Paleobiology最新文献_第8页

Developmental plasticity in deep time: a window to population ecological inference 长时间的发育可塑性:种群生态推断的窗口

IF 2.7 2区地球科学

Paleobiology Pub Date : 2022-08-04 DOI: 10.1017/pab.2022.26

A. Brombacher, D. Schmidt, T. H. Ezard

{"title":"Developmental plasticity in deep time: a window to population ecological inference","authors":"A. Brombacher, D. Schmidt, T. H. Ezard","doi":"10.1017/pab.2022.26","DOIUrl":"https://doi.org/10.1017/pab.2022.26","url":null,"abstract":"Abstract. Developmental plasticity, where traits change state in response to environmental cues, is well studied in modern populations. It is also suspected to play a role in macroevolutionary dynamics, but due to a lack of long-term records, the frequency of plasticity-led evolution in deep time remains unknown. Populations are dynamic entities, yet their representation in the fossil record is a static snapshot of often isolated individuals. Here, we apply for the first time contemporary integral projection models (IPMs) to fossil data to link individual development with expected population variation. IPMs describe the effects of individual growth in discrete steps on long-term population dynamics. We parameterize the models using modern and fossil data of the planktonic foraminifer Trilobatus sacculifer. Foraminifera grow by adding chambers in discrete stages and die at reproduction, making them excellent case studies for IPMs. Our results predict that somatic growth rates have almost twice as much influence on population dynamics than survival and more than eight times more influence than reproduction, suggesting that selection would primarily target somatic growth as the major determinant of fitness. As numerous paleobiological systems record growth rate increments in single genetic individuals and imaging technologies are increasingly available, our results open up the possibility of evidence-based inference of developmental plasticity spanning macroevolutionary dynamics. Given the centrality of ecology in paleobiological thinking, our model is one approach to help bridge eco-evolutionary scales while directing attention toward the most relevant life-history traits to measure.","PeriodicalId":54646,"journal":{"name":"Paleobiology","volume":"49 1","pages":"259 - 270"},"PeriodicalIF":2.7,"publicationDate":"2022-08-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44908165","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 2

PAB volume 48 issue 3 Cover and Front matter PAB第48卷第3期封面和封面

IF 2.7 2区地球科学

Paleobiology Pub Date : 2022-08-01 DOI: 10.1017/pab.2022.29

引用次数: 0

Dispersals from the West Tethys as the source of the Indo-West Pacific diversity hotspot in comatulid crinoids 西特提斯的分散作为印度-西太平洋多样性的来源，在共生海百合的热点

IF 2.7 2区地球科学

Paleobiology Pub Date : 2022-08-01 DOI: 10.1017/pab.2022.23

James G. Saulsbury, T. Baumiller

{"title":"Dispersals from the West Tethys as the source of the Indo-West Pacific diversity hotspot in comatulid crinoids","authors":"James G. Saulsbury, T. Baumiller","doi":"10.1017/pab.2022.23","DOIUrl":"https://doi.org/10.1017/pab.2022.23","url":null,"abstract":"Abstract. Conspicuous centers of biodiversity are frequently attributed to local conditions that promote speciation or resistance to extinction, but recent diversification studies indicate this mode of explanation might not be very general, so it may be fruitful to revisit the role of dispersal in concentrating biodiversity. Here we consider the processes underlying the marine diversity hotspot in the Indo-West Pacific among comatulid crinoids, suspension-feeding echinoderms conspicuous on modern tropical reefs. We used ancestral-range reconstruction on a phylogeny of extant crinoids, assembled a new occurrence database of fossil comatulids and interrogated it with probabilistic preservational models, and developed a morphological character matrix to estimate the relationships among living and fossil comatulids. Ancestral-range reconstruction on a phylogeny of extant comatulids recovers an origin outside the Indo-Pacific and elevated dispersal into it. A new occurrence database records the comatulid clade spreading out gradually from origin in the Early Jurassic of the West Tethys. Comatulids do not appear in their modern hotspot until the Oligocene, and taphonomic analyses show these results cannot be explained solely as a result of inadequate sampling in Asia and Oceania. Finally, phylogenetic analyses demonstrate that deeply nested crown-group comatulids had originated before the clade became well established in the East Tethys, implying many independent dispersals into the modern hotspot. These consilient results suggest a biodiversity hotspot that owes its existence to dispersals out of the ancient West Tethys rather than to elevated in situ diversification.","PeriodicalId":54646,"journal":{"name":"Paleobiology","volume":"49 1","pages":"39 - 52"},"PeriodicalIF":2.7,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47540976","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 1

