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Sustainable and secretory production of saffron pigments in Synechocystis sp. PCC 6803 and E. coli. 胞囊菌pcc6803和大肠杆菌中藏红花色素的可持续分泌性生产。
IF 9.4 1区 生物学
Plant Communications Pub Date : 2025-05-28 DOI: 10.1016/j.xplc.2025.101388
Shanshan Song, Fatimah Aljedaani, Kit Xi Liew, Jianing Mi, Mohamed Salem, Salim Bougouffa, Sebastian Overmans, Kyle J Lauersen, Xiongjie Zheng, Salim Al-Babili
{"title":"Sustainable and secretory production of saffron pigments in Synechocystis sp. PCC 6803 and E. coli.","authors":"Shanshan Song, Fatimah Aljedaani, Kit Xi Liew, Jianing Mi, Mohamed Salem, Salim Bougouffa, Sebastian Overmans, Kyle J Lauersen, Xiongjie Zheng, Salim Al-Babili","doi":"10.1016/j.xplc.2025.101388","DOIUrl":"10.1016/j.xplc.2025.101388","url":null,"abstract":"","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101388"},"PeriodicalIF":9.4,"publicationDate":"2025-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144182629","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Extending Mendel's legacy: Application of hawkweed PpPAR for inducing synthetic apomixis in hybrid rice. 孟德尔遗产的延续:山楂PpPAR在杂交水稻诱导合成无杂交中的应用。
IF 9.4 1区 生物学
Plant Communications Pub Date : 2025-05-27 DOI: 10.1016/j.xplc.2025.101387
Jie Xiong, Yajie Ji, Shenlin Yang, Yong Huang, Xianjin Qiu, Qian Qian, Charles J Underwood, Kejian Wang
{"title":"Extending Mendel's legacy: Application of hawkweed PpPAR for inducing synthetic apomixis in hybrid rice.","authors":"Jie Xiong, Yajie Ji, Shenlin Yang, Yong Huang, Xianjin Qiu, Qian Qian, Charles J Underwood, Kejian Wang","doi":"10.1016/j.xplc.2025.101387","DOIUrl":"10.1016/j.xplc.2025.101387","url":null,"abstract":"","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101387"},"PeriodicalIF":9.4,"publicationDate":"2025-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144163494","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SUMOylation of BAK1 regulates its co-receptor function for specifically activating brassinosteroid response. BAK1的SUMOylation调节其共受体功能特异性激活油菜素内酯反应。
IF 9.4 1区 生物学
Plant Communications Pub Date : 2025-05-22 DOI: 10.1016/j.xplc.2025.101384
Simin Xia, Danlu Han, Qiong Mo, Jianbin Lai, Chengwei Yang
{"title":"SUMOylation of BAK1 regulates its co-receptor function for specifically activating brassinosteroid response.","authors":"Simin Xia, Danlu Han, Qiong Mo, Jianbin Lai, Chengwei Yang","doi":"10.1016/j.xplc.2025.101384","DOIUrl":"10.1016/j.xplc.2025.101384","url":null,"abstract":"","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101384"},"PeriodicalIF":9.4,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144136522","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evolution of CYP71D drives the diversification of monoterpene indole alkaloid biosynthesis in Gentianales. 基因CYP71D的进化驱动龙胆属植物单萜吲哚生物碱合成的多样化。
IF 9.4 1区 生物学
Plant Communications Pub Date : 2025-05-19 DOI: 10.1016/j.xplc.2025.101381
Sébastien Besseau, Mickael Durand, Duchesse-Lacours Zamar, Enzo Lezin, Louis-Valentin Méteignier, Caroline Birer Williams, Christelle Dutilleul, Thomas Perrot, Arnaud Lanoue, Audrey Oudin, Nicolas Papon, Georges Massiot, Chao Sun, Benoit St-Pierre, Vincent Courdavault
