Journal of the American Society for Mass Spectrometry最新文献

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Writing with Mass-Selected Ions Using a Dynamic Field Wien Filter 使用动态场维恩滤波器写入质量选择离子
IF 3.1 2区 化学
Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-10 DOI: 10.1021/jasms.4c0027410.1021/jasms.4c00274
Michael F. Espenship,  and , Julia Laskin*, 
{"title":"Writing with Mass-Selected Ions Using a Dynamic Field Wien Filter","authors":"Michael F. Espenship,&nbsp; and ,&nbsp;Julia Laskin*,&nbsp;","doi":"10.1021/jasms.4c0027410.1021/jasms.4c00274","DOIUrl":"https://doi.org/10.1021/jasms.4c00274https://doi.org/10.1021/jasms.4c00274","url":null,"abstract":"<p >We have designed and constructed a low-cost Wien filter based on strong permanent magnets and integrated it into an ion soft-landing instrument to enable parallel deposition as well as one- and two-dimensional surface patterning of mass-selected ions using dynamic fields. We show the capabilities of this device for separating ions from a multicomponent high-flux continuous ion beam and simultaneous deposition of ions of different mass-to-charge ratios onto discrete locations on a surface. When a dynamic electric field is applied parallel to the magnetic field, ions are deposited in one-dimensional arrays, laterally separated by mass. The field’s strength, frequency, and waveform type determine both the lengths of the arrays and the density of ions across the 1-D pattern. Additionally, a second dynamic field from user-defined waveforms orthogonal to the magnetic field enables two-dimensional surface patterning of ions while maintaining mass separation. These experiments demonstrate the practical utility of a Wien filter for the controlled fabrication of interfaces with arbitrary patterns of mass-selected ions.</p>","PeriodicalId":672,"journal":{"name":"Journal of the American Society for Mass Spectrometry","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142407986","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dynamics of the Aspiration of Charged Droplets into a LC-ESI-MS System 带电液滴吸入 LC-ESI-MS 系统的动力学原理
IF 3.1 2区 化学
Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-10 DOI: 10.1021/jasms.4c0023810.1021/jasms.4c00238
Patricia Itzenhäuser, Ferdinand Max Wachter, Laura Lehmann, Michelle Rajkovic, Thorsten Benter and Walter Wißdorf*, 
{"title":"Dynamics of the Aspiration of Charged Droplets into a LC-ESI-MS System","authors":"Patricia Itzenhäuser,&nbsp;Ferdinand Max Wachter,&nbsp;Laura Lehmann,&nbsp;Michelle Rajkovic,&nbsp;Thorsten Benter and Walter Wißdorf*,&nbsp;","doi":"10.1021/jasms.4c0023810.1021/jasms.4c00238","DOIUrl":"https://doi.org/10.1021/jasms.4c00238https://doi.org/10.1021/jasms.4c00238","url":null,"abstract":"<p >Electrospray ionization (ESI) enables coupling between liquid chromatography (LC) and mass spectrometry (MS). Since it is a gentle ionization method, it is frequently used for the analysis of large biomolecules. In recent years, several experimental setups have demonstrated that the use of ESI results in the formation of charged droplets that are aspirated into the vacuum systems of mass spectrometers. This results in a variety of consequences, such as instrument contamination, which can impede the analytical performance. We investigate the signatures of aspirated charged droplets with a commercial LC-ESI-MS system at analytical conditions. Previous observations without LC coupling are reproduced and show that significant droplet aspiration is probably taking place at analytical LC-ESI-MS conditions. This common phenomenon likely decreases the instrument sensitivity. Analyte can be released by isolation and fragmentation of droplet fragments; thus, aspirated droplets can mask analyte even in the mass analyzer region. The complex morphology of droplet MS/MS mass spectra is highly reproducible at the same experimental conditions. This implies the existence of distinct molecular reaction pathways of the droplet fragments. To assess the effect of droplet aspiration on analytical applications, relevant method and ion source parameters, which are commonly varied during method optimization, were investigated. Further variations of the solvent composition revealed that the aspirated droplets and their fragmentation are particularly sensitive to the solvent composition and thus also to the LC solvent gradient in an analytical experiment.</p>","PeriodicalId":672,"journal":{"name":"Journal of the American Society for Mass Spectrometry","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142407987","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhanced Sample Multiplexing-Based Targeted Proteomics with Intelligent Data Acquisition 基于样品复用的靶向蛋白质组学增强型智能数据采集
