Fungal Biology and Biotechnology最新文献

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The mechanisms of hyphal pellet formation mediated by polysaccharides, α-1,3-glucan and galactosaminogalactan, in Aspergillus species. α-1,3-葡聚糖和半乳糖胺半乳聚糖对曲霉菌丝球形成机制的影响。
Fungal Biology and Biotechnology Pub Date : 2020-07-01 eCollection Date: 2020-01-01 DOI: 10.1186/s40694-020-00101-4
Ken Miyazawa, Akira Yoshimi, Keietsu Abe
{"title":"The mechanisms of hyphal pellet formation mediated by polysaccharides, α-1,3-glucan and galactosaminogalactan, in <i>Aspergillus</i> species.","authors":"Ken Miyazawa,&nbsp;Akira Yoshimi,&nbsp;Keietsu Abe","doi":"10.1186/s40694-020-00101-4","DOIUrl":"https://doi.org/10.1186/s40694-020-00101-4","url":null,"abstract":"<p><p>Filamentous fungi are widely used for production of enzymes and chemicals, and are industrially cultivated both in liquid and solid cultures. Submerged culture is often used as liquid culture for filamentous fungi. In submerged culture, filamentous fungi show diverse macromorphology such as hyphal pellets and dispersed hyphae depending on culture conditions and genetic backgrounds of fungal strains. Although the macromorphology greatly affects the productivity of submerged cultures, the specific cellular components needed for hyphal aggregation after conidial germination have not been characterized. Recently we reported that the primary cell wall polysaccharide α-1,3-glucan and the extracellular polysaccharide galactosaminogalactan (GAG) contribute to hyphal aggregation in <i>Aspergillus oryzae</i>, and that a strain deficient in both α-1,3-glucan and GAG shows dispersed hyphae in liquid culture. In this review, we summarize our current understanding of the contribution of chemical properties of α-1,3-glucan and GAG to hyphal aggregation. Various ascomycetes and basidiomycetes have α-1,3-glucan synthase gene(s). In addition, some Pezizomycotina fungi, including species used in the fermentation industry, also have GAG biosynthetic genes. We also review here the known mechanisms of biosynthesis of α-1,3-glucan and GAG. Regulation of the biosynthesis of the two polysaccharides could be a potential way of controlling formation of hyphal pellets.</p>","PeriodicalId":52292,"journal":{"name":"Fungal Biology and Biotechnology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40694-020-00101-4","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38120805","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
Potentials of truffles in nutritional and medicinal applications: a review. 松露在营养和药用方面的潜力综述。
Fungal Biology and Biotechnology Pub Date : 2020-06-17 eCollection Date: 2020-01-01 DOI: 10.1186/s40694-020-00097-x
Heayyean Lee, Kyungmin Nam, Zahra Zahra, Muhammad Qudrat Ullah Farooqi
{"title":"Potentials of truffles in nutritional and medicinal applications: a review.","authors":"Heayyean Lee,&nbsp;Kyungmin Nam,&nbsp;Zahra Zahra,&nbsp;Muhammad Qudrat Ullah Farooqi","doi":"10.1186/s40694-020-00097-x","DOIUrl":"https://doi.org/10.1186/s40694-020-00097-x","url":null,"abstract":"<p><p>Truffles, the symbiotic hypogeous edible fungi, have been worldwide regarded as a great delicacy because of their unique flavor and high nutritional value. By identifying their bioactive components such as phenolics, terpenoids, polysaccharides, anandamide, fatty acids, and ergosterols, researchers have paid attention to their biological activities including antitumor, antioxidant, antibacterial, anti-inflammatory, and hepatoprotective activities. In addition, numerous factors have been investigating that can affect the quality and productivity of truffles to overcome their difficulty in culturing and preserving. To provide the information for their potential applications in medicine as well as in functional food, this review summarizes the relevant literature about the biochemical composition, aromatic and nutritional benefits, and biological properties of truffles. Besides, various factors affecting their productivity and quality as well as the preservation methods are also highlighted.</p>","PeriodicalId":52292,"journal":{"name":"Fungal Biology and Biotechnology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-06-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40694-020-00097-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38070341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 25
