-Shinohara, Kenjiro Ono, Yasunori Iwata, Takashi Wada","doi":"10.1186/s40478-024-01836-6","DOIUrl":"10.1186/s40478-024-01836-6","url":null,"abstract":"<p><p>Gliomas, particularly glioblastomas (GBMs), pose significant challenges due to their aggressiveness and poor prognosis. Early detection through biomarkers is critical for improving outcomes. This study aimed to identify novel biomarkers for gliomas, particularly GBMs, using chiral amino acid profiling. We used chiral amino acid analysis to measure amino acid L- and D-isomer levels in resected tissues (tumor and non-tumor), blood, and urine from 33 patients with primary gliomas and 24 healthy volunteers. The levels of D-amino acid oxidase (DAO), a D-amino acid-degrading enzyme, were evaluated to investigate the D-amino acid metabolism in brain tissue. The GBM mouse model was created by transplanting GBM cells into the brain to confirm whether gliomas affect blood and urine chiral amino acid profiles. We also assessed whether D-amino acids produced by GBM cells are involved in cell proliferation. D-asparagine (D-Asn) levels were higher and DAO expression was lower in glioma than in non-glioma tissues. Blood and urinary D-Asn levels were lower in patients with GBM than in healthy volunteers (p < 0.001), increasing after GBM removal (p < 0.05). Urinary D-Asn levels differentiated between healthy volunteers and patients with GBM (area under the curve: 0.93, sensitivity: 0.88, specificity: 0.92). GBM mouse model validated the decrease of urinary D-Asn in GBM. GBM cells used D-Asn for cell proliferation. Gliomas induce alterations in chiral amino acid profiles, affecting blood and urine levels. Urinary D-Asn emerges as a promising diagnostic biomarker for gliomas, reflecting tumor presence and severity.</p>","PeriodicalId":6914,"journal":{"name":"Acta Neuropathologica Communications","volume":"12 1","pages":"122"},"PeriodicalIF":6.2,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11337596/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142008051","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MAPT haplotype-associated transcriptomic changes in progressive supranuclear palsy. 进行性核上性麻痹的 MAPT 单倍型相关转录组变化。
IF 6.2 2区 医学
Acta Neuropathologica Communications Pub Date : 2024-08-17 DOI: 10.1186/s40478-024-01839-3
Hadley W Ressler, Jack Humphrey, Ricardo A Vialle, Bergan Babrowicz, Shrishtee Kandoi, Towfique Raj, Dennis W Dickson, Nilüfer Ertekin-Taner, John F Crary, Kurt Farrell
{"title":"MAPT haplotype-associated transcriptomic changes in progressive supranuclear palsy.","authors":"Hadley W Ressler, Jack Humphrey, Ricardo A Vialle, Bergan Babrowicz, Shrishtee Kandoi, Towfique Raj, Dennis W Dickson, Nilüfer Ertekin-Taner, John F Crary, Kurt Farrell","doi":"10.1186/s40478-024-01839-3","DOIUrl":"10.1186/s40478-024-01839-3","url":null,"abstract":"<p><p>Progressive supranuclear palsy (PSP) is a neurodegenerative movement and cognitive disorder characterized by abnormal accumulation of the microtubule-associated protein tau in the brain. Biochemically, inclusions in PSP are enriched for tau proteoforms with four microtubule-binding domain repeats (4R), an isoform that arises from alternative tau pre-mRNA splicing. While preferential aggregation and reduced degradation of 4R tau protein is thought to play a role in inclusion formation and toxicity, an alternative hypothesis is that altered expression of tau mRNA isoforms plays a causal role. This stems from the observation that PSP is associated with common variation in the tau gene (MAPT) at the 17q21.31 locus which contains low copy number repeats flanking a large recurrent genomic inversion. The complex genomic structural changes at the locus give rise to two dominant haplotypes, termed H1 and H2, that have the potential to markedly influence gene expression. Here, we explored haplotype-dependent differences in gene expression using a bulk RNA-seq dataset derived from human post-mortem brain tissue from PSP (n = 84) and controls (n = 77) using a rigorous computational pipeline, including alternative pre-mRNA splicing. We found 3579 differentially expressed genes in the temporal cortex and 10,011 in the cerebellum. We also found 7214 differential splicing events in the temporal cortex and 18,802 in the cerebellum. In the cerebellum, total tau mRNA levels and the proportion of transcripts encoding 4R tau were significantly increased in PSP compared to controls. In the temporal cortex, the proportion of reads that expressed 4R tau was increased in cases compared to controls. 4R tau mRNA levels were significantly associated with the H1 haplotype in the temporal cortex. Further, we observed a marked haplotype-dependent difference in KANSL1 expression that was strongly associated with H1 in both brain regions. These findings support the hypothesis that sporadic PSP is associated with haplotype-dependent increases in 4R tau mRNA that might play a causal role in this disorder.</p>","PeriodicalId":6914,"journal":{"name":"Acta Neuropathologica Communications","volume":"12 1","pages":"135"},"PeriodicalIF":6.2,"publicationDate":"2024-08-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11330133/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141995045","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Machine learning quantification of Amyloid-β deposits in the temporal lobe of 131 brain bank cases. 通过机器学习量化 131 例脑库病例颞叶中的淀粉样蛋白-β沉积。
