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An Integrated Machine Learning Framework Identifies Prognostic Gene Pair Biomarkers Associated with Programmed Cell Death Modalities in Clear Cell Renal Cell Carcinoma 综合机器学习框架确定了与透明细胞肾细胞癌程序性细胞死亡模式相关的预后基因对生物标志物
Frontiers in Bioscience-Landmark Pub Date : 2024-03-21 DOI: 10.31083/j.fbl2903121
Bohong Chen, Mingguo Zhou, Li Guo, Haoxiang Huang, Xinyue Sun, Zihe Peng, Dapeng Wu, Wei Chen
{"title":"An Integrated Machine Learning Framework Identifies Prognostic Gene Pair Biomarkers Associated with Programmed Cell Death Modalities in Clear Cell Renal Cell Carcinoma","authors":"Bohong Chen, Mingguo Zhou, Li Guo, Haoxiang Huang, Xinyue Sun, Zihe Peng, Dapeng Wu, Wei Chen","doi":"10.31083/j.fbl2903121","DOIUrl":"https://doi.org/10.31083/j.fbl2903121","url":null,"abstract":"","PeriodicalId":503756,"journal":{"name":"Frontiers in Bioscience-Landmark","volume":" 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140222214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Locus Coeruleus-Norepinephrine System: Spheres of Influence and Contribution to the Development of Neurodegenerative Diseases 神经节-去甲肾上腺素系统:影响范围和对神经退行性疾病发展的贡献
Frontiers in Bioscience-Landmark Pub Date : 2024-03-20 DOI: 10.31083/j.fbl2903118
V. N. Nikolenko, I. D. Borminskaya, Arina Timofeevna Nikitina, M. S. Golyshkina, N. A. Rizaeva, M. Oganesyan
{"title":"Locus Coeruleus-Norepinephrine System: Spheres of Influence and Contribution to the Development of Neurodegenerative Diseases","authors":"V. N. Nikolenko, I. D. Borminskaya, Arina Timofeevna Nikitina, M. S. Golyshkina, N. A. Rizaeva, M. Oganesyan","doi":"10.31083/j.fbl2903118","DOIUrl":"https://doi.org/10.31083/j.fbl2903118","url":null,"abstract":"Locus coeruleus is a small bilateral nucleus in the brainstem. It is the main source of norepinephrine (noradrenaline) throughout the central nervous system (about 70% of all norepinephrine in the central nervous system), and, as shown in numerous studies, it is involved in regulating a significant number of functions. The detailed study of the functions of the Locus Coeruleus (LC) and its significance in human life became possible only after the development of histofluorescence methods for monoamines in the 1960s. The widespread locus coeruleus-norepinephrine (LC-NE) projection system regulates the entire central nervous system and modulates sensory processing, motor behavior, arousal","PeriodicalId":503756,"journal":{"name":"Frontiers in Bioscience-Landmark","volume":"7 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140225641","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
YTHDF1 Promotes Proliferation and Inhibits Apoptosis of Gastric Cancer Cells via Upregulating TCF7 mRNA Translation YTHDF1 通过上调 TCF7 mRNA 翻译促进胃癌细胞增殖并抑制其凋亡
Frontiers in Bioscience-Landmark Pub Date : 2024-03-20 DOI: 10.31083/j.fbl2903117
Yuqiang Li, Xiong Guo, Xiaolong Liang, Ziwei Wang
{"title":"YTHDF1 Promotes Proliferation and Inhibits Apoptosis of Gastric Cancer Cells via Upregulating TCF7 mRNA Translation","authors":"Yuqiang Li, Xiong Guo, Xiaolong Liang, Ziwei Wang","doi":"10.31083/j.fbl2903117","DOIUrl":"https://doi.org/10.31083/j.fbl2903117","url":null,"abstract":"","PeriodicalId":503756,"journal":{"name":"Frontiers in Bioscience-Landmark","volume":"31 48","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140226505","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Role of Human Pluripotent Stem Cells in Amyotrophic Lateral Sclerosis: From Biological Mechanism to Practical Implications 人类多能干细胞在肌萎缩侧索硬化症中的作用:从生物学机制到实际意义
