bioRxiv - Plant Biology最新文献

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Rpt5 encodes a receptor-like protein that provides broad and effective net form net blotch (Pyrenophora teres f. teres) resistance in barley Rpt5 编码一种类似于受体的蛋白质,可为大麦提供广泛而有效的网状网斑病(Pyrenophora teres f. teres)抗性
bioRxiv - Plant Biology Pub Date : 2024-08-10 DOI: 10.1101/2024.08.09.607401
Karl Effertz, Jonathan K Richards, Shaun James Clare, Madeline del Castillo, Roshan Sharma Poudel, Mengyuan Li, Jianwei Zhang, Matthew James Moscou, Timothy Friesen, Robert Saxon Brueggeman
{"title":"Rpt5 encodes a receptor-like protein that provides broad and effective net form net blotch (Pyrenophora teres f. teres) resistance in barley","authors":"Karl Effertz, Jonathan K Richards, Shaun James Clare, Madeline del Castillo, Roshan Sharma Poudel, Mengyuan Li, Jianwei Zhang, Matthew James Moscou, Timothy Friesen, Robert Saxon Brueggeman","doi":"10.1101/2024.08.09.607401","DOIUrl":"https://doi.org/10.1101/2024.08.09.607401","url":null,"abstract":"The foliar disease net form net blotch (NFNB), caused by the necrotrophic fungal pathogen Pyrenophora teres f. teres (Ptt), causes significant yield and quality losses of barley worldwide. Dominant resistance conferred by the Resistance to Pyrenophora teres 5 (Rpt5) gene from barley line CI5791 is the broadest and most effective resistance reported in this pathosystem. The Rpt5 locus was identified in multiple independent genetic studies utilizing diverse host populations and Ptt isolates, and harbors both dominant Rpt5 resistance and isolate-specific susceptibility genes/alleles that are dominant in the absence of Rpt5, designated susceptibility to Pyrenophora teres 1 (Spt1). Ptt virulence and avirulence effectors from diverse pathogen isolates genetically interact with the Rpt5/Spt1 locus, suggesting a complex locus with a function targeted by the evolution of a diversity of pathogen effectors. High-resolution mapping utilizing 1,920 recombinant gametes from a CI5791 x Tifang biparental population, identified 12 candidate genes in an ~4.6 Mb delimited region in the cv Morex V3 genome assembly, but is 1.1 − 2.2 Mb in the pangenome assemblies, containing 5−12 genes. Analysis revealed a strong correlation between the CI5791 allele of a receptor-like protein (RLP), provisionally designated Rpt5 candidate gene 1, (Rcg1), and broad Rpt5−mediated resistance. Two independent transformants of the CI5791 Rcg1 allele in the susceptible cv Golden Promise background showed significantly increased resistance when challenged with Rpt5 avirulent Ptt isolates 6A, 15A, and 0−1 compared to the Golden Promise wildtype. Thus, Rpt5, encodes an RLP and is the first net blotch resistance gene cloned in barley.","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141941364","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRISPR-Cas9 mediated deletions of FvMYB46 reduces fruit set and biosynthesis of flavonoids in Fragaria vesca CRISPR-Cas9 介导的 FvMYB46 基因缺失会降低藤黄属植物的坐果率和黄酮类化合物的生物合成能力
bioRxiv - Plant Biology Pub Date : 2024-08-09 DOI: 10.1101/2024.08.07.607017
Arti Rai, Magne Nordang Skårn, Torstein Tengs, Abdelhameed Elameen, Mathias Rudolf Amundsen, Oskar Schnedler Bjorå, Lisa Karine Haugland, Igor A Yakovlev, May Bente Brurberg, Tage Thorstensen
{"title":"CRISPR-Cas9 mediated deletions of FvMYB46 reduces fruit set and biosynthesis of flavonoids in Fragaria vesca","authors":"Arti Rai, Magne Nordang Skårn, Torstein Tengs, Abdelhameed Elameen, Mathias Rudolf Amundsen, Oskar Schnedler Bjorå, Lisa Karine Haugland, Igor A Yakovlev, May Bente Brurberg, Tage Thorstensen","doi":"10.1101/2024.08.07.607017","DOIUrl":"https://doi.org/10.1101/2024.08.07.607017","url":null,"abstract":"Secondary metabolites produced by the phenylpropanoid pathway, which is regulated by transcription factors of the MYB family, play crucial roles in this early phase of fruit development. The MYB46 transcription factor is a key regulator of secondary cell wall structure and lignin and flavonoid biosynthesis in many plants, but little is known about its activity in flowers and berries in <em> F. vesca.