{"title":"Evolution of CYP71D drives the diversification of monoterpene indole alkaloid biosynthesis in Gentianales.","authors":"Sébastien Besseau, Mickael Durand, Duchesse-Lacours Zamar, Enzo Lezin, Louis-Valentin Méteignier, Caroline Birer Williams, Christelle Dutilleul, Thomas Perrot, Arnaud Lanoue, Audrey Oudin, Nicolas Papon, Georges Massiot, Chao Sun, Benoit St-Pierre, Vincent Courdavault","doi":"10.1016/j.xplc.2025.101381","DOIUrl":"10.1016/j.xplc.2025.101381","url":null,"abstract":"","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101381"},"PeriodicalIF":9.4,"publicationDate":"2025-05-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144103147","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An all-in-one plant virus-based vector toolkit for streamlined gene silencing, overexpression, and genome editing. 一个一体化的植物病毒载体工具包,用于流线型基因沉默、过表达和基因组编辑。
IF 9.4 1区 生物学
Plant Communications Pub Date : 2025-05-19 DOI: 10.1016/j.xplc.2025.101379
Yunfei Hao, Zhangcheng Yuan, Yuanyuan Li, Dongyun Zuo, Hailiang Cheng, Qiaolian Wang, Youping Zhang, Limin Lv, Ji Liu, Guoli Song
{"title":"An all-in-one plant virus-based vector toolkit for streamlined gene silencing, overexpression, and genome editing.","authors":"Yunfei Hao, Zhangcheng Yuan, Yuanyuan Li, Dongyun Zuo, Hailiang Cheng, Qiaolian Wang, Youping Zhang, Limin Lv, Ji Liu, Guoli Song","doi":"10.1016/j.xplc.2025.101379","DOIUrl":"10.1016/j.xplc.2025.101379","url":null,"abstract":"","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101379"},"PeriodicalIF":9.4,"publicationDate":"2025-05-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144112356","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
KPGD: A kiwifruit pangenome database for comprehensive mining of genetic diversity in the genus Actinidia. KPGD:猕猴桃泛基因组数据库,用于猕猴桃属遗传多样性的综合挖掘。
IF 9.4 1区 生物学
Plant Communications Pub Date : 2025-05-13 DOI: 10.1016/j.xplc.2025.101373
Bingjie Li, Xingzhu Li, Yinghe Wang, Xin Liu, Kefeng Li, Renjie Li, Malik Umair Faiz, Umaefulam Tobechukwu Darlington, Zhiyuan Rao, Qi Wu, Yi Yue, Songhu Wang, Zhangjun Fei, Yongsheng Liu, Yi Zheng, Junyang Yue
{"title":"KPGD: A kiwifruit pangenome database for comprehensive mining of genetic diversity in the genus Actinidia.","authors":"Bingjie Li, Xingzhu Li, Yinghe Wang, Xin Liu, Kefeng Li, Renjie Li, Malik Umair Faiz, Umaefulam Tobechukwu Darlington, Zhiyuan Rao, Qi Wu, Yi Yue, Songhu Wang, Zhangjun Fei, Yongsheng Liu, Yi Zheng, Junyang Yue","doi":"10.1016/j.xplc.2025.101373","DOIUrl":"10.1016/j.xplc.2025.101373","url":null,"abstract":"","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101373"},"PeriodicalIF":9.4,"publicationDate":"2025-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144025384","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A long terminal repeat retrotransposon in the OsACS6 promoter enhances the epigenetic regulation of lysophospholipid contents in rice grains. OsACS6启动子中的长末端重复反转录转座子增强了水稻籽粒溶洞磷脂含量的表观遗传调控。
IF 9.4 1区 生物学
Plant Communications Pub Date : 2025-05-13 DOI: 10.1016/j.xplc.2025.101375
Kang Li, Yan Cheng, Jingyao Yu, Lanjun Luo, Ling Liu, Luis Alejandro José Mur, Jie Luo, Chuanying Fang
{"title":"A long terminal repeat retrotransposon in the OsACS6 promoter enhances the epigenetic regulation of lysophospholipid contents in rice grains.","authors":"Kang Li, Yan Cheng, Jingyao Yu, Lanjun Luo, Ling Liu, Luis Alejandro José Mur, Jie Luo, Chuanying Fang","doi":"10.1016/j.xplc.2025.101375","DOIUrl":"10.1016/j.xplc.2025.101375","url":null,"abstract":"","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101375"},"PeriodicalIF":9.4,"publicationDate":"2025-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144081945","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrative transcriptogenomic analyses reveal the regulatory network underlying rice eating and cooking quality and identify a role for alpha-globulin in modulating starch and sucrose metabolism. 综合转录基因组分析揭示了大米食用和烹饪质量的调控网络,并揭示了α -球蛋白在调节淀粉和蔗糖代谢中的作用。