Frontiers in Bioscience-Landmark Pub Date : 2024-03-20 DOI: 10.31083/j.fbl2903114
Laura Ceccarelli, L. Verriello, G. Pauletto, Mariarosaria Valente, Leopoldo Spadea, C. Salati, Marco Zeppieri, T. Ius
{"title":"The Role of Human Pluripotent Stem Cells in Amyotrophic Lateral Sclerosis: From Biological Mechanism to Practical Implications","authors":"Laura Ceccarelli, L. Verriello, G. Pauletto, Mariarosaria Valente, Leopoldo Spadea, C. Salati, Marco Zeppieri, T. Ius","doi":"10.31083/j.fbl2903114","DOIUrl":"https://doi.org/10.31083/j.fbl2903114","url":null,"abstract":"Amyotrophic Lateral Sclerosis (ALS) is a neurodegenerative disorder, characterized by progressive loss of both upper and lower motor neurons, resulting in clinical features such as muscle weakness, paralysis, and ultimately, respiratory failure. Nowadays, there is not effective treatment to reverse the progression of the disease, that leads to death within 3–5 years after the onset. Nevertheless, the induced pluripotent stem cells (iPS) technology could be the answer, providing disease modelling, drug testing, and cell-based therapies for this pathology. The aim of this work was to conduct a literature review of the past 5 years about the role of iPS in ALS, to better define the neurobiological mechanisms involved in the pathogenesis and the potential future therapies. The review also deals with advanced and currently available technologies used to reprogram cell lines and generate human motor neurons in vitro , which represent the source to study the pathological processes, the relationship between phenotype and genotype, the disease progression and the potential therapeutic targets of these group of disorders. Specific treatment options with stem cells involve Advance Gene Editing Technology, neuroprotective agents, and cells or exosomes transplantation, aimed to replace dead or damaged nerve cells. In summary, this review comprehensively addresses the role of human pluripotent stem cells (hPSCs) in motor neuron diseases (MND), with a focus on physiopathology, diagnostic and prognostic implications, specific and potential future treatment options. Understanding the biological mechanisms and practical implications of hPSCs in MND is crucial for advancing therapeutic strategies and improving outcomes for patients affected by these devastating diseases.","PeriodicalId":503756,"journal":{"name":"Frontiers in Bioscience-Landmark","volume":"17 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140227050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Host Cell-dependent Modulatory Role of Ras Homolog Enriched in Brain-Like-1 (RhebL1) Protein in Influenza A/NWS/33 Virus-infected Mammalian Cells Ras 同源物富含脑样-1 (RhebL1)蛋白在甲型/乙型/丙型流感病毒感染的哺乳动物细胞中的宿主细胞依赖性调节作用
Frontiers in Bioscience-Landmark Pub Date : 2024-03-20 DOI: 10.31083/j.fbl2903116
Mirko Buttrini, F. Conto
{"title":"Host Cell-dependent Modulatory Role of Ras Homolog Enriched in Brain-Like-1 (RhebL1) Protein in Influenza A/NWS/33 Virus-infected Mammalian Cells","authors":"Mirko Buttrini, F. Conto","doi":"10.31083/j.fbl2903116","DOIUrl":"https://doi.org/10.31083/j.fbl2903116","url":null,"abstract":"","PeriodicalId":503756,"journal":{"name":"Frontiers in Bioscience-Landmark","volume":"5 9","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140227421","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Interferon Regulatory Factor 4 (IRF4) Plays a Key Role in Osteoblast Differentiation of Postmenopausal Osteoporosis 干扰素调节因子 4 (IRF4) 在绝经后骨质疏松症的成骨细胞分化中发挥关键作用