</em> For functional analysis of FvMYB46, we designed a CRISPR-Cas9 construct with an endogenous <em>F. vesca</em> specific U6-promoter for efficient and specific expression of two gRNAs targeting the first exon of <em>FvMYB46</em>. This generated mutants with an in frame 81-bp deletion of the first conserved MYB-domain or an out of frame 82-bp deletion potentially knocking out the gene function. In both types of mutant plants, pollen germination and the frequency of flowers developing to mature berries was significantly reduced compared to wild type. Transcriptomic analysis of flowers demonstrated that FvMYB46 is positively regulating the expression of genes involved in pollen germination, homeostasis of reactive oxygen species (ROS) and the phenylpropanoid pathway, including secondary cell wall biosynthesis and flavonoid biosynthesis, while has a negative impact on carbohydrate metabolism. In <em>FvMYB46</em>-mutant flowers, the flavonols and flavan-3-olscontent, especially epicatechin, quercetin-glucoside and kaempferol-3-coumaroylhexoside were reduced, and we observed a local reduction of lignin content in anthers. Together these results suggest that MYB46 control fertility and efficient fruit set by regulating cell wall structure, flavonoid biosynthesis, carbohydrate metabolism and ROS- signaling in flowers and early fruit development in <em>F. vesca.</em>","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141941345","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A PthXo2B ortholog in Xanthomonas oryzae pv oryzae strain IX-221 acts as a major virulence factor on indica rice without activating a Clade III SWEET gene. Xanthomonas oryzae pv oryzae 菌株 IX-221 中的 PthXo2B 同源物是籼稻上的主要毒力因子,但不激活 Clade III SWEET 基因。
bioRxiv - Plant Biology Pub Date : 2024-08-09 DOI: 10.1101/2024.08.08.607113
Prashant Mishra, Shakespear S, Sara Catherine Carpenter, Hamsa Sekar, Vigi S, Anith K N, Prasanta Kumar Dash, Adam J. Bogdanove, Rhitu Rai
{"title":"A PthXo2B ortholog in Xanthomonas oryzae pv oryzae strain IX-221 acts as a major virulence factor on indica rice without activating a Clade III SWEET gene.","authors":"Prashant Mishra, Shakespear S, Sara Catherine Carpenter, Hamsa Sekar, Vigi S, Anith K N, Prasanta Kumar Dash, Adam J. Bogdanove, Rhitu Rai","doi":"10.1101/2024.08.08.607113","DOIUrl":"https://doi.org/10.1101/2024.08.08.607113","url":null,"abstract":"To infect rice, Xanthomonas oryzae pv. oryzae (Xoo) deploys transcription activator-like effectors (TALEs) that specifically bind and upregulate host 'susceptibility' (S) genes. 34-amino acid (aa) repeats in TALEs interact one-to-one with DNA bases. Variation at positions 12 and 13 in each repeat, the repeat-variable diresidue (RVD), determine specificity. Some repeat variants shorter or longer than 34 aa can disengage to accommodate a single base deletion in the target sequence. OsSWEET11, 13, and 14 are key S genes, targeted by different TALEs from diverse Xoo strains. xa13 is a SWEET11 allele lacking the TALE binding site and thus conferring resistance. xa13 is overcome by TALEs that activate SWEET13 or SWEET14. We report here that an xa13-compatible Xoo strain, IX-221, from India, harbours an ortholog of the SWEET14-targeting TALE PthXo3 and two orthologs of the SWEET13-cognate PthXo2, each with one or two 36-aa repeats capable of disengaging. One of the PthXo2 orthologs, PthXo2B<sub>IX221</sub>, has a repeat region identical to the previously characterized PthXo2B<sub>PXO61</sub>, except for a two amino acid difference near the end of the 19th repeat. Like PthXo2B<sub>PXO61</sub>, PthXo2B<sub>IX221</sub> upregulates SWEET13 in japonica rice and no SWEET in indica rice, but unlike PthXo2B <sub> PXO61</sub> it nonetheless renders indica rice susceptible, pointing to an alternative S gene. Further, a designer TALE (dTALE) constructed using a standard, consensus sequence for each repeat and RVDs identical to those of PthXo2B<sub>IX221</sub> failed to render indica rice susceptible. Alignment of the PthXo2B<sub>IX221</sub> repeats shows a departure from the consensus in each of two repeats carrying the RVD 'NN': the