IF 3.1 2区 化学
Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-10 DOI: 10.1021/jasms.4c0023410.1021/jasms.4c00234
Ka Yang, Joao A. Paulo, Steven P. Gygi and Qing Yu*, 
{"title":"Enhanced Sample Multiplexing-Based Targeted Proteomics with Intelligent Data Acquisition","authors":"Ka Yang,&nbsp;Joao A. Paulo,&nbsp;Steven P. Gygi and Qing Yu*,&nbsp;","doi":"10.1021/jasms.4c0023410.1021/jasms.4c00234","DOIUrl":"https://doi.org/10.1021/jasms.4c00234https://doi.org/10.1021/jasms.4c00234","url":null,"abstract":"<p >Targeted proteomics has been playing an increasingly important role in hypothesis-driven protein research and clinical biomarker discovery. We previously created a workflow, Tomahto, to enable real-time targeted pathway proteomics assays using two-dimensional multiplexing technology. Coupled with the TMT 11-plex reagent, hundreds of proteins of interest from up to 11 samples can be targeted and accurately quantified in a single-shot experiment with remarkable sensitivity. However, room remains to further improve the sensitivity, accuracy, and throughput, especially for targeted studies demanding a high peptide-level success rate. Here, bearing in mind the goal to improve peptide-level targeting, we introduce several new functionalities in Tomahto, featuring the integration of gas-phase fractionation using the FAIMS device, an accompanying software program (TomahtoPrimer) to customize fragmentation for each peptide target, and support for higher multiplexing capacity with the latest TMTpro reagent. We demonstrate that adding these features to the Tomahto platform significantly improves overall success rate from 89% to 98% in a single 60 min targeted assay of 290 peptides across human cell lines, while boosting quantitative accuracy via reducing TMT reporter ion interference.</p>","PeriodicalId":672,"journal":{"name":"Journal of the American Society for Mass Spectrometry","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142407985","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Writing with Mass-Selected Ions Using a Dynamic Field Wien Filter 使用动态场维恩滤波器写入质量选择离子
IF 3.2 2区 化学
Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-10 DOI: 10.1021/jasms.4c00274
Michael F. Espenship, Julia Laskin
{"title":"Writing with Mass-Selected Ions Using a Dynamic Field Wien Filter","authors":"Michael F. Espenship, Julia Laskin","doi":"10.1021/jasms.4c00274","DOIUrl":"https://doi.org/10.1021/jasms.4c00274","url":null,"abstract":"We have designed and constructed a low-cost Wien filter based on strong permanent magnets and integrated it into an ion soft-landing instrument to enable parallel deposition as well as one- and two-dimensional surface patterning of mass-selected ions using dynamic fields. We show the capabilities of this device for separating ions from a multicomponent high-flux continuous ion beam and simultaneous deposition of ions of different mass-to-charge ratios onto discrete locations on a surface. When a dynamic electric field is applied parallel to the magnetic field, ions are deposited in one-dimensional arrays, laterally separated by mass. The field’s strength, frequency, and waveform type determine both the lengths of the arrays and the density of ions across the 1-D pattern. Additionally, a second dynamic field from user-defined waveforms orthogonal to the magnetic field enables two-dimensional surface patterning of ions while maintaining mass separation. These experiments demonstrate the practical utility of a Wien filter for the controlled fabrication of interfaces with arbitrary patterns of mass-selected ions.","PeriodicalId":672,"journal":{"name":"Journal of the American Society for Mass Spectrometry","volume":null,"pages":null},"PeriodicalIF":3.2,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142221989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Predicting Peptide Ionization Efficiencies for Electrospray Ionization Mass Spectrometry Using Machine Learning 利用机器学习预测电喷雾离子化质谱仪的肽离子化效率