Reassessing growth and mortality estimates for the Ordovician trilobite Triarthrus eatoni 奥陶系三叶虫Triarthrus etoni的生长和死亡率估算

IF 2.7 2区地球科学

Paleobiology Pub Date : 2022-07-25 DOI: 10.1017/pab.2022.22

D. Pauly, J. D. Holmes

{"title":"Reassessing growth and mortality estimates for the Ordovician trilobite Triarthrus eatoni","authors":"D. Pauly, J. D. Holmes","doi":"10.1017/pab.2022.22","DOIUrl":"https://doi.org/10.1017/pab.2022.22","url":null,"abstract":"Abstract. A length–frequency sample (n = 295) from a fossil population of the Ordovician trilobite Triarthrus eatoni Hall, 1838, assembled and analyzed by J. L. Cisne in 1973 is here reexamined using methods of length–frequency analysis commonly used in fishery science and marine biology. Theoretical considerations and the empirical data at hand suggest that the growth of T. eatoni was not “linear,” but asymptotic, as is the growth of most Recent marine invertebrates. The parameters of the von Bertalanffy growth function (L ∞ = 41 mm, K = 0.29 yr–1) suggest that T. eatoni, which apparently lived in a challenging environment, grew somewhat more slowly than the extant marine isopod Ceratoserolis trilobitoides (Eights, 1833), used here as Recent analogue to T. eatoni. This trilobite probably lived up to 10 years, rather than the suggested 4 years, and its mortality rate was 15%–20% per year rather than 30%–40% per year. These represent the first estimates of trilobite absolute growth characteristics using methods known to accurately model growth in extant water-breathing ectotherms. These provide a baseline for trilobite growth that can be used to make inferences about growth in other species. The approach used here may also be applied to other trilobites for which suitable length–frequency data exist.","PeriodicalId":54646,"journal":{"name":"Paleobiology","volume":"49 1","pages":"120 - 130"},"PeriodicalIF":2.7,"publicationDate":"2022-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43890010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 3

Interpretation of fossil embryos requires reasonable assessment of developmental age 对胚胎化石的解释需要对发育年龄进行合理的评估

IF 2.7 2区地球科学

Paleobiology Pub Date : 2022-07-20 DOI: 10.1017/pab.2022.21

D. Deeming, M. Kundrát

{"title":"Interpretation of fossil embryos requires reasonable assessment of developmental age","authors":"D. Deeming, M. Kundrát","doi":"10.1017/pab.2022.21","DOIUrl":"https://doi.org/10.1017/pab.2022.21","url":null,"abstract":"Abstract. Dinosaur embryos cause a lot of excitement in the scientific literature and are often widely reported because of the general public's interest in dinosaur biology. Well-preserved, articulated oviraptorosaur embryos in eggs are usually interpreted as representing a stage of development close to hatching because of their large size and good level of skeletal ossification. Based on this evidence, a recent report suggested that the position of the one embryo's head was reminiscent of an avian-like hatching position. Here we explore how the developmental stage of well-preserved oviraptorosaur embryos can be estimated, rather than assumed. This will help in our understanding of their developmental biology and its evolutionary consequences. Using quantitative methods and comparison with modern crocodilian embryos, we show that all articulated oviraptorosaur embryos are small relative to the egg and most likely at a stage of development equivalent to around 50%–60% of the developmental period, that is, not even close to hatching. This conclusion is supported by the fact that many elements of the crocodilian skeleton are well ossified many weeks before hatching and the position of oviraptorosaur embryos' heads was also comparable to a crocodilian embryo many days before hatching. Misunderstandings about the stage of the developmental biology of these well-preserved oviraptorosaur embryos hampers our understanding of the true nature of their reproductive biology. We urge a more conservative approach to their interpretation. This is important, because misunderstandings in the minds of the public about dinosaur biology are hard to counter once poorly evidenced ideas have been reported around the world.","PeriodicalId":54646,"journal":{"name":"Paleobiology","volume":"49 1","pages":"68 - 76"},"PeriodicalIF":2.7,"publicationDate":"2022-07-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44952422","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Automatic taxonomic identification based on the Fossil Image Dataset (>415,000 images) and deep convolutional neural networks 基于化石图像数据集（>415000幅图像）和深度卷积神经网络的自动分类识别