Invasive growth of Aspergillus oryzae in rice koji and increase of nuclear number. 米曲霉在麴中的入侵生长和核数量的增加。
Fungal Biology and Biotechnology Pub Date : 2020-06-05 eCollection Date: 2020-01-01 DOI: 10.1186/s40694-020-00099-9
Mizuki Yasui, Ken Oda, Shunsuke Masuo, Shuji Hosoda, Takuya Katayama, Jun-Ichi Maruyama, Naoki Takaya, Norio Takeshita
{"title":"Invasive growth of <i>Aspergillus oryzae</i> in rice <i>koji</i> and increase of nuclear number.","authors":"Mizuki Yasui, Ken Oda, Shunsuke Masuo, Shuji Hosoda, Takuya Katayama, Jun-Ichi Maruyama, Naoki Takaya, Norio Takeshita","doi":"10.1186/s40694-020-00099-9","DOIUrl":"10.1186/s40694-020-00099-9","url":null,"abstract":"<p><strong>Background: </strong>'Rice <i>koji</i>' is a solid culture of <i>Aspergillus oryzae</i> on steamed rice grains. Multiple parallel fermentation, wherein saccharification of rice by <i>A. oryzae</i> and alcohol fermentation by the budding yeast occur simultaneously, leads to the formation of a variety of ingredients of Japanese sake. In sake brewing, the degree of mycelial invasive growth into the steamed rice, called '<i>haze</i>-<i>komi</i>', highly correlates with the digestibility and quality of rice <i>koji</i>, since the hyphae growing into the rice secrete amylases and digest starch.</p><p><strong>Results: </strong>In this study, we investigated mycelial distribution of GFP-tagged <i>A. oryzae</i> in rice <i>koji</i> made with different types of rice, such as sake rice and eating rice, with 50 or 90% polishing rate to remove abundant proteins and lipids near the surface. In addition, we compared transcriptomes of <i>A. oryzae</i> in the different types of rice <i>koji</i>. Finally, we found that <i>A. oryzae</i> increases the nuclear number and hyphal width in the course of 1-3 days cultivation.</p><p><strong>Conclusions: </strong>Our imaging analyses indicate that <i>A. oryzae</i> hyphae grew more deeply into 50% polished rice than 90% polished rice. The increases of nuclear number may be a selectively acquired characteristic for the high secretory capacity during the long history of cultivation of this species.</p>","PeriodicalId":52292,"journal":{"name":"Fungal Biology and Biotechnology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7275602/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38029542","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Functional production of human antibody by the filamentous fungus Aspergillus oryzae. 丝状真菌奥里泽曲霉(Aspergillus oryzae)功能性生产人类抗体。
Fungal Biology and Biotechnology Pub Date : 2020-05-28 eCollection Date: 2020-01-01 DOI: 10.1186/s40694-020-00098-w
Hung Hiep Huynh, Naoki Morita, Toshihiro Sakamoto, Takuya Katayama, Takuya Miyakawa, Masaru Tanokura, Yasunori Chiba, Reiko Shinkura, Jun-Ichi Maruyama
{"title":"Functional production of human antibody by the filamentous fungus <i>Aspergillus oryzae</i>.","authors":"Hung Hiep Huynh, Naoki Morita, Toshihiro Sakamoto, Takuya Katayama, Takuya Miyakawa, Masaru Tanokura, Yasunori Chiba, Reiko Shinkura, Jun-Ichi Maruyama","doi":"10.1186/s40694-020-00098-w","DOIUrl":"10.1186/s40694-020-00098-w","url":null,"abstract":"<p><strong>Background: </strong>Monoclonal antibodies (mAbs) as biopharmaceuticals take a pivotal role in the current therapeutic applications. Generally mammalian cell lines, such as those derived from Chinese hamster ovaries (CHO), are used to produce the recombinant antibody. However, there are still concerns about the high cost and the risk of pathogenic contamination when using mammalian cells. <i>Aspergillus oryzae</i>, a filamentous fungus recognized as a GRAS (Generally Regarded As Safe) organism, has an ability to secrete a large amount of proteins into the culture supernatant, and thus the fungus has been used as one of the cost-effective microbial hosts for heterologous protein production. Pursuing this strategy the human anti-TNFα antibody adalimumab, one of the world's best-selling antibodies for the treatment of immune-mediated inflammatory diseases including rheumatoid arthritis, was chosen to produce the full length of mAbs by <i>A. oryzae</i>. Generally, <i>N</i>-glycosylation of the antibody affects immune effector functions such as antibody-dependent cell-mediated cytotoxicity (ADCC) via binding to the Fc receptor (FcγR) on immune cells. The CRISPR/Cas9 system was used to first delete the <i>Aooch1</i> gene encoding a key enzyme for the hyper-mannosylation process in fungi to investigate the binding ability of antibody with FcγRIIIa.