Frontiers in Bioscience-Landmark Pub Date : 2024-03-20 DOI: 10.31083/j.fbl2903115
Xuan Wu, Cuicui Yang, Xiangxu Chen, Zhengming Shan, Xiaotao Wu
{"title":"Interferon Regulatory Factor 4 (IRF4) Plays a Key Role in Osteoblast Differentiation of Postmenopausal Osteoporosis","authors":"Xuan Wu, Cuicui Yang, Xiangxu Chen, Zhengming Shan, Xiaotao Wu","doi":"10.31083/j.fbl2903115","DOIUrl":"https://doi.org/10.31083/j.fbl2903115","url":null,"abstract":"Background : Postmenopausal osteoporosis (PMOP) is a prevalent disease, which features decreased bone mass, bone weakness and deteriorated bone microstructure in postmenopausal women. Although many factors have been revealed to contribute to the occurrence of PMOP, its mechanism remains undefined. This work aimed to identify significant changes in gene expression during PMOP formation and to examine the most valuable differential genes in postmenopausal osteoporosis versus the control group. Methods : The GSE68303 dataset that contains 12 ovariectomize (OVX) experimental and 11 sham groups was downloaded and analyzed. The results indicated that interferon regulatory factor 4 ( IRF4 ) might be a hub gene in the development of postmenopausal osteoporosis. Western blot and immunohistochemistry were carried out to evaluate IRF4 levels in thoracic vertebra extracts from OVX and Sham mice. To assess IRF4’s impact on osteogenic differentiation in postmenopausal bone marrow mesenchymal stem cells (BM-MSCs), IRF4 overexpression (OV-IRF4) and knockdown (Sh-IRF4) plasmids were constructed. Results : The results showed that comparing with the sham group, bone samples from the OVX group showed higher IRF4 expression. Alkaline phosphatase (ALP) staining revealed that IRF4 overexpression significantly inhibited ALP activity, while IRF4 knockdown promoted ALP activity in BM-MSCs. Simvastatin-treated OVX mice showed increased total bone volume/total tissue volume (BV/TV) and elevated Runx2 expression by immunohistochemical staining compared with the OVX group. Conclusions : This study demonstrated that IRF4 is associated with OVX induced osteoporosis, it can regulate bone stability by inhibiting the osteogenic differentiation BM-MSCs. This study may help enhance our understanding of the molecular mechanism of PMOP formation, providing new insights into estrogen defiance induced osteoporosis.","PeriodicalId":503756,"journal":{"name":"Frontiers in Bioscience-Landmark","volume":"3 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140224734","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Electroosmotic and Gyrotactic Microorganisms Effects on MHD Al2O3-Cu/Blood Hybrid Nanofluid Flow through Multi-Stenosed Bifurcated Artery 电渗和陀螺接触微生物对流经多分支分叉动脉的 MHD Al2O3-铜/血液混合纳米流体的影响
Frontiers in Bioscience-Landmark Pub Date : 2024-03-19 DOI: 10.31083/j.fbl2903110
Umesh Khanduri, B. K. Sharma, Bandar Almohsen, Muhammad Mubashir Bhatti
{"title":"Electroosmotic and Gyrotactic Microorganisms Effects on MHD Al2O3-Cu/Blood Hybrid Nanofluid Flow through Multi-Stenosed Bifurcated Artery","authors":"Umesh Khanduri, B. K. Sharma, Bandar Almohsen, Muhammad Mubashir Bhatti","doi":"10.31083/j.fbl2903110","DOIUrl":"https://doi.org/10.31083/j.fbl2903110","url":null,"abstract":"","PeriodicalId":503756,"journal":{"name":"Frontiers in Bioscience-Landmark","volume":"69 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140229617","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Is Osteoarthritis a Vascular Disease? 骨关节炎是血管疾病吗?