IF 2.7 2区地球科学

Paleobiology Pub Date : 2022-06-17 DOI: 10.1017/pab.2022.14

Xiaokang Liu, Shouyi Jiang, Ruiwei Wu, Wenchao Shu, Jie Hou, Y. Sun, Jiarui Sun, Daoliang Chu, Yuyang Wu, Haijun Song

{"title":"Automatic taxonomic identification based on the Fossil Image Dataset (>415,000 images) and deep convolutional neural networks","authors":"Xiaokang Liu, Shouyi Jiang, Ruiwei Wu, Wenchao Shu, Jie Hou, Y. Sun, Jiarui Sun, Daoliang Chu, Yuyang Wu, Haijun Song","doi":"10.1017/pab.2022.14","DOIUrl":"https://doi.org/10.1017/pab.2022.14","url":null,"abstract":"Abstract. The rapid and accurate taxonomic identification of fossils is of great significance in paleontology, biostratigraphy, and other fields. However, taxonomic identification is often labor-intensive and tedious, and the requisition of extensive prior knowledge about a taxonomic group also requires long-term training. Moreover, identification results are often inconsistent across researchers and communities. Accordingly, in this study, we used deep learning to support taxonomic identification. We used web crawlers to collect the Fossil Image Dataset (FID) via the Internet, obtaining 415,339 images belonging to 50 fossil clades. Then we trained three powerful convolutional neural networks on a high-performance workstation. The Inception-ResNet-v2 architecture achieved an average accuracy of 0.90 in the test dataset when transfer learning was applied. The clades of microfossils and vertebrate fossils exhibited the highest identification accuracies of 0.95 and 0.90, respectively. In contrast, clades of sponges, bryozoans, and trace fossils with various morphologies or with few samples in the dataset exhibited a performance below 0.80. Visual explanation methods further highlighted the discrepancies among different fossil clades and suggested similarities between the identifications made by machine classifiers and taxonomists. Collecting large paleontological datasets from various sources, such as the literature, digitization of dark data, citizen-science data, and public data from the Internet may further enhance deep learning methods and their adoption. Such developments will also possibly lead to image-based systematic taxonomy to be replaced by machine-aided classification in the future. Pioneering studies can include microfossils and some invertebrate fossils. To contribute to this development, we deployed our model on a server for public access at www.ai-fossil.com.","PeriodicalId":54646,"journal":{"name":"Paleobiology","volume":"49 1","pages":"1 - 22"},"PeriodicalIF":2.7,"publicationDate":"2022-06-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45259618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 9

Changing diets over time: knock-on effects of marine megafauna overexploitation on their competitors in the southwestern Atlantic Ocean 随着时间的推移，饮食的变化：西南大西洋海洋巨型动物群过度开发对其竞争对手的连锁反应

IF 2.7 2区地球科学

Paleobiology Pub Date : 2022-06-16 DOI: 10.1017/pab.2022.19

M. Bas, Angélica M. Tivoli, I. B. Godino, M. Salemme, Fernando Santiago, J. Belardi, Florencia Borella, D. Vales, E. Crespo, L. Cardona

