Methods in Microbiology最新文献

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Solid and Suspension Microarrays for Microbial Diagnostics. 用于微生物诊断的固体和悬浮微阵列。
4区 生物学
Methods in Microbiology Pub Date : 2015-01-01 Epub Date: 2015-05-14 DOI: 10.1016/bs.mim.2015.04.002
Steve Miller, Ulas Karaoz, Eoin Brodie, Sherry Dunbar
{"title":"Solid and Suspension Microarrays for Microbial Diagnostics.","authors":"Steve Miller, Ulas Karaoz, Eoin Brodie, Sherry Dunbar","doi":"10.1016/bs.mim.2015.04.002","DOIUrl":"10.1016/bs.mim.2015.04.002","url":null,"abstract":"<p><p>Advancements in molecular technologies have provided new platforms that are being increasingly adopted for use in the clinical microbiology laboratory. Among these, microarray methods are particularly well suited for diagnostics as they allow multiplexing, or the ability to test for multiple targets simultaneously from the same specimen. Microarray technologies commonly used for the detection and identification of microbial targets include solid-state microarrays, electronic microarrays and bead suspension microarrays. Microarray methods have been applied to microbial detection, genotyping and antimicrobial resistance gene detection. Microarrays can offer a panel approach to diagnose specific patient presentations, such as respiratory or gastrointestinal infections, and can discriminate isolates by genotype for tracking epidemiology and outbreak investigations. And, as more information has become available on specific genes and pathways involved in antimicrobial resistance, we are beginning to be able to predict susceptibility patterns based on sequence detection for particular organisms. With further advances in automated microarray processing methods and genotype-phenotype prediction algorithms, these tests will become even more useful as an adjunct or replacement for conventional antimicrobial susceptibility testing, allowing for more rapid selection of targeted therapy for infectious diseases.</p>","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7172482/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Virology: The Next Generation from Digital PCR to Single Virion Genomics 病毒学:从数字PCR到单病毒体基因组学的新一代
4区 生物学
Methods in Microbiology Pub Date : 2015-01-01 DOI: 10.1016/BS.MIM.2015.09.001
R. White, J. Cardenas, R. Hayden
{"title":"Virology: The Next Generation from Digital PCR to Single Virion Genomics","authors":"R. White, J. Cardenas, R. Hayden","doi":"10.1016/BS.MIM.2015.09.001","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.09.001","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.09.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117749","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Chapter 17 - Artificial Nucleic Acid Probes and Their Applications in Clinical Microbiology 第十七章:人工核酸探针及其在临床微生物学中的应用
4区 生物学
Methods in Microbiology Pub Date : 2015-01-01 DOI: 10.1016/BS.MIM.2015.05.003
A. Singer, Yi-Wei Tang
{"title":"Chapter 17 - Artificial Nucleic Acid Probes and Their Applications in Clinical Microbiology","authors":"A. Singer, Yi-Wei Tang","doi":"10.1016/BS.MIM.2015.05.003","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.05.003","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.05.003","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117502","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Clinical Applications of Quantitative Real-Time PCR in Virology. 定量实时 PCR 在病毒学中的临床应用。
4区 生物学
Methods in Microbiology Pub Date : 2015-01-01 Epub Date: 2015