sequence 'MAIAN' in place of 'VAIAS' beginning at position 7. Together, the PthXo2B<sub>IX221</sub> results thus suggest that non-RVD sequence variation affects TALE targeting profiles. More broadly, the presence of the three aberrant repeat-harbouring TALEs in IX-221 suggests that widespread deployment of xa13 in India resulted in strains super-equipped to overcome it, capable of activating multiple SWEET genes and alleles as well as an apparent alternate S gene.","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141941478","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dihydroxyhexanoic acid biosynthesis controls turgor in pathogenic fungi 二羟基己酸的生物合成控制着病原真菌的张力
bioRxiv - Plant Biology Pub Date : 2024-08-09 DOI: 10.1101/2024.08.07.606736
Naoyoshi Kumakura, Takayuki Motoyama, Keisuke Miyazawa, Toshihiko Nogawa, Katsuma Yonehara, Kaori Sakai, Nobuaki Ishihama, Kaisei Matsumori, Pamela Gan, Hiroyuki Koshino, Takeshi Fukuma, Richard J. O'Connell, Ken Shirasu
{"title":"Dihydroxyhexanoic acid biosynthesis controls turgor in pathogenic fungi","authors":"Naoyoshi Kumakura, Takayuki Motoyama, Keisuke Miyazawa, Toshihiko Nogawa, Katsuma Yonehara, Kaori Sakai, Nobuaki Ishihama, Kaisei Matsumori, Pamela Gan, Hiroyuki Koshino, Takeshi Fukuma, Richard J. O'Connell, Ken Shirasu","doi":"10.1101/2024.08.07.606736","DOIUrl":"https://doi.org/10.1101/2024.08.07.606736","url":null,"abstract":"Many plant pathogenic fungi penetrate host surfaces mechanically, using turgor pressure generated by appressoria, specialized infection cells. These appressoria develop semipermeable cell walls and accumulate osmolytes internally to create turgor by osmosis. While melanin is known to be important for turgor generation, the mechanism for wall semipermeability has remained unclear. Here we identify <em>PKS2 and PBG13</em>, by reverse genetics, as crucial for forming the semipermeable barrier in anthracnose and rice blast fungi. These genes encode enzymes that synthesize 3,5-dihydroxyhexanoic acid polymers essential for the cell wall properties. Deleting these enzymes impairs cell wall porosity, abolishing turgor and pathogenicity without affecting melanization. Our findings uncover a novel mechanism of turgor generation, linking enzyme function to pathogen penetration and disease potential, presenting new targets for disease control.","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141941479","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A cell fractionation and quantitative proteomics pipeline to enable functional analyses of cotton fiber development 通过细胞分馏和定量蛋白质组学管道对棉花纤维发育进行功能分析
bioRxiv - Plant Biology Pub Date : 2024-08-09 DOI: 10.1101/2024.08.08.603566
Youngwoo Lee, Heena Rani, Eileen L Mallery, Daniel B Szymanski
{"title":"A cell fractionation and quantitative proteomics pipeline to enable functional analyses of cotton fiber development","authors":"Youngwoo Lee, Heena Rani, Eileen L Mallery, Daniel B Szymanski","doi":"10.1101/2024.08.08.603566","DOIUrl":"https://doi.org/10.1101/2024.08.08.603566","url":null,"abstract":"Cotton fibers are aerial trichoblasts that employ a highly polarized diffuse growth mechanism to emerge from the developing ovule epidermis. After executing a complicated morphogenetic program, the cells reach lengths over 2 cm and serve as the foundation of a multi-billion-dollar textile industry. Important traits such as fiber diameter, length, and strength are defined by the growth patterns and cell wall properties of individual cells. At present, the ability to engineer fiber traits is limited by our lack of understanding regarding the primary controls governing the rate, duration, and patterns of cell growth. To gain insights into the compartmentalized functions of proteins in cotton fiber cells, we developed a label-free liquid chromatography mass spectrometry method for systems level analyses of fiber proteome. Purified fibers from a single locule were used to fractionate the fiber proteome into apoplast (APOT), membrane-associated (p200), and crude cytosolic (s200) fractions. Subsequently, proteins were identified, and their localizations