</p><p><strong>Results: </strong>Adalimumab was expressed in <i>A. oryzae</i> by the fusion protein system with α-amylase AmyB. The full-length adalimumab consisting of two heavy and two light chains was successfully produced in the culture supernatants. Among the producing strains, the highest amount of antibody was obtained from the ten-protease deletion strain (39.7 mg/L). Two-step purifications by Protein A and size-exclusion chromatography were applied to obtain the high purity sample for further analysis. The antigen-binding and TNFα neutralizing activities of the adalimumab produced by <i>A. oryzae</i> were comparable with those of a commercial product Humira<sup>®</sup>. No apparent binding with the FcγRIIIa was detected with the recombinant adalimumab even by altering the <i>N</i>-glycan structure using the <i>Aooch1</i> deletion strain, which suggests only a little additional activity of immune effector functions.</p><p><strong>Conclusion: </strong>These results demonstrated an alternative low-cost platform for human antibody production by using <i>A. oryzae</i>, possibly offering a reasonable expenditure for patient's welfare.</p>","PeriodicalId":52292,"journal":{"name":"Fungal Biology and Biotechnology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7257131/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38024038","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transport systems, intracellular traffic of intermediates and secretion of β-lactam antibiotics in fungi. 真菌中转运系统、中间体的细胞内转运和β-内酰胺类抗生素的分泌。
Fungal Biology and Biotechnology Pub Date : 2020-04-25 eCollection Date: 2020-01-01 DOI: 10.1186/s40694-020-00096-y
Juan F Martín
{"title":"Transport systems, intracellular traffic of intermediates and secretion of β-lactam antibiotics in fungi.","authors":"Juan F Martín","doi":"10.1186/s40694-020-00096-y","DOIUrl":"https://doi.org/10.1186/s40694-020-00096-y","url":null,"abstract":"<p><p>Fungal secondary metabolites are synthesized by complex biosynthetic pathways catalized by enzymes located in different subcellular compartments, thus requiring traffic of precursors and intermediates between them. The β-lactam antibiotics penicillin and cephalosporin C serve as an excellent model to understand the molecular mechanisms that control the subcellular localization of secondary metabolites biosynthetic enzymes. Optimal functioning of the β-lactam biosynthetic enzymes relies on a sophisticated temporal and spatial organization of the enzymes, the intermediates and the final products. The first and second enzymes of the penicillin pathway, ACV synthetase and IPN synthase, in <i>Penicillium chrysogenum</i> and <i>Aspergillus nidulans</i> are cytosolic. In contrast, the last two enzymes of the penicillin pathway, phenylacetyl-CoA ligase and isopenicillin N acyltransferase, are located in peroxisomes working as a tandem at their optimal pH that coincides with the peroxisomes pH. Two MFS transporters, PenM and PaaT have been found to be involved in the import of the intermediates isopenicillin N and phenylacetic acid, respectively, into peroxisomes. Similar compartmentalization of intermediates occurs in <i>Acremonium chrysogenum;</i> two enzymes isopenicillin N-CoA ligase and isopenicillin N-CoA epimerase, that catalyse the conversion of isopenicillin N in penicillin N, are located in peroxisomes. Two genes encoding MFS transporters, <i>cefP</i> and <i>cefM,</i> are located in the early cephalosporin gene cluster. These transporters have been localized in peroxisomes by confocal fluorescence microscopy. A third gene of <i>A. chrysogenum</i>, <i>cefT</i>, encodes an MFS protein, located in the cell membrane involved in the secretion of cephalosporin C, although <i>cefT</i>-disrupted mutants are still able to export cephalosporin by redundant transporters. The secretion of penicillin from peroxisomes to the extracellular medium is still unclear. Attempts have been made to identify a gene encoding the penicillin secretion protein among the 48 ABC-transporters of <i>P. chrysogenum</i>. The highly efficient secretion system that exports penicillin against a concentration gradient may involve active penicillin extrusion systems mediated by vesicles that fuse to the cell membrane. However, there is no correlation of pexophagy with penicillin or cephalosporin formation since inactivation of pexophagy leads to increased penicillin or cephalosporin biosynthesis due to preservation of peroxisomes. The penicillin biosynthesis finding shows that in order to increase biosynthesis of novel secondary metabolites it is essential to adequately target enzymes to organelles.