IF 6.2 2区 医学
Acta Neuropathologica Communications Pub Date : 2024-08-17 DOI: 10.1186/s40478-024-01827-7
Rebeca Scalco, Luca C Oliveira, Zhengfeng Lai, Danielle J Harvey, Lana Abujamil, Charles DeCarli, Lee-Way Jin, Chen-Nee Chuah, Brittany N Dugger
{"title":"Machine learning quantification of Amyloid-β deposits in the temporal lobe of 131 brain bank cases.","authors":"Rebeca Scalco, Luca C Oliveira, Zhengfeng Lai, Danielle J Harvey, Lana Abujamil, Charles DeCarli, Lee-Way Jin, Chen-Nee Chuah, Brittany N Dugger","doi":"10.1186/s40478-024-01827-7","DOIUrl":"10.1186/s40478-024-01827-7","url":null,"abstract":"<p><p>Accurate and scalable quantification of amyloid-β (Aβ) pathology is crucial for deeper disease phenotyping and furthering research in Alzheimer Disease (AD). This multidisciplinary study addresses the current limitations on neuropathology by leveraging a machine learning (ML) pipeline to perform a granular quantification of Aβ deposits and assess their distribution in the temporal lobe. Utilizing 131 whole-slide-images from consecutive autopsied cases at the University of California Davis Alzheimer Disease Research Center, our objectives were threefold: (1) Validate an automatic workflow for Aβ deposit quantification in white matter (WM) and gray matter (GM); (2) define the distributions of different Aβ deposit types in GM and WM, and (3) investigate correlates of Aβ deposits with dementia status and the presence of mixed pathology. Our methodology highlights the robustness and efficacy of the ML pipeline, demonstrating proficiency akin to experts' evaluations. We provide comprehensive insights into the quantification and distribution of Aβ deposits in the temporal GM and WM revealing a progressive increase in tandem with the severity of established diagnostic criteria (NIA-AA). We also present correlations of Aβ load with clinical diagnosis as well as presence/absence of mixed pathology. This study introduces a reproducible workflow, showcasing the practical use of ML approaches in the field of neuropathology, and use of the output data for correlative analyses. Acknowledging limitations, such as potential biases in the ML model and current ML classifications, we propose avenues for future research to refine and expand the methodology. We hope to contribute to the broader landscape of neuropathology advancements, ML applications, and precision medicine, paving the way for deep phenotyping of AD brain cases and establishing a foundation for further advancements in neuropathological research.</p>","PeriodicalId":6914,"journal":{"name":"Acta Neuropathologica Communications","volume":"12 1","pages":"134"},"PeriodicalIF":6.2,"publicationDate":"2024-08-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11330038/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141995044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Distinct tumor-TAM interactions in IDH-stratified glioma microenvironments unveiled by single-cell and spatial transcriptomics. 单细胞和空间转录组学揭示 IDH 分层胶质瘤微环境中不同的肿瘤-TAM 相互作用
IF 6.2 2区 医学
Acta Neuropathologica Communications Pub Date : 2024-08-16 DOI: 10.1186/s40478-024-01837-5
Meysam Motevasseli, Maryam Darvishi, Alireza Khoshnevisan, Mehdi Zeinalizadeh, Hiva Saffar, Shiva Bayat, Ali Najafi, Mohammad Javad Abbaspour, Ali Mamivand, Susan B Olson, Mina Tabrizi
{"title":"Distinct tumor-TAM interactions in IDH-stratified glioma microenvironments unveiled by single-cell and spatial transcriptomics.","authors":"Meysam Motevasseli, Maryam Darvishi, Alireza Khoshnevisan, Mehdi Zeinalizadeh, Hiva Saffar, Shiva Bayat, Ali Najafi, Mohammad Javad Abbaspour, Ali Mamivand, Susan B Olson, Mina Tabrizi","doi":"10.1186/s40478-024-01837-5","DOIUrl":"10.1186/s40478-024-01837-5","url":null,"abstract":"<p><p>Tumor-associated macrophages (TAMs) residing in the tumor microenvironment (TME) are characterized by their pivotal roles in tumor progression, antitumor immunity, and TME remodeling. However, a thorough comparative characterization of tumor-TAM crosstalk across IDH-defined categories of glioma remains elusive, likely contributing to mixed outcomes in clinical trials. We delineated the phenotypic heterogeneity of TAMs across IDH-stratified gliomas. Notably, two TAM subsets with a mesenchymal phenotype were enriched in IDH-WT glioblastoma (GBM) and correlated with poorer patient survival and reduced response to anti-PD-1 immune checkpoint inhibitor (ICI). We proposed SLAMF9 receptor as a potential therapeutic target. Inference of gene regulatory networks identified PPARG, ELK1, and MXI1 as master transcription factors of mesenchymal BMD-TAMs. Our analyses of reciprocal tumor-TAM interactions revealed distinct crosstalk in IDH-WT tumors, including