and potential functions were analyzed using combinations of size exclusion chromatography, statistical and bioinformatic analyses. This method had good coverage of the p200 and apoplast fractions, the latter of which was dominated by proteins associated with particulate membrane-enclosed compartments. The apoplastic proteome was diverse, the proteins were not degraded, and some displayed distinct multimerization states compared to their cytosolic pool. This quantitative proteomic pipeline can be used to improve coverage and functional analyses of the cotton fiber proteome as a function of developmental time or differing genotypes.","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141941475","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A genome-wide association study identifies markers and candidate genes affecting tolerance to the wheat pathogen Zymoseptoria tritici 全基因组关联研究确定了影响小麦对三尖杉病原体耐受性的标记和候选基因
bioRxiv - Plant Biology Pub Date : 2024-08-09 DOI: 10.1101/2024.08.08.607179
Alexey Mikaberidze, Bruce A. McDonald, Lukas Kronenberg
{"title":"A genome-wide association study identifies markers and candidate genes affecting tolerance to the wheat pathogen Zymoseptoria tritici","authors":"Alexey Mikaberidze, Bruce A. McDonald, Lukas Kronenberg","doi":"10.1101/2024.08.08.607179","DOIUrl":"https://doi.org/10.1101/2024.08.08.607179","url":null,"abstract":"Plants defend themselves against pathogens using either resistance, measured as the host's ability to limit pathogen multiplication, or tolerance, measured as the host's ability to reduce the negative effects of infection. Tolerance is a promising trait for crop breeding, but its genetic basis has rarely been studied and remains poorly understood. Here, we reveal the genetic basis of leaf tolerance to the fungal pathogen Zymoseptoria tritici that causes the globally important septoria tritici blotch disease on wheat. Leaf tolerance to Z. tritici is a quantitative trait that was recently discovered in wheat by using automated image analyses that quantified the symptomatic leaf area and counted the number of pycnidia found on the same leaf. A genome-wide association study including both tolerance and resistance to STB found a strong negative genetic correlation between these traits, indicative of a trade-off. We identified four chromosome intervals associated with tolerance and a separate chromosome interval associated with resistance. Within these intervals, we identified candidate genes, including wall-associated kinases similar to Stb6, the first cloned STB resistance gene. A trade-off between tolerance and resistance would hinder breeding simultaneously for both traits, but our findings suggest a way forward using marker-assisted breeding. We expect that the methods described here can be used to characterize tolerance to other fungal diseases that produce visible fruiting bodies, such as speckled leaf blotch on barley, potentially unveiling conserved tolerance mechanisms shared among plant species.","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141941476","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spatio-temporal modeling of host-pathogen interactions using level set method 利用水平集方法建立宿主-病原体相互作用的时空模型
bioRxiv - Plant Biology Pub Date : 2024-08-09 DOI: 10.1101/2024.08.09.607313
Sheila Rae E. Permanes, Youcef Mammeri, Melen Leclerc
{"title":"Spatio-temporal modeling of host-pathogen interactions using level set method","authors":"Sheila Rae E. Permanes, Youcef Mammeri, Melen Leclerc","doi":"10.1101/2024.08.09.607313","DOIUrl":"https://doi.org/10.1101/2024.08.09.607313","url":null,"abstract":"Phenotyping host-pathogen interactions is crucial for understanding infectious diseases in plants. Traditionally, this process has relied on visual assessments or manual measurements, which can be subjective and labor-intensive. Recent advances in image processing and mathematical modeling enable precise and high-throughput phenotyping. In this study, we propose an innovative approach in plant pathology by combining image processing techniques with the level set method. This integrated approach leverages the strengths of both methodologies to provide accurate, robust, and detailed analysis of leaf and lesion evolution. By employing this combination, we achieve precise delineation of lesion boundaries and track their progression over time, offering clear visual feedback. This enhances the ability of the method to monitor plant health status comprehensively.