</p>","PeriodicalId":52292,"journal":{"name":"Fungal Biology and Biotechnology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-04-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40694-020-00096-y","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37887305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 25
Growing a circular economy with fungal biotechnology: a white paper. 利用真菌生物技术发展循环经济:白皮书。
Fungal Biology and Biotechnology Pub Date : 2020-04-02 eCollection Date: 2020-01-01 DOI: 10.1186/s40694-020-00095-z
Vera Meyer, Evelina Y Basenko, J Philipp Benz, Gerhard H Braus, Mark X Caddick, Michael Csukai, Ronald P de Vries, Drew Endy, Jens C Frisvad, Nina Gunde-Cimerman, Thomas Haarmann, Yitzhak Hadar, Kim Hansen, Robert I Johnson, Nancy P Keller, Nada Kraševec, Uffe H Mortensen, Rolando Perez, Arthur F J Ram, Eric Record, Phil Ross, Volha Shapaval, Charlotte Steiniger, Hans van den Brink, Jolanda van Munster, Oded Yarden, Han A B Wösten
{"title":"Growing a circular economy with fungal biotechnology: a white paper.","authors":"Vera Meyer,&nbsp;Evelina Y Basenko,&nbsp;J Philipp Benz,&nbsp;Gerhard H Braus,&nbsp;Mark X Caddick,&nbsp;Michael Csukai,&nbsp;Ronald P de Vries,&nbsp;Drew Endy,&nbsp;Jens C Frisvad,&nbsp;Nina Gunde-Cimerman,&nbsp;Thomas Haarmann,&nbsp;Yitzhak Hadar,&nbsp;Kim Hansen,&nbsp;Robert I Johnson,&nbsp;Nancy P Keller,&nbsp;Nada Kraševec,&nbsp;Uffe H Mortensen,&nbsp;Rolando Perez,&nbsp;Arthur F J Ram,&nbsp;Eric Record,&nbsp;Phil Ross,&nbsp;Volha Shapaval,&nbsp;Charlotte Steiniger,&nbsp;Hans van den Brink,&nbsp;Jolanda van Munster,&nbsp;Oded Yarden,&nbsp;Han A B Wösten","doi":"10.1186/s40694-020-00095-z","DOIUrl":"https://doi.org/10.1186/s40694-020-00095-z","url":null,"abstract":"<p><p>Fungi have the ability to transform organic materials into a rich and diverse set of useful products and provide distinct opportunities for tackling the urgent challenges before all humans. Fungal biotechnology can advance the transition from our petroleum-based economy into a bio-based circular economy and has the ability to sustainably produce resilient sources of food, feed, chemicals, fuels, textiles, and materials for construction, automotive and transportation industries, for furniture and beyond. Fungal biotechnology offers solutions for securing, stabilizing and enhancing the food supply for a growing human population, while simultaneously lowering greenhouse gas emissions. Fungal biotechnology has, thus, the potential to make a significant contribution to climate change mitigation and meeting the United Nation's sustainable development goals through the rational improvement of new and established fungal cell factories. The White Paper presented here is the result of the 2nd Think Tank meeting held by the EUROFUNG consortium in Berlin in October 2019. This paper highlights discussions on current opportunities and research challenges in fungal biotechnology and aims to inform scientists, educators, the general public, industrial stakeholders and policymakers about the current fungal biotech revolution.</p>","PeriodicalId":52292,"journal":{"name":"Fungal Biology and Biotechnology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40694-020-00095-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37825343","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 191
Assessing the efficacy of CRISPR/Cas9 genome editing in the wheat pathogen Parastagonspora nodorum. 评估CRISPR/Cas9基因组编辑在小麦病原菌芽孢副单孢菌中的效果
Fungal Biology and Biotechnology Pub Date : 2020-03-31 eCollection Date: 2020-01-01 DOI: 10.1186/s40694-020-00094-0
Haseena Khan, Megan C McDonald, Simon J Williams, Peter S Solomon