{"title":"Changing diets over time: knock-on effects of marine megafauna overexploitation on their competitors in the southwestern Atlantic Ocean","authors":"M. Bas, Angélica M. Tivoli, I. B. Godino, M. Salemme, Fernando Santiago, J. Belardi, Florencia Borella, D. Vales, E. Crespo, L. Cardona","doi":"10.1017/pab.2022.19","DOIUrl":"https://doi.org/10.1017/pab.2022.19","url":null,"abstract":"Abstract. This study compares the δ15N values and the trophic position of two seabird species throughout the late Holocene in three regions in the southwestern Atlantic Ocean to assess the hypothesis that the decimation of megafauna led to changes in the trophic position of mesopredators. Modern and ancient mollusk shells were also analyzed to account for changes in the isotopic baseline through time. Results revealed that modern Magellanic penguins have higher δ15N values than their ancient conspecifics in the three regions, after controlling for changes in the isotopic baseline. This was also true for modern Imperial shags compared with ancient unidentified cormorants/shags from the two areas where ancient specimens were recovered (southern Patagonia and the Beagle Channel). Such temporal variability might be caused by three non–mutually exclusive processes: decreased availability of pelagic squat lobster resulting from decreasing primary productivity through the late Holocene, increased availability of small fishes resulting from the sequential depletion of other piscivores (South American fur seal and sea lion and Argentine hake) since the late eighteenth century, and modification of the migratory patterns of Magellanic penguins. Although disentangling the relative contribution of all those processes is impossible at this time, the results reported here demonstrate that the ecology of Magellanic penguins and Imperial shags has undergone major changes since the late Holocene.","PeriodicalId":54646,"journal":{"name":"Paleobiology","volume":"49 1","pages":"176 - 190"},"PeriodicalIF":2.7,"publicationDate":"2022-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49618845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Geographic and temporal morphological stasis in the latest Cretaceous ammonoid Discoscaphites iris from the U.S. Gulf and Atlantic Coastal Plains 美国墨西哥湾和大西洋沿岸平原最新白垩纪菊形蝶翅化石的地理和时间形态停滞

IF 2.7 2区地球科学

Paleobiology Pub Date : 2022-06-16 DOI: 10.1017/pab.2022.15

J. Witts, C. Myers, M. Garb, Kayla M. Irizarry, E. Larina, A. Rashkova, N. Landman

{"title":"Geographic and temporal morphological stasis in the latest Cretaceous ammonoid Discoscaphites iris from the U.S. Gulf and Atlantic Coastal Plains","authors":"J. Witts, C. Myers, M. Garb, Kayla M. Irizarry, E. Larina, A. Rashkova, N. Landman","doi":"10.1017/pab.2022.15","DOIUrl":"https://doi.org/10.1017/pab.2022.15","url":null,"abstract":"Abstract. We examine temporal and spatial variation in morphology of the ammonoid cephalopod Discoscaphites iris using a large dataset from multiple localities in the Late Cretaceous (Maastrichtian) of the U.S. Gulf and Atlantic Coastal Plains, spanning a distance of 2000 km along the paleoshoreline. Our results suggest that the fossil record of D. iris is consistent with no within-species net accumulation of phyletic evolutionary change across morphological traits or the lifetime of this species. Correlations between some traits and paleoenvironmental conditions as well as changes in the coefficient of variation may support limited population-scale ecophenotypic plasticity; however, where stratigraphic data are available, no directional changes in morphology occur before the Cretaceous/Paleogene (K/Pg) boundary. This is consistent with models of “dynamic” evolutionary stasis. Combined with knowledge of life-history traits and paleoecology of scaphitid ammonoids, specifically a short planktonic phase after hatching followed by transition to a nektobenthic adult stage, these data suggest that scaphitids had significant potential for rapid morphological change in conjunction with limited dispersal capacity. It is therefore likely that evolutionary mode in the Scaphitidae (and potentially across the broader ammonoid clade) follows a model of cladogenesis wherein a dynamic morphological stasis is periodically interrupted by more substantial evolutionary change at speciation events. Finally, the lack of temporal changes in our data suggest that global environmental changes had a limited effect on the morphology of ammonoid faunas during the latest Cretaceous.","PeriodicalId":54646,"journal":{"name":"Paleobiology","volume":"49 1","pages":"153 - 175"},"PeriodicalIF":2.7,"publicationDate":"2022-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49086173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 2

The effect of siliceous sponge deposition on Permian paleocommunity structure 硅质海绵沉积对二叠纪古群落结构的影响