\u0000The results, which track the growth of Peyronellaea pinodes on the stipules of two pea cultivars and the associated leaf deformation, provide an accurate visual representation of disease progression. This model represents a significant advancement in plant disease phenotyping, offering precise and detailed insights that can enhance our understanding of host-pathogen interactions.","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141941368","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineering the plant intracellular immune receptor Sr50 to restore recognition of the AvrSr50 escape mutant 改造植物细胞内免疫受体 Sr50 以恢复对 AvrSr50 逃逸突变体的识别
bioRxiv - Plant Biology Pub Date : 2024-08-09 DOI: 10.1101/2024.08.07.607039
Kyungyong Seong, Wei Wei, Brandon Vega, Amanda Dee, Griselda Ramirez-Bernardino, Rakesh Kumar, Lorena Parra, Ksenia Krasileva
{"title":"Engineering the plant intracellular immune receptor Sr50 to restore recognition of the AvrSr50 escape mutant","authors":"Kyungyong Seong, Wei Wei, Brandon Vega, Amanda Dee, Griselda Ramirez-Bernardino, Rakesh Kumar, Lorena Parra, Ksenia Krasileva","doi":"10.1101/2024.08.07.607039","DOIUrl":"https://doi.org/10.1101/2024.08.07.607039","url":null,"abstract":"Sr50, an intracellular nucleotide-binding leucine-rich repeat receptor (NLR), confers resistance of wheat against stem rust caused by the fungal pathogen <em>Puccinia graminis</em> f. sp. <em>tritici</em>. The receptor recognizes the pathogen effector AvrSr50 through its C-terminal leucine-rich repeat domain, initiating a localized cell death immune response. However, this immunity is compromised by mutations in the effector, as in the escape mutant AvrSr50<sup>QCMJC</sup>, which evades Sr50 detection. In this study, we employed iterative computational structural analyses and site-directed mutagenesis for rational engineering of Sr50 to gain recognition of AvrSr50<sup>QCMJC</sup>. Following an initial structural hypothesis driven by molecular docking, we identified the Sr50<sup>K711D</sup> single mutant, which induces an intermediate immune response against AvrSr50<sup>QCMJC</sup> without losing recognition against AvrSr50. Increasing gene expression with a stronger promoter enabled the mutant to elicit a robust response, indicating weak effector recognition can be complemented by enhanced receptor expression. Further structural refinements led to the creation of five double mutants and two triple mutants with dual recognition of AvrSr50 and AvrSr50<sup>QCMJC</sup> with greater immune response intensities than Sr50<sup>K711D</sup> against the escape mutant. All effective mutations against AvrSr50<sup>QCMJC</sup> required the K711D substitution, indicating that multiple solutions exist for gain of recognition, but the path to reach these mutations may be confined. Furthermore, this single substitution alters the prediction of AlphaFold 2, allowing it to model the complex structure of Sr50<sup>K711D</sup> and AvrSr50 that match our final structural hypothesis. Collectively, our study outlines a framework for rational engineering of NLR systems to overcome pathogen escape mutations and provides datasets for future computational models for NLR resurrection.","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141941344","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Insights into the role of dopamine in rhizosphere microbiome assembly 洞察多巴胺在根瘤微生物组组合中的作用
bioRxiv - Plant Biology Pub Date : 2024-08-08 DOI: 10.1101/2024.08.07.607067
Yezhang Ding, Hunter K. Vogel, Yi Zhai, Hans K. Carlson, Peter F. Andeer, Vlastimil Novak, Nakian Kim, Benjamin P. Bowen, Amber N. Golini, Suzanne M. Kosina, Devin Coleman-Derr, John P. Vogel, Trent R. Northen
