Frontiers in Plant Science最新文献

{"title":"Green pepper fruits counting based on improved DeepSort and optimized Yolov5s","authors":"Pengcheng Du, Shang Chen, Xu Li, Wenwu Hu, Nan Lan, Xiangming Lei, Yang Xiang","doi":"10.3389/fpls.2024.1417682","DOIUrl":"https://doi.org/10.3389/fpls.2024.1417682","url":null,"abstract":"Green pepper yield estimation is crucial for establishing harvest and storage strategies.This paper proposes an automatic counting method for green pepper fruits based on object detection and multi-object tracking algorithm. Green pepper fruits have colors similar to leaves and are often occluded by each other, posing challenges for detection. Based on the YOLOv5s, the CS_YOLOv5s model is specifically designed for green pepper fruit detection. In the CS_YOLOv5s model, a Slim-Nick combined with GSConv structure is utilized in the Neck to reduce model parameters while enhancing detection speed. Additionally, the CBAM attention mechanism is integrated into the Neck to enhance the feature perception of green peppers at various locations and enhance the feature extraction capabilities of the model.According to the test results, the CS_YOLOv5s model of mAP, Precision and Recall, and Detection time of a single image are 98.96%, 95%, 97.3%, and 6.3 ms respectively. Compared to the YOLOv5s model, the Detection time of a single image is reduced by 34.4%, while Recall and mAP values are improved. Additionally, for green pepper fruit tracking, this paper combines appearance matching algorithms and track optimization algorithms from SportsTrack to optimize the DeepSort algorithm. Considering three different scenarios of tracking, the MOTA and MOTP are stable, but the ID switch is reduced by 29.41%. Based on the CS_YOLOv5s model, the counting performance before and after DeepSort optimization is compared. For green pepper counting in videos, the optimized DeepSort algorithm achieves ACP (Average Counting Precision), MAE (Mean Absolute Error), and RMSE (Root Mean Squared Error) values of 95.33%, 3.33, and 3.74, respectively. Compared to the original algorithm, ACP increases by 7.2%, while MAE and RMSE decrease by 6.67 and 6.94, respectively. Additionally, Based on the optimized DeepSort, the fruit counting results using YOLOv5s model and CS_YOLOv5s model were compared, and the results show that using the better object detector CS_YOLOv5s has better counting accuracy and robustness.","PeriodicalId":505607,"journal":{"name":"Frontiers in Plant Science","volume":"93 9","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141642560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Metabolic, transcriptomic, and genetic analyses of candidate genes for seed size in watermelon","authors":"Xiqing Wang, Wen Yan, Núria Real, Yunhe Jia, Yongkai Fu, Xuejun Zhang, Haibo You, Yi Cai, Bin Liu","doi":"10.3389/fpls.2024.1394724","DOIUrl":"https://doi.org/10.3389/fpls.2024.1394724","url":null,"abstract":"Seed size (SS) constitutes a pivotal trait in watermelon breeding. In this study, we present findings from an examination of two watermelon accessions, namely, BW85 and F211. Seeds from BW85 exhibited a significant enlargement compared to those of F211 at 13 days after pollination (DAP), with the maximal disparity in seed length and width manifesting at 17 DAP. A comprehensive study involving both metabolic and transcriptomic analyses indicated a significant enrichment of the ubiquinone and other terpenoid-quinone biosynthesis KEGG pathways. To detect the genetic region governing seed size, a BSA-seq analysis was conducted utilizing the F2 (BW85 × F211) population, which resulted in the identification of two adjacent QTLs, namely, SS6.1 and SS6.2, located on chromosomes 6. SS6.1 spanned from Chr06:4847169 to Chr06:5163486, encompassing 33 genes, while SS6.2 ranged from Chr06:5379337 to Chr06:5419136, which included only one gene. Among these genes, 11 exhibited a significant differential expression between BW85 and F211 according to transcriptomic analysis. Notably, three genes (Cla97C06G113960, Cla97C06G114180, and Cla97C06G114000) presented a differential expression at both 13 and 17 DAP. Through annotation, Cla97C06G113960 was identified as a ubiquitin-conjugating enzyme E2, playing a role in the ubiquitin pathway that mediates seed size control. Taken together, our results provide a novel candidate gene influencing the seed size in watermelon, shedding light on the mechanism underlying seed development.","PeriodicalId":505607,"journal":{"name":"Frontiers in Plant Science","volume":"80 23","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141643054","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Plant responses to abiotic stress regulated by histone acetylation","authors":"Fei Wang, Chong-Hua Li, Ying Liu, Ling-Feng He, Ping Li, Junxin Guo, Na Zhang, Bing Zhao, Yang-Dong Guo","doi":"10.3389/fpls.2024.1404977","DOIUrl":"https://doi.org/10.3389/fpls.2024.1404977","url":null,"abstract":"In eukaryotes, histone acetylation and deacetylation play an important role in the regulation of gene expression. Histone acetylation levels are reversibly regulated by histone acetyltransferases (HATs) and histone