IF 2.7 2区地球科学

Paleobiology Pub Date : 2022-06-16 DOI: 10.1017/pab.2022.18

Zackery P. Wistort, K. Ritterbush

{"title":"The effect of siliceous sponge deposition on Permian paleocommunity structure","authors":"Zackery P. Wistort, K. Ritterbush","doi":"10.1017/pab.2022.18","DOIUrl":"https://doi.org/10.1017/pab.2022.18","url":null,"abstract":"Abstract. A dramatic shift from carbonate-rich to chert-rich marine strata occurred during the Permian and is frequently attributed to the increased activity of siliceous sponges and their biosiliceous sedimentation. The first-order ecologic consequences of this transition, if any, remain opaque. We analyze fossil occurrence data from the Phosphoria Basin (western North America) to test whether the presence of siliceous sponges, which are correlated with basin-wide chert strata, influenced the recruitment of benthic fauna. Using published lithologic descriptions, we categorized fossil collections by formation, facies, and lithology and used these data to code detrended correspondence analysis and nonmetric multidimensional scaling ordinations. We also analyzed the clustering of taxa into faunal units termed biofacies. Results from these analyses indicate that fossil collections occurring in chert and carbonate are closely associated in faunal composition and community structure. These collections preferentially occur in the inner- to mid-ramp facies, in agreement with previous studies. Although largely similar in composition, collections of chert and carbonate lithology exhibit differences in the frequency and abundance of accessory brachiopod taxa (e.g., Composita and Hustedia), possibly a result of greater biosiliceous sedimentary input.","PeriodicalId":54646,"journal":{"name":"Paleobiology","volume":"49 1","pages":"99 - 119"},"PeriodicalIF":2.7,"publicationDate":"2022-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46375243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 2

A new approach for investigating spatial relationships of ichnofossils: a case study of Ediacaran–Cambrian animal traces 研究遗迹化石空间关系的新方法——以埃迪卡拉纪-寒武纪动物遗迹为例

IF 2.7 2区地球科学

Paleobiology Pub Date : 2022-05-19 DOI: 10.1017/pab.2022.16

E. Mitchell, S. Evans, Zhe Chen, S. Xiao

{"title":"A new approach for investigating spatial relationships of ichnofossils: a case study of Ediacaran–Cambrian animal traces","authors":"E. Mitchell, S. Evans, Zhe Chen, S. Xiao","doi":"10.1017/pab.2022.16","DOIUrl":"https://doi.org/10.1017/pab.2022.16","url":null,"abstract":"Abstract. Trace fossils record foraging behaviors, the search for resources in patchy environments, of animals in the rock record. Quantification of the strength, density, and nature of foraging behaviors enables the investigation of how these may have changed through time. Here, we present a novel approach to explore such patterns using spatial point process analyses to quantify the scale and strength of ichnofossil spatial distributions on horizontal bedding planes. To demonstrate the utility of this approach, we use two samples from the terminal Ediacaran Shibantan Member in South China (between 551 and 543 Ma) and the early Cambrian Nagaur Sandstone in northwestern India (between 539 and 509 Ma). We find that ichnotaxa on both surfaces exhibited significant nonhomogeneous lateral patterns, with distinct levels of heterogeneity exhibited by different types of trace fossils. In the Shibantan, two ichnotaxa show evidence for mutual positive aggregation over a shared resource, suggesting the ability to focus on optimal resource areas. Trace fossils from the Nagaur Sandstone exhibit more sophisticated foraging behavior, with greater niche differentiation. Critically, mark correlation functions highlight significant spatial autocorrelation of trace fossil orientations, demonstrating the greater ability of these Cambrian tracemakers to focus on optimal patches. Despite potential limitations, these analyses hint at changes in the development and optimization of foraging at the Ediacaran/Cambrian transition and highlight the potential of spatial point process analysis to tease apart subtle differences in behavior in the trace fossil record.","PeriodicalId":54646,"journal":{"name":"Paleobiology","volume":"48 1","pages":"557 - 575"},"PeriodicalIF":2.7,"publicationDate":"2022-05-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48079057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 2