{"title":"Assessing the efficacy of CRISPR/Cas9 genome editing in the wheat pathogen <i>Parastagonspora nodorum</i>.","authors":"Haseena Khan,&nbsp;Megan C McDonald,&nbsp;Simon J Williams,&nbsp;Peter S Solomon","doi":"10.1186/s40694-020-00094-0","DOIUrl":"https://doi.org/10.1186/s40694-020-00094-0","url":null,"abstract":"<p><strong>Background: </strong>The genome-editing tool CRISPR/Cas9 has revolutionized gene manipulation by providing an efficient method to generate targeted mutations. This technique deploys the Cas9 endonuclease and a guide RNA (sgRNA) which interact to form a Cas9-sgRNA complex that initiates gene editing through the introduction of double stranded DNA breaks. We tested the efficacy of the CRISPR/Cas9 approach as a means of facilitating a variety of reverse genetic approaches in the wheat pathogenic fungus <i>Parastagonospora nodorum</i>.</p><p><strong>Results: </strong><i>Parastagonospora nodorum</i> protoplasts were transformed with the Cas9 protein and sgRNA in the form of a preassembled ribonuclear protein (RNP) complex targeting the <i>Tox3</i> effector gene. Subsequent screening of the <i>P. nodorum</i> transformants revealed 100% editing of those mutants screened. We further tested the efficacy of RNP complex when co-transformed with a <i>Tox3</i>-Homology Directed Repair cassette harbouring 1 kb of homologous flanking DNA. Subsequent screening of resulting transformants demonstrated homologous recombination efficiencies exceeding 70%. A further transformation with a <i>Tox3</i>-Homology Directed Repair cassette harbouring a selectable marker with 50 bp micro-homology flanks was also achieved with 25% homologous recombination efficiency. The success of these homology directed repair approaches demonstrate that CRISPR/Cas9 is amenable to other in vivo DNA manipulation approaches such as the insertion of DNA and generating point mutations.</p><p><strong>Conclusion: </strong>These data highlight the significant potential that CRISPR/Cas9 has in expediting transgene-free gene knockouts in <i>Parastagonospora nodorum</i> and also in facilitating other gene manipulation approaches. Access to these tools will significantly decrease the time required to assess the requirement of gene for disease and to undertake functional studies to determine its role.</p>","PeriodicalId":52292,"journal":{"name":"Fungal Biology and Biotechnology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40694-020-00094-0","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37810260","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 11
Promoter tools for further development of Aspergillus oryzae as a platform for fungal secondary metabolite production. 进一步开发米曲霉作为真菌次生代谢物生产平台的启动子工具。
Fungal Biology and Biotechnology Pub Date : 2020-03-23 eCollection Date: 2020-01-01 DOI: 10.1186/s40694-020-00093-1
Maiko Umemura, Kaoru Kuriiwa, Linh Viet Dao, Tetsuya Okuda, Goro Terai
{"title":"Promoter tools for further development of <i>Aspergillus oryzae</i> as a platform for fungal secondary metabolite production.","authors":"Maiko Umemura,&nbsp;Kaoru Kuriiwa,&nbsp;Linh Viet Dao,&nbsp;Tetsuya Okuda,&nbsp;Goro Terai","doi":"10.1186/s40694-020-00093-1","DOIUrl":"https://doi.org/10.1186/s40694-020-00093-1","url":null,"abstract":"<p><strong>Background: </strong>The filamentous fungus <i>Aspergillus oryzae</i> is widely used for secondary metabolite production by heterologous expression; thus, a wide variety of promoter tools is necessary to broaden the application of this species. Here we built a procedure to survey <i>A. flavus</i> genes constitutively highly expressed in 83 transcriptome datasets obtained under various conditions affecting secondary metabolite production, to find promoters useful for heterologous expression of genes in <i>A. oryzae</i>.</p><p><strong>Results: </strong>To test the ability of the promoters of the top 6 genes to induce production of a fungal secondary metabolite, ustiloxin B, we inserted the promoters before the start codon of <i>ustR</i>, which encodes the transcription factor of the gene cluster responsible for ustiloxin B biosynthesis, in <i>A. oryzae</i>. Four of the 6 promoters induced ustiloxin B production in all tested media (solid maize, liquid V8 and PDB media), and also <i>ustR</i> expression. Two of the 4 promoters were those of <i>tef1</i> and <i>gpdA</i>, which are well characterized in <i>A. oryzae</i> and <i>A. nidulans</i>, respectively, whereas the other two, those of AFLA_030930 and AFLA_113120, are newly reported here and show activities comparable to that of the <i>gpdA</i> promoter with respect to induction of gene expression and ustiloxin B production.