IF 3.2 2区 化学
Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-09 DOI: 10.1021/jasms.4c00137
Justin A. Kaskow, Eric T. Hahnert, Thomas K. Porter, Yali Lu, Valentin Stanev, Chendi Niu, Wei Xu, Methal Albarghouthi, Chunlei Wang
{"title":"Predicting Peptide Ionization Efficiencies for Electrospray Ionization Mass Spectrometry Using Machine Learning","authors":"Justin A. Kaskow, Eric T. Hahnert, Thomas K. Porter, Yali Lu, Valentin Stanev, Chendi Niu, Wei Xu, Methal Albarghouthi, Chunlei Wang","doi":"10.1021/jasms.4c00137","DOIUrl":"https://doi.org/10.1021/jasms.4c00137","url":null,"abstract":"Mass spectrometry (MS) is inherently an information-rich technique. In this era of big data, label-free MS quantification for nontargeted studies has gained increasing popularity, especially for complex systems. One of the cornerstones of successful label-free quantification is the predictive modeling of ionization efficiency (IE) based on solutes’ physicochemical properties. While many have studied IE modeling for small molecules, there are limited reports on peptide IEs. In this study, we leverage the stoichiometric relationship in trypsin digests of well-characterized monoclonal antibodies (mAbs) to compile a data set of relative ionization efficiencies (RIEs) for 241 peptides. From each peptide’s sequence, we computed a set of physiochemical descriptors, which were then used to train machine learning regression models to predict RIEs. Peptides shorter than 20 amino acids had RIEs that were highly correlated to their molecular weight. A random forest (RF) model was able to best predict the RIEs of a test data set with a mean relative error of 23.9%. For larger peptides, a multilayer perceptron (MLP) model improved RIE prediction compared to current best practices, reducing mean relative error from 60.5% to 32.0%. Finally, we also show the application of the RF model in label-free relative protein quantification and improving the quantification of peptide post-translational modifications (PTMs). This approach to predicting peptide IEs from their sequences enables the development of accurate label-free quantification workflows for peptide and protein analysis.","PeriodicalId":672,"journal":{"name":"Journal of the American Society for Mass Spectrometry","volume":null,"pages":null},"PeriodicalIF":3.2,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142221994","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development and Validation of Methodologies for the Identification of Specialized Pro-Resolving Lipid Mediators and Classic Eicosanoids in Biological Matrices 生物基质中特殊促溶解脂质介质和经典二十酸的鉴定方法的开发与验证
IF 3.2 2区 化学
Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-09 DOI: 10.1021/jasms.4c00211
Matthew Dooley, Amitis Saliani, Jesmond Dalli
{"title":"Development and Validation of Methodologies for the Identification of Specialized Pro-Resolving Lipid Mediators and Classic Eicosanoids in Biological Matrices","authors":"Matthew Dooley, Amitis Saliani, Jesmond Dalli","doi":"10.1021/jasms.4c00211","DOIUrl":"https://doi.org/10.1021/jasms.4c00211","url":null,"abstract":"Lipid mediators, which include specialized pro-resolving mediators and classic eicosanoids, are pivotal in both initiating and resolving inflammation. The regulation of these molecules determines whether inflammation resolves naturally or persists. However, our understanding of how these mediators are regulated over time in various inflammatory contexts is limited. This gap hinders our grasp of the mechanisms underlying the disease onset and progression. Due to their localized action and low endogenous levels in many tissues, developing robust and highly sensitive methodologies is imperative for assessing their endogenous regulation in diverse inflammatory settings. These methodologies will help us gain insight into their physiological roles. Here, we establish methodologies for extracting, identifying, and quantifying these mediators. Using our methods, we identified a total of 37 lipid mediators. Additionally, by employing a reverse-phase HPLC method, we successfully separated