IF 9.4 1区 生物学
Plant Communications Pub Date : 2025-05-12 Epub Date: 2025-02-19 DOI: 10.1016/j.xplc.2025.101287
Bhagwat Nawade, Su-Hyeon Shim, Sang-Ho Chu, Weiguo Zhao, Sang-Kyu Lee, Aueangporn Somsri, Thant Zin Maung, Kwon Kyoo Kang, Jae Yoon Kim, Chang-Yong Lee, Min-Seok Kim, Moo-Yeol Baik, Jong-Seong Jeon, Yong-Jin Park
{"title":"Integrative transcriptogenomic analyses reveal the regulatory network underlying rice eating and cooking quality and identify a role for alpha-globulin in modulating starch and sucrose metabolism.","authors":"Bhagwat Nawade, Su-Hyeon Shim, Sang-Ho Chu, Weiguo Zhao, Sang-Kyu Lee, Aueangporn Somsri, Thant Zin Maung, Kwon Kyoo Kang, Jae Yoon Kim, Chang-Yong Lee, Min-Seok Kim, Moo-Yeol Baik, Jong-Seong Jeon, Yong-Jin Park","doi":"10.1016/j.xplc.2025.101287","DOIUrl":"10.1016/j.xplc.2025.101287","url":null,"abstract":"<p><p>Rice eating and cooking quality (ECQ) is significantly influenced by the physicochemical properties of rice starch. This study integrates whole-genome resequencing, transcriptomic data, and phenotypic analysis to identify the genetic factors that regulate transcript expression levels and contribute to phenotypic variation in rice ECQ traits. A TWAS (transcriptome-wide association study) identified 285 transcripts linked to 6 ECQ traits. Genome-wide mapping of these transcripts revealed 21 747 local eQTLs (expression quantitative trait loci) and 45 158 distal eQTLs. TWAS and eQTL analysis detected several known and novel genes, including starch synthesis-related genes, heat shock proteins, transcription factors, genes related to ATP accumulation, and UDP-glucosyltransferases, showcasing the complex genetic regulation of rice ECQ. WGCNA (weighted gene co-expression network analysis) uncovered key co-expression networks, including a module that links alpha-globulin1 (GLB1) to starch and sucrose metabolism. Genetic diversity analysis of the GLB1 gene across a Korean rice collection identified 26 haplotypes, with indica and aus forming 7 and 3 haplotypes, respectively, which showed significant phenotypic effects on ECQ traits. CRISPR-Cas9-created knockout lines validated these findings, demonstrating that loss of GLB1 function caused significant changes in seed storage proteins, reduced amylose content, altered starch granules, and modified pasting properties without affecting plant phenotypes. By integrating TWAS, eQTL mapping, haplotype analysis, gene expression networks, and CRISPR validation, this study establishes GLB1 as a regulator of ECQ, linking starch biosynthesis and protein accumulation pathways. This transcriptogenomic convergence approach provides novel insights into the genetic regulation of ECQ in rice, demonstrating its effectiveness for characterizing complex traits and enabling precision breeding.</p>","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101287"},"PeriodicalIF":9.4,"publicationDate":"2025-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12143143/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143469880","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
GWAS-based population genetic analysis identifies bZIP29 as a heterotic gene in maize. 基于gwas的群体遗传分析表明,bZIP29是玉米的一个杂种优势基因。
IF 9.4 1区 生物学
Plant Communications Pub Date : 2025-05-12 Epub Date: 2025-02-20 DOI: 10.1016/j.xplc.2025.101289