ANXA1-FPR1/3, FN1-ITGAVB1, VEGFA-NRP1, and TNFSF12-TNFRSF12A with known contribution to immunosuppression, tumor proliferation, invasion and TAM recruitment. Spatially resolved transcriptomics further elucidated the architectural organization of highlighted communications. Furthermore, we demonstrated significant upregulation of ANXA1, FN1, NRP1, and TNFRSF12A genes in IDH-WT tumors using bulk RNA-seq and RT-qPCR. Longitudinal expression analysis of candidate genes revealed no difference between primary and recurrent tumors indicating that the interactive network of malignant states with TAMs does not drastically change upon recurrence. Collectively, our study offers insights into the unique cellular composition and communication of TAMs in glioma TME, revealing novel vulnerabilities for therapeutic interventions in IDH-WT GBM.</p>","PeriodicalId":6914,"journal":{"name":"Acta Neuropathologica Communications","volume":"12 1","pages":"133"},"PeriodicalIF":6.2,"publicationDate":"2024-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11328419/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141987136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction: Cleaved TMEM106B forms amyloid aggregates in central and peripheral nervous systems. 更正:已裂解的 TMEM106B 在中枢和外周神经系统中形成淀粉样蛋白聚集体。
IF 6.2 2区 医学
Acta Neuropathologica Communications Pub Date : 2024-08-14 DOI: 10.1186/s40478-024-01842-8
Mehtap Bacioglu, Mehtap Bacioglu, Derrick Gray, Sofia Lövestam, Taxiarchis Katsinelos, Annelies Quaegebeur, John van Swieten, Zane Jaunmuktane, Stephen W Davies, Sjors H W Scheres, Michel Goedert, Bernardino Ghetti, Maria Grazia Spillantini
{"title":"Correction: Cleaved TMEM106B forms amyloid aggregates in central and peripheral nervous systems.","authors":"Mehtap Bacioglu, Mehtap Bacioglu, Derrick Gray, Sofia Lövestam, Taxiarchis Katsinelos, Annelies Quaegebeur, John van Swieten, Zane Jaunmuktane, Stephen W Davies, Sjors H W Scheres, Michel Goedert, Bernardino Ghetti, Maria Grazia Spillantini","doi":"10.1186/s40478-024-01842-8","DOIUrl":"10.1186/s40478-024-01842-8","url":null,"abstract":"","PeriodicalId":6914,"journal":{"name":"Acta Neuropathologica Communications","volume":"12 1","pages":"131"},"PeriodicalIF":6.2,"publicationDate":"2024-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11323682/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141974748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Astrocyte tau deposition in progressive supranuclear palsy is associated with dysregulation of MAPT transcription. 进行性核上性麻痹的星形胶质细胞 tau 沉积与 MAPT 转录失调有关。
IF 6.2 2区 医学
Acta Neuropathologica Communications Pub Date : 2024-08-14 DOI: 10.1186/s40478-024-01844-6
Rosemary J Jackson, Alexandra Melloni, Dustin P Fykstra, Alberto Serrano-Pozo, Leslie Shinobu, Bradley T Hyman
{"title":"Astrocyte tau deposition in progressive supranuclear palsy is associated with dysregulation of MAPT transcription.","authors":"Rosemary J Jackson, Alexandra Melloni, Dustin P Fykstra, Alberto Serrano-Pozo, Leslie Shinobu, Bradley T Hyman","doi":"10.1186/s40478-024-01844-6","DOIUrl":"10.1186/s40478-024-01844-6","url":null,"abstract":"<p><p>Progressive supranuclear palsy (PSP) is a neurodegenerative disease characterized by 4R tau deposition in neurons as well as in astrocytes and oligodendrocytes. While astrocytic tau deposits are rarely observed in normal aging (so-called aging-related tau astrogliopathy, ARTAG) and Alzheimer's disease (AD), astrocytic tau in the form of tufted astrocytes is a pathognomonic hallmark of PSP. Classical biochemical experiments emphasized tau synthesis in neurons in the central nervous system, suggesting that astrocytic tau inclusions might be derived from uptake of extracellular neuronal-derived tau. However, recent single-nucleus RNAseq experiments highlight the fact that MAPT, the gene encoding tau, is also expressed by astrocytes, albeit in lower amounts. We, therefore, revisited the question of whether astrocyte-driven expression of tau might contribute to astrocytic tau aggregates in PSP by performing fluorescent in situ hybridization/immunohistochemical co-localization in human postmortem brain specimens from individuals with PSP and AD with ARTAG as well as normal controls. We find that, in PSP but not in AD, tau-immunoreactive astrocytes have higher levels of MAPT mRNA compared to astrocytes that do not have tau aggregates. These results suggest that astrocytic responses in PSP are unique to this tauopathy and support the possibility that fundamental changes in PSP astrocyte-endogenous mRNA biology contribute to increased synthesis of tau protein and underlies the formation of the astrocytic tau deposits characteristic of PSP.</p>","PeriodicalId":6914,"journal":{"name":"Acta Neuropathologica Communications","volume":"12 1","pages":"132"},"PeriodicalIF":6.2,"publicationDate":"2024-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11323491/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141974747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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