both double-bond and chiral isomers of select lipid mediators, including Lipoxin (LX) A<sub>4</sub>, 15-epi-LXA<sub>4</sub>, Protectin (PD) D1, PDX, and 17R-PD1. Validation of the method was performed in both solvent and surrogate matrix for linearity of the standard curves, lower limits of quantitation (LLOQ), accuracy, and precision. Results from these studies demonstrated that linearity was good with <i>r</i><sup>2</sup> values &gt; 0.98, and LLOQ for the mediators ranged from 0.01 to 0.9 pg in phase and from 0.1 to 8.5 pg in surrogate matrix. The relative standard deviation (RSD) for inter- and intraday precision in solvent ranged from 5% to 12% at low, intermediate, and high concentrations, whereas the RSD for the inter- and intraday variability in the accuracy ranged from 95% to 87% at low to high concentrations. The recovery in biological matrices (plasma and serum) for the internal standards used ranged from 60% to 118%. We observed a marked ion suppression for molecules evaluated in negative ionization mode, while there was an ion enhancement effect by the matrix for molecules evaluated in positive ionization mode. Comparison of the integration algorithms, namely, AutoPeak and MQ4, and approaches for calculating signal-to-noise ratios (i.e., US Pharmacopeia, relative noise, peak to peak, and standard deviation) demonstrated that different integration algorithms tested had little influence on signal-to-noise ratio calculations. In contrast, the method used to calculate the signal-to-noise ratio had a more significant effect on the results, with the relative noise approach proving to be the most robust. The methods described herein provide a platform to study the SPM and classic eicosanoids in biological tissues that will help further our understanding of disease mechanisms.","PeriodicalId":672,"journal":{"name":"Journal of the American Society for Mass Spectrometry","volume":null,"pages":null},"PeriodicalIF":3.2,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142221993","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development and Validation of Methodologies for the Identification of Specialized Pro-Resolving Lipid Mediators and Classic Eicosanoids in Biological Matrices 生物基质中特殊促溶解脂质介质和经典二十酸的鉴定方法的开发与验证
IF 3.1 2区 化学
Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-09 DOI: 10.1021/jasms.4c0021110.1021/jasms.4c00211
Matthew Dooley, Amitis Saliani and Jesmond Dalli*, 
{"title":"Development and Validation of Methodologies for the Identification of Specialized Pro-Resolving Lipid Mediators and Classic Eicosanoids in Biological Matrices","authors":"Matthew Dooley,&nbsp;Amitis Saliani and Jesmond Dalli*,&nbsp;","doi":"10.1021/jasms.4c0021110.1021/jasms.4c00211","DOIUrl":"https://doi.org/10.1021/jasms.4c00211https://doi.org/10.1021/jasms.4c00211","url":null,"abstract":"<p >Lipid mediators, which include specialized pro-resolving mediators and classic eicosanoids, are pivotal in both initiating and resolving inflammation. The regulation of these molecules determines whether inflammation resolves naturally or persists. However, our understanding of how these mediators are regulated over time in various inflammatory contexts is limited. This gap hinders our grasp of the mechanisms underlying the disease onset and progression. Due to their localized action and low endogenous levels in many tissues, developing robust and highly sensitive methodologies is imperative for assessing their endogenous regulation in diverse inflammatory settings. These methodologies will help us gain insight into their physiological roles. Here, we establish methodologies for extracting, identifying, and quantifying these mediators. Using our methods, we identified a total of 37 lipid mediators. Additionally, by employing a reverse-phase HPLC method, we successfully separated both double-bond and chiral isomers of select lipid mediators, including Lipoxin (LX) A<sub>4</sub>, 15-epi-LXA<sub>4</sub>, Protectin (PD) D1, PDX, and 17R-PD1. Validation of the method was performed in both solvent and surrogate matrix for linearity of the standard curves, lower limits of quantitation (LLOQ), accuracy, and precision. Results from these studies demonstrated that linearity was good with <i>r</i><sup>2</sup> values &gt; 0.98, and LLOQ for the mediators ranged from 0.01 to 0.9 pg in phase and from 0.1 to 8.5 pg in surrogate matrix. The relative standard deviation (RSD) for inter- and intraday precision in solvent ranged from 5% to 12% at low, intermediate, and high concentrations, whereas the RSD for the inter- and intraday variability in the accuracy ranged from 95% to 87% at low to high concentrations. The recovery in biological matrices (plasma and serum) for the internal standards used ranged from 60% to 118%. We observed a marked ion suppression for molecules evaluated in negative ionization mode, while there was an ion enhancement effect by the matrix for molecules evaluated in positive ionization mode. Comparison of the integration algorithms, namely, AutoPeak and MQ4, and approaches for calculating signal-to-noise ratios (i.e., US Pharmacopeia, relative noise, peak to peak, and standard deviation) demonstrated that different integration algorithms tested had little influence on signal-to-noise ratio calculations. In contrast, the method used to calculate the signal-to-noise ratio had a more significant effect on the results, with the relative noise approach proving to be the most robust. The methods described herein provide a platform to study the SPM and classic eicosanoids in biological tissues that will help further our understanding of disease mechanisms.</p>","PeriodicalId":672,"journal":{"name":"Journal of the American Society for Mass Spectrometry","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/jasms.4c00211","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142404115","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Predicting Peptide Ionization Efficiencies for Electrospray Ionization Mass Spectrometry Using Machine Learning 利用机器学习预测电喷雾离子化质谱仪的肽离子化效率
IF 3.1 2区 化学
Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-09 DOI: 10.1021/jasms.4c0013710.1021/jasms.4c00137
Justin A. Kaskow, Eric T. Hahnert, Thomas K. Porter, Yali Lu*, Valentin Stanev*, Chendi Niu, Wei Xu, Methal Albarghouthi and Chunlei Wang, 
{"title":"Predicting Peptide Ionization Efficiencies for Electrospray Ionization Mass Spectrometry Using Machine Learning","authors":"Justin A. Kaskow,&nbsp;Eric T. Hahnert,&nbsp;Thomas K. Porter,&nbsp;Yali Lu*,&nbsp;Valentin Stanev*,&nbsp;Chendi Niu,&nbsp;Wei Xu,&nbsp;Methal Albarghouthi and Chunlei Wang,&nbsp;","doi":"10.1021/jasms.4c0013710.1021/jasms.4c00137","DOIUrl":"https://doi.org/10.1021/jasms.4c00137https://doi.org/10.1021/jasms.4c00137","url":null,"abstract":"<p >Mass spectrometry (MS) is inherently an information-rich technique. In this era of big data, label-free MS quantification for nontargeted studies has gained increasing popularity, especially for complex systems. One of the cornerstones of successful label-free quantification is the predictive modeling of ionization efficiency (IE) based on solutes’ physicochemical properties. While many have studied IE modeling for small molecules, there are limited reports on peptide IEs. In this study, we leverage the stoichiometric relationship in trypsin digests of well-characterized monoclonal antibodies (mAbs) to compile a data set of relative ionization efficiencies (RIEs) for 241 peptides. From each peptide’s sequence, we computed a set of physiochemical descriptors, which were then used to train machine learning regression models to predict RIEs. Peptides shorter than 20 amino acids had RIEs that were highly correlated to their molecular weight. A random forest (RF) model was able to best predict the RIEs of a test data set with a mean relative error of 23.9%. For larger peptides, a multilayer perceptron (MLP) model improved RIE prediction compared to current best practices, reducing mean relative error from 60.5% to 32.0%. Finally, we also show the application of the RF model in label-free relative protein quantification and improving the quantification of peptide post-translational modifications (PTMs). This approach to predicting peptide IEs from their sequences enables the development of accurate label-free quantification workflows for peptide and protein analysis.</p>","PeriodicalId":672,"journal":{"name":"Journal of the American Society for Mass Spectrometry","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142404114","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Time-Resolved Ion Mobility-Mass Spectrometry Reveals Structural Transitions in the Disassembly of Modular Polyketide Syntheses. 时间分辨离子迁移质谱法揭示模块化多酮合成分解过程中的结构转变