Frontiers in Bioscience-Landmark Pub Date : 2024-03-19 DOI: 10.31083/j.fbl2903113
Jon Olansen, Jonathan P. Dyke, Roy K Aaron
{"title":"Is Osteoarthritis a Vascular Disease?","authors":"Jon Olansen, Jonathan P. Dyke, Roy K Aaron","doi":"10.31083/j.fbl2903113","DOIUrl":"https://doi.org/10.31083/j.fbl2903113","url":null,"abstract":"Osteoarthritis (OA) is now considered as a multifaceted disease affecting various articular tissues, including cartilage, bone, synovium, and surrounding ligaments. The pathophysiology strongly implicates intricate chemical communication, primarily through cytokines, leading to the production of degradative enzymes in cartilage, inflammatory peptides in synovium, and structural changes in bone, resulting in characteristic clinical features such as joint deformities and loss of cartilage space seen on X-rays. Recent studies highlight the previously underestimated role of subchondral bone in OA, revealing its permeability to cytokines and raising questions about the influence of abnormal perfusion on OA pathophysiology, suggesting a vascular component in the disease’s etiology. In essence, alterations in bone perfusion, including reduced venous outflow and intraosseous hypertension, play a crucial role in influencing the physicochemical environment of subchondral bone, impacting osteoblast cytokine expression and contributing to trabecular remodeling, changes in chondrocyte phenotype, and ultimately cartilage matrix degeneration in OA. Dynamic contrast (gadolinium) enhanced magnetic resonance imaging (DCE-MRI) was used to quantify perfusion kinetics in normal and osteoarthritic subchondral bone, demonstrating that decreased perfusion temporally precedes and spatially correlates with cartilage lesions in both young Dunkin-Hartley (D-H) guinea pigs and humans with osteoarthritis. Pharmacokinetic analysis of DCE-MRI generated data reveals decreased tracer clearance and outflow obstruction in the medial tibial plateau of osteoarthritic guinea pigs, coinciding with progressive cartilage degradation, loss of Safranin O staining, and increased expression of matrix metalloproteinases and interleukin-1. Positron emission tomographic (PET) scanning using 18 F-Fluoride reveals a relationship among bone blood flow, cartilage lesions, and 18 F-Fluoride influx rate in OA, highlighting the intricate relationships between decreased perfusion, altered bone metabolism, and the progression of osteoarthritis. These findings, supported by 18 F-Fluoride PET data, suggest the presence of venous stasis associated with outflow obstruction, emphasizing the role of decreased subchondral bone perfusion in the pathophysiology of OA and its association with reduced osteoblast activity and advanced cartilage degeneration.","PeriodicalId":503756,"journal":{"name":"Frontiers in Bioscience-Landmark","volume":"53 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140230144","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antibacterial Properties of Bacterial Endophytes Isolated from the Medicinal Plant Origanum heracleoticum L. 从药用植物牛至(Origanum heracleoticum L.)中分离出的内生细菌的抗菌特性
Frontiers in Bioscience-Landmark Pub Date : 2024-03-19 DOI: 10.31083/j.fbl2903111
Giulia Semenzato, Alberto Bernacchi, Sara Amata, Angela Bechini, Fabiola Berti, C. Calonico, Valentina Catania, Antonia Esposito, A. Puglia, A. P. Piccionello, Giovanni Emiliani, S. Biffi, Renato Fani
{"title":"Antibacterial Properties of Bacterial Endophytes Isolated from the Medicinal Plant Origanum heracleoticum L.","authors":"Giulia Semenzato, Alberto Bernacchi, Sara Amata, Angela Bechini, Fabiola Berti, C. Calonico, Valentina Catania, Antonia Esposito, A. Puglia, A. P. Piccionello, Giovanni Emiliani, S. Biffi, Renato Fani","doi":"10.31083/j.fbl2903111","DOIUrl":"https://doi.org/10.31083/j.fbl2903111","url":null,"abstract":"","PeriodicalId":503756,"journal":{"name":"Frontiers in Bioscience-Landmark","volume":"39 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140229168","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antimicrobial Resistance and the Genomic Epidemiology of Multidrug-Resistant Salmonella enterica serovar Enteritidis ST11 in China 中国耐多药肠炎沙门氏菌ST11的抗菌性和基因组流行病学研究
Frontiers in Bioscience-Landmark Pub Date : 2024-03-19 DOI: 10.31083/j.fbl2903112
Jie Liu, Yue Hou, Linna Zhao, Gang Chen, Jialiang Chen, Qiang Zhao, Liyan Ye, Shenghui Cui, Chengbin Wang
{"title":"Antimicrobial Resistance and the Genomic Epidemiology of Multidrug-Resistant Salmonella enterica serovar Enteritidis ST11 in China","authors":"Jie Liu, Yue Hou, Linna Zhao, Gang Chen, Jialiang Chen, Qiang Zhao, Liyan Ye, Shenghui Cui, Chengbin Wang","doi":"10.31083/j.fbl2903112","DOIUrl":"https://doi.org/10.31083/j.fbl2903112","url":null,"abstract":"","PeriodicalId":503756,"journal":{"name":"Frontiers in Bioscience-Landmark","volume":"66 s95","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140229957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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