Jie Zhang, Riliang Gu, Xinxin Miao, Renate H Schmidt, Zhenxiang Xu, Jiawen Lu, Yuting Ma, Tao Yang, Pingxi Wang, Yangyang Liu, Xiaoli Wang, Xuemei Du, Nannan Zheng, Sihan Zhen, Chengyong Liang, Yuxin Xie, Yongrui Wu, Lin Li, Jochen C Reif, Yong Jiang, Jianhua Wang, Junjie Fu, Hongwei Zhang
{"title":"GWAS-based population genetic analysis identifies bZIP29 as a heterotic gene in maize.","authors":"Jie Zhang, Riliang Gu, Xinxin Miao, Renate H Schmidt, Zhenxiang Xu, Jiawen Lu, Yuting Ma, Tao Yang, Pingxi Wang, Yangyang Liu, Xiaoli Wang, Xuemei Du, Nannan Zheng, Sihan Zhen, Chengyong Liang, Yuxin Xie, Yongrui Wu, Lin Li, Jochen C Reif, Yong Jiang, Jianhua Wang, Junjie Fu, Hongwei Zhang","doi":"10.1016/j.xplc.2025.101289","DOIUrl":"10.1016/j.xplc.2025.101289","url":null,"abstract":"<p><p>Understanding the role of heterotic genes in contributing to heterosis is essential for advancing hybrid breeding. We analyzed plant height (PH), ear height (EH), and transcriptomic data from a maize hybrid population. Genome-wide association studies (GWASs) revealed that dominance effects of quantitative trait loci (QTLs) play a significant role in hybrid traits and mid-parent heterosis. By integrating GWAS, expression GWAS (eGWAS), and module eGWAS analysis, we prioritized six candidate heterotic genes underlying six QTLs, including one QTL that spans the bZIP29 gene. In the hybrid population, bZIP29 exhibits additive expression and dominance effects for both hybrid traits and mid-parent heterosis, with its favorable allele correlating positively with PH and EH. bZIP29 demonstrates dominance or over-dominance patterns in hybrids derived from crosses between transgenic and wild-type lines, contingent upon its expression. A tsCUT&Tag assay revealed that bZIP29 protein binds directly to a gene regulated by its associated expression QTL (eQTL) and six genes within expression modules governed by its associated module-eQTLs (meQTLs). Regulatory networks involving bZIP29 are more extensive in hybrid subpopulations than in the parental population. This study offers insights into key heterotic genes and networks that underpin the robust growth of hybrid maize.</p>","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101289"},"PeriodicalIF":9.4,"publicationDate":"2025-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12143148/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143477250","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineering the biosynthetic pathway of bacterial cellulose in rice to improve the performance of straw-derived paper. 改造水稻细菌纤维素的生物合成途径,提高秸秆纸的性能。
IF 9.4 1区 生物学
Plant Communications Pub Date : 2025-05-12 Epub Date: 2025-01-23 DOI: 10.1016/j.xplc.2025.101259
Yong-Sheng Tian, Zhi-Hao Zuo, Yong-Dong Deng, Wen-Hui Zhang, Yu Wang, Hao Zhang, Bo Wang, Jian-Jie Gao, Zhen-Jun Li, Li-Juan Wang, Xiao-Yan Fu, Hong-Juan Han, Jing Xu, Ri-He Peng, Quan-Hong Yao
{"title":"Engineering the biosynthetic pathway of bacterial cellulose in rice to improve the performance of straw-derived paper.","authors":"Yong-Sheng Tian, Zhi-Hao Zuo, Yong-Dong Deng, Wen-Hui Zhang, Yu Wang, Hao Zhang, Bo Wang, Jian-Jie Gao, Zhen-Jun Li, Li-Juan Wang, Xiao-Yan Fu, Hong-Juan Han, Jing Xu, Ri-He Peng, Quan-Hong Yao","doi":"10.1016/j.xplc.2025.101259","DOIUrl":"10.1016/j.xplc.2025.101259","url":null,"abstract":"","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101259"},"PeriodicalIF":9.4,"publicationDate":"2025-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12143130/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143043326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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