{"title":"Insights into the role of dopamine in rhizosphere microbiome assembly","authors":"Yezhang Ding, Hunter K. Vogel, Yi Zhai, Hans K. Carlson, Peter F. Andeer, Vlastimil Novak, Nakian Kim, Benjamin P. Bowen, Amber N. Golini, Suzanne M. Kosina, Devin Coleman-Derr, John P. Vogel, Trent R. Northen","doi":"10.1101/2024.08.07.607067","DOIUrl":"https://doi.org/10.1101/2024.08.07.607067","url":null,"abstract":"Dopamine plays a critical role in animal physiology and interactions with gut microbes. In plants, dopamine is known to function in plant defense and abiotic stress tolerance; however, its role in mediating plant-microbiome interactions remains unexplored. In this study, we observed that dopamine is one of the most abundant exometabolites with natural variation in root exudates across diverse Brachypodium distachyon lines, suggesting a potential role in rhizosphere microbial assembly. To further investigate this, we colonized ten natural B. distachyon lines with a 16-member bacterial synthetic community (SynCom), collected paired metabolomic and 16S rRNA sequencing data, and performed an association analysis. Our results revealed that dopamine levels in root exudates were significantly associated with the abundance of six SynCom members in a hydroponic system. In vitro growth studies demonstrated that dopamine had a significant effect on the growth of the same six bacterial isolates. Additionally, treating soil directly with dopamine enriched Actinobacteria, consistent with both the SynCom-dopamine correlations and the isolate growth results. Collectively, our study underscores the selective influence of dopamine on rhizosphere microbial communities, with implications for precision microbiome management.","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141941346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Single component CRISPR-mediated base- editors for Agrobacterium and their use to develop an improved suite of strains 单组分 CRISPR 介导的农杆菌碱基编辑器及其在开发改良菌株系列中的应用
bioRxiv - Plant Biology Pub Date : 2024-08-07 DOI: 10.1101/2024.08.04.606528
Vincent J. Pennetti, Peter R. LaFayette, Wayne Allen Parrott
{"title":"Single component CRISPR-mediated base- editors for Agrobacterium and their use to develop an improved suite of strains","authors":"Vincent J. Pennetti, Peter R. LaFayette, Wayne Allen Parrott","doi":"10.1101/2024.08.04.606528","DOIUrl":"https://doi.org/10.1101/2024.08.04.606528","url":null,"abstract":"Agrobacterium mediated plant transformation largely depends on two distinct strain lineages – C58 and Ach5. To better serve the plant transformation community, we have created a suite of auxotrophic and auxotrophic recombinant deficient mutants of C58 derivatives EHA105, GV3101::pMP90, and Ach5 derivative LBA4404. While these derivatives are useful, having additional strain backgrounds available would help expand the repertoire for plant transformation even further. Toward that end, two underutilized hypervirulent strains are K599 (NCPPB 2659), and Chry5—but disarmed variants are not easily accessible. To improve availability, we produced disarmed versions of <em>A. rhizogenes</em> strain K599 and <em>A. tumefaciens</em> strain Chry5 and introduced the same desirable mutations as with the other lineages. Each thymidine auxotrophy and recombination deficiency were introduced to existing and newly disarmed Agrobacterium strains via loss of function mutations conferred to <em>thyA</em> and <em>recA</em>, respectively, through CRISPR-mediated base-editing of codons amenable to nonsense mutation. To streamline the editing process, we created a series of visually marked single component base-editor vectors and a corresponding guide-filtering Geneious Prime wrapper plugin for expedited guide filtering. These new strains, the simplified CRISPR-mediated base-editor plasmids, and streamlined workflow will improve the ease with which future <em>Agrobacterium</em> strain derivatives are created while also supporting plant transformation at large.","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141941481","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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