deacetylases (HDACs). Increasing evidence highlights histone acetylation plays essential roles in the regulation of gene expression in plant response to environmental stress. In this review, we discussed the recent advance of histone acetylation in the regulation of abiotic stress responses including temperature, light, salt and drought stress. This information will contribute to our understanding of how plants adapt to environmental changes. As the mechanisms of epigenetic regulation are conserved in many plants, research in this field has potential applications in improvement of agricultural productivity.","PeriodicalId":505607,"journal":{"name":"Frontiers in Plant Science","volume":"84 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141643283","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Detection, distribution, and functions of RNA N6-methyladenosine (m6A) in plant development and environmental signal responses","authors":"Yang Xiang, Dian Zhang, Lei Li, Yi-Xuan Xue, Chao-Yang Zhang, Qing-Feng Meng, Jin Wang, Xiao-Li Tan, Yu-Long Li","doi":"10.3389/fpls.2024.1429011","DOIUrl":"https://doi.org/10.3389/fpls.2024.1429011","url":null,"abstract":"The epitranscriptomic mark N6-methyladenosine (m6A) is the most common type of messenger RNA (mRNA) post-transcriptional modification in eukaryotes. With the discovery of the demethylase FTO (FAT MASS AND OBESITY-ASSOCIATED PROTEIN) in Homo Sapiens, this modification has been proven to be dynamically reversible. With technological advances, research on m6A modification in plants also rapidly developed. m6A modification is widely distributed in plants, which is usually enriched near the stop codons and 3′-UTRs, and has conserved modification sequences. The related proteins of m6A modification mainly consist of three components: methyltransferases (writers), demethylases (erasers), and reading proteins (readers). m6A modification mainly regulates the growth and development of plants by modulating the RNA metabolic processes and playing an important role in their responses to environmental signals. In this review, we briefly outline the development of m6A modification detection techniques; comparatively analyze the distribution characteristics of m6A in plants; summarize the methyltransferases, demethylases, and binding proteins related to m6A; elaborate on how m6A modification functions in plant growth, development, and response to environmental signals; and provide a summary and outlook on the research of m6A in plants.","PeriodicalId":505607,"journal":{"name":"Frontiers in Plant Science","volume":"2 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141641913","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A novel exopolysaccharide-producing bacterium, Pseudescherichia liriopis sp. nov. isolated from Liriope platyphylla, enhances the growth of Daucus carota subsp. sativus under drought and salinity stress","authors":"Inhyup Kim, Haejin Woo, G. Chhetri, Sunho Park, T. Seo","doi":"10.3389/fpls.2024.1417639","DOIUrl":"https://doi.org/10.3389/fpls.2024.1417639","url":null,"abstract":"Biological and abiotic stresses in plant growth are associated with reduced crop yields. Therefore, improving plant stress resistance can be a crucial strategy to improve crop production. To overcome these problems, plant growth-promoting bacteria are emphasized as one of the alternative tools for sustainable agriculture. This study found a novel strain (L3T) of a plant growth-promoting bacterium in fermented Liriope platyphylla fruit. Strain L3T showed the ability to promote plant growth. The L3T strain promoted plant growth of D. carota subsp. sativus, increasing the length (increase rate compared to the control group, 36.98%), diameter (47.06%), and weight of carrots (81.5%), ultimately increasing the edible area. In addition, we confirmed that plant growth was improved even in situations that inhibited plant growth, such as salinity and drought stress. Strain L3T performed indole production, siderophore production, phosphate solubilization, and nitrogen fixation, all characteristics of a strain that promotes plant growth. Genome analysis revealed genes involved in the growth promotion effects of strain L3T. Additionally, the properties of exopolysaccharides were identified and characterized using FTIR, TGA, and UHPLC. Our results demonstrated that L3 isolated from fermented L. platyphylla fruit can be used to simultaneously alleviate drought and NaCl stress.","PeriodicalId":505607,"journal":{"name":"Frontiers in Plant Science","volume":"9 15","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141642625","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Submerged macrophyte self-recovery potential behind restoration treatments: sources of failure","authors":"M. Rybak, Joanna Rosińska, Łukasz Wejnerowski, Maria A. Rodrigo, Tomasz Joniak","doi":"10.3389/fpls.2024.1421448","DOIUrl":"https://doi.org/10.3389/fpls.2024.1421448","url":null,"abstract":"When exploring the challenges of restoring degraded lakes, we often do not observe the expected results despite executing all planned activities. Our study elucidates the reasons that impede the recovery