IF 3.1 2区 化学
Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-04 Epub Date: 2024-07-22 DOI: 10.1021/jasms.4c00181
Chunyi Zhao, Samuel T Slocum, David H Sherman, Brandon T Ruotolo
{"title":"Time-Resolved Ion Mobility-Mass Spectrometry Reveals Structural Transitions in the Disassembly of Modular Polyketide Syntheses.","authors":"Chunyi Zhao, Samuel T Slocum, David H Sherman, Brandon T Ruotolo","doi":"10.1021/jasms.4c00181","DOIUrl":"10.1021/jasms.4c00181","url":null,"abstract":"<p><p>The type 1 polyketide synthase (PKS) assembly line uses its modular structure to produce polyketide natural products that form the basis of many pharmaceuticals. Currently, several cryoelectron microscopy (cryo-EM) structures of a multidomain PKS module have been constructed, but much remains to be learned. Here we utilize ion-mobility mass spectrometry (IM-MS) to record size and shape information and detect different conformational states of a 207 kDa didomain dimer comprised of ketosynthase (KS) and acyl transferase (AT), excised from full-length module. Furthermore, gas-phase stability differences between these different conformations are captured by collision induced unfolding (CIU) technology. Additionally, through tracking these forms as a function of time, we elucidate a detailed disassembly pathway for KS-AT dimers for the first time.</p>","PeriodicalId":672,"journal":{"name":"Journal of the American Society for Mass Spectrometry","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141747116","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization and Quantification of Naphthenic Acids in Produced Water by Orbitrap MS and a Multivariate Approach. 利用 Orbitrap MS 和多元方法表征和定量采出水中的环烷酸。
IF 3.1 2区 化学
Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-04 Epub Date: 2024-08-24 DOI: 10.1021/jasms.4c00172
Jussara Valente Roque, Marcella Ferreira Rodrigues, Gabriel Henry M Dufrayer, Iris Medeiros Júnior, Rogério Mesquita de Carvalho, Gesiane da Silva Lima, Gabriel Franco Dos Santos, Boniek Gontijo Vaz
{"title":"Characterization and Quantification of Naphthenic Acids in Produced Water by Orbitrap MS and a Multivariate Approach.","authors":"Jussara Valente Roque, Marcella Ferreira Rodrigues, Gabriel Henry M Dufrayer, Iris Medeiros Júnior, Rogério Mesquita de Carvalho, Gesiane da Silva Lima, Gabriel Franco Dos Santos, Boniek Gontijo Vaz","doi":"10.1021/jasms.4c00172","DOIUrl":"10.1021/jasms.4c00172","url":null,"abstract":"<p><p>Naphthenic acids (NAs) naturally occur in crude oil and its associated produced water, presenting significant challenges, such as corrosion, in refinery apparatus and ecotoxicity in aquatic habitats. This study delineates a multivariate method to quantify NAs in produced water via electrospray ionization coupled with high-resolution Orbitrap mass spectrometry (ESI-Orbitrap MS). By employing liquid-liquid extraction, followed by direct infusion ESI(-)-Orbitrap MS, we characterized and quantified NAs employing a partial least-squares regression (PLS) model enhanced by the ordered predictor selection (OPS) algorithm. Thirty-six produced water samples were utilized, with 24 allocated for calibration and 12 designated for validation. The PLS-OPS model demonstrated notable accuracy in predicting NA concentrations in simulated and actual produced water samples ranging from ∼30 to 300 mg·L<sup>-1</sup>. This methodology offers a rapid yet robust alternative for quantifying NAs using mass spectrometry augmented by PLS and the OPS. Its significance is underscored by its potential to equip the petroleum industry with a swift and reliable monitoring mechanism for NAs in produced water, thereby aiding in mitigating environmental and operational risks.</p>","PeriodicalId":672,"journal":{"name":"Journal of the American Society for Mass Spectrometry","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11378276/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142046145","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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