</p><p><strong>Conclusion: </strong>We newly reported two sequences as promoter tools for secondary metabolite production in <i>A. oryzae</i>. Our results demonstrate that our simple strategy of surveying for constitutively highly expressed genes in large-scale transcriptome datasets is useful for finding promoter sequences that can be used as heterologous expression tools in <i>A. oryzae</i>.</p>","PeriodicalId":52292,"journal":{"name":"Fungal Biology and Biotechnology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-03-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40694-020-00093-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37770411","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
Enabling community-based metrology for wood-degrading fungi. 为木材降解真菌提供基于社区的计量方法。
Fungal Biology and Biotechnology Pub Date : 2020-03-19 eCollection Date: 2020-01-01 DOI: 10.1186/s40694-020-00092-2
Rolando Perez, Marina Luccioni, Rohinton Kamakaka, Samuel Clamons, Nathaniel Gaut, Finn Stirling, Katarzyna P Adamala, Pamela A Silver, Drew Endy
{"title":"Enabling community-based metrology for wood-degrading fungi.","authors":"Rolando Perez, Marina Luccioni, Rohinton Kamakaka, Samuel Clamons, Nathaniel Gaut, Finn Stirling, Katarzyna P Adamala, Pamela A Silver, Drew Endy","doi":"10.1186/s40694-020-00092-2","DOIUrl":"10.1186/s40694-020-00092-2","url":null,"abstract":"<p><strong>Background: </strong>Lignocellulosic biomass could support a greatly-expanded bioeconomy. Current strategies for using biomass typically rely on single-cell organisms and extensive ancillary equipment to produce precursors for downstream manufacturing processes. Alternative forms of bioproduction based on solid-state fermentation and wood-degrading fungi could enable more direct means of manufacture. However, basic methods for cultivating wood-degrading fungi are often ad hoc and not readily reproducible. Here, we developed standard reference strains, substrates, measurements, and methods sufficient to begin to enable reliable reuse of mycological materials and products in simple laboratory settings.</p><p><strong>Results: </strong>We show that a widely-available and globally-regularized consumer product (Pringles™) can support the growth of wood-degrading fungi, and that growth on Pringles™-broth can be correlated with growth on media made from a fully-traceable and compositionally characterized substrate (National Institute of Standards and Technology Reference Material 8492 Eastern Cottonwood Whole Biomass Feedstock). We also establish a Relative Extension Unit (REU) framework that is designed to reduce variation in quantification of radial growth measurements. So enabled, we demonstrate that five laboratories were able to compare measurements of wood-fungus performance via a simple radial extension growth rate assay, and that our REU-based approach reduced variation in reported measurements by up to ~ 75%.</p><p><strong>Conclusions: </strong>Reliable reuse of materials, measures, and methods is necessary to enable distributed bioproduction processes that can be adopted at all scales, from local to industrial. Our community-based measurement methods incentivize practitioners to coordinate the reuse of standard materials, methods, strains, and to share information supporting work with wood-degrading fungi.</p>","PeriodicalId":52292,"journal":{"name":"Fungal Biology and Biotechnology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7081594/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37765966","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Towards a better understanding of the role of nectar-inhabiting yeasts in plant-animal interactions. 为了更好地了解蜜寄生酵母在植物与动物相互作用中的作用。
Fungal Biology and Biotechnology Pub Date : 2020-01-08 eCollection Date: 2020-01-01 DOI: 10.1186/s40694-019-0091-8
Joon Klaps, Bart Lievens, Sergio Álvarez-Pérez
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引用次数: 25
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