of submerged macrophytes despite ameliorated light conditions. When prolonged lake degradation occurs, subsequent efforts to increase light availability often prove insufficient, resulting in a persistent turbid water state. In this study, we attempted to determine the reasons for these failures through a germination test and propagule bank analysis conducted in bottom sediments from a severely degraded lake, which underwent restoration. Although the bottom sediments indicate relative potential in the number of oospores and seeds, their germination efficacy remained dismally low. Based on the germination test results and factors affecting the development of submerged macrophytes (physical and chemical parameters, lake morphology), we stated that improvement of light conditions in the lake could be insufficient to recover the vegetation, especially when the potential to renew diverse plant communities from sediments naturally is low. Our findings advocate for a paradigmatic shift in lake restoration strategies. A holistic approach that includes propagule bank assessments before embarking on restoration initiatives and enabling the identification of macrophyte resurgence potentials is recommended. We also advocate for a multifaceted restoration framework, emphasizing the indispensability of augmenting natural recovery mechanisms with targeted interventions. Consequently, in some cases, macrophyte reintroduction could be the only solution. By reintroducing autochthonic species to site-specific ecological dynamics, we anticipate an increased success rate in restituting submerged vegetation, thus catalyzing ecological regeneration within degraded lake ecosystems.","PeriodicalId":505607,"journal":{"name":"Frontiers in Plant Science","volume":"10 22","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141640479","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Expression and antiviral application of exogenous lectin (griffithsin) in sweetpotatoes","authors":"Shuai Liu, Yang Yu, Ke Guo, Qian Zhang, Zhaodong Jia, Morales Rodríguez Alfredo, Peiyong Ma, Hao Xie, X. Bian","doi":"10.3389/fpls.2024.1421244","DOIUrl":"https://doi.org/10.3389/fpls.2024.1421244","url":null,"abstract":"Griffithsin (GRFT) is a highly effective, broad-spectrum, safe, and stable viral inhibitor used to suppress a variety of viruses. However, little information is available on whether GRFT can prevent plant viral diseases. In this study, we constructed a GRFT overexpression vector containing the sweetpotato storage cell signal peptide and generated exogenous GRFT overexpression lines through genetic transformation. The transgenic plants showed notable resistance to sweetpotato virus disease in the virus nursery. To verify the antiplant virus function of GRFT, transient expression in tobacco leaves showed that GRFT inhibited the sweetpotato leaf curl virus (SPLCV). The replication of SPLCV was entirely inhibited when the concentration of GRFT reached a certain level. The results of pulldown and BIFC assays showed that GRFT did not interact with the six components of SPLCV. In addition, the mutated GRFTD/A without the binding ability of carbohydrate and anticoronavirus function, in which three aspartate residues at carbohydrate binding sites were all mutated to alanine, also inhibited SPLCV. Quantitative reverse-transcription PCR analyses showed that the tobacco antiviral-related genes HIN1, ICS1, WRKY40, and PR10 were overexpressed after GRFT/GRFTD/A injection. Furthermore, HIN1, ICS1, and PR10 were more highly expressed in the leaves injected with GRFTD/A. The results suggest that sweetpotato is able to express GRFT exogenously as a bioreactor. Moreover, exogenous GRFT expression inhibits plant viruses by promoting the expression of plant antiviral genes.","PeriodicalId":505607,"journal":{"name":"Frontiers in Plant Science","volume":"6 8","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141642379","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Comparative analysis of cultivated and wild olive genotypes to salinity and drought stress","authors":"J. Tadić, G. Dumičić, Maja Veršić Bratinčević, Sandra Vitko, Z. Liber, Sandra Radić Brkanac","doi":"10.3389/fpls.2024.1423761","DOIUrl":"https://doi.org/10.3389/fpls.2024.1423761","url":null,"abstract":"The Mediterranean region’s harsh conditions, characterized by low rainfall, high solar radiation, and elevated temperatures, pose challenges for vegetation, particularly in the face of climate change. Cultivated olive (Olea europaea subsp. europaea var. europaea) holds historical and economic significance as one of the oldest crops in the Mediterranean. Due to their high germplasm diversity and greater flowering abundance compared to the offspring of cultivated olives, wild olives (Olea europaea subsp. europaea var. sylvestris) could be utilized for selecting new olive cultivars capable of adapting to a changing climate. This research aimed to compare the effects of salt and drought stress on wild and cultivated genotypes by analyzing morphological, physiological, and biochemical parameters. Results showed that shoot length, shoot dry mass, and leaf area are key drought stress indicators in wild olive trees. The results indicated the olive trees more susceptible to salinity stress had lower Na+ and Cl- concentrations in their leaves and took longer to stabilize salt ion levels. Decreased K+ content in roots across all treatments indicated a general stress response. The uptake of Ca2+ appears to be the most energy-efficient response of olive trees to short-term salinity and drought. In contrast to proline and malondialdehyde, trends in superoxide dismutase activity suggest that it is a reliable indicator of salinity and drought stress. Regarding olive adaptability to salinity stress, promising results obtained with two wild olive genotypes merit their further physiological study.","PeriodicalId":505607,"journal":{"name":"Frontiers in Plant Science","volume":"32 10","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141644254","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Adapting to climate change: responses of fine root traits and C exudation in five tree species with different light-use strategy","authors":"Marili Sell, G. Rohula-Okunev, P. Kupper, I. Ostonen","doi":"10.3389/fpls.2024.1389569","DOIUrl":"https://doi.org/10.3389/fpls.2024.1389569","url":null,"abstract":"Trees that are categorised by their light requirements have similarities in their growth strategies and adaptation mechanisms. We aimed to understand the complex responses of elevated air humidity on whole tree fine root carbon (C) exudation (ExC) and respiration rate, morphology, and functional distribution in species with different light requirements. Three light-demanding (LD) species, Populus × wettsteinii, Betula pendula, and Pinus sylvestris, and two shade-tolerant species, Picea abies and Tilia cordata saplings were grown in growth chambers under moderate and elevated air relative humidity (eRH) at two different inorganic nitrogen sources with constant air temperature and light availability. The proportion of assimilated carbon released by ExC, and respiration decreased at eRH; up to about 3 and 27%, respectively. There was an indication of a trade-off between fine root released C and biomass allocation. The elevated air humidity changed the tree biomass allocation and fine root morphology, and the responses were species-specific. The specific fine root area and absorptive root proportion were positively related to canopy net photosynthesis and leaf nitrogen concentration across tree species. The variation in ExC was explained by the trees’ light-use strategy (p < 0.05), showing higher exudation rates in LD species. The LD species had a higher proportion of pioneer root tips, which related to the enhanced ExC. Our findings highlight the significant role of fine root functional distribution and morphological adaptation in determining rhizosphere C fluxes in changing environmental conditions such as the predicted increase of air humidity in higher latitudes.","PeriodicalId":505607,"journal":{"name":"Frontiers in Plant Science","volume":"18 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141641816","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The 4T and 7T introgressions from Amblyopyrum muticum and the 5Au introgression from Triticum urartu increases grain zinc and iron concentrations in Malawian wheat backgrounds","authors":"Veronica Faith Guwela, Moses F. Maliro, Martin R. Broadley, Malcolm J. Hawkesford, James M. Bokosi, S. Grewal, Benedict Coombes, Anthony Hall, Caiyun Yang, Mike Banda, L. Wilson, Julie King","doi":"10.3389/fpls.2024.1346046","DOIUrl":"https://doi.org/10.3389/fpls.2024.1346046","url":null,"abstract":"Micronutrient deficiencies (MNDs) particularly zinc (Zn) and iron (Fe) remain widespread in sub-Saharan Africa (SSA) due to low dietary intake. Wheat is an important source of energy globally, although cultivated wheat is inherently low in grain micronutrient concentrations. Malawian wheat/Am. muticum and Malawian wheat/T. urartu BC1F3 introgression lines, developed by crossing three Malawian wheat varieties (Kenya nyati, Nduna and Kadzibonga) with DH-348 (wheat/Am. muticum) and DH-254 (wheat/T. urartu), were phenotyped for grain Zn and Fe, and associated agronomic traits in Zn-deficient soils, in Malawi. 98% (47) of the BC1F3 introgression lines showed higher Zn above the checks Paragon, Chinese Spring, Kadzibonga, Kenya Nyati and Nduna. 23% (11) of the introgression lines showed a combination of high yields and an increase in grain Zn by 16-30 mg kg -1 above Nduna and Kadzibonga, and 11-25 mg kg -1 above Kenya nyati, Paragon and Chinese Spring. Among the 23%, 64% (7) also showed 8-12 mg kg -1 improvement in grain Fe compared to Nduna and Kenya nyati. Grain Zn concentrations showed a significant positive correlation with grain Fe, whilst grain Zn and Fe negatively and significantly correlated with TKW and grain yield. This work will contribute to the efforts of increasing mineral nutrient density in wheat, specifically targeting countries in the SSA.","PeriodicalId":505607,"journal":{"name":"Frontiers in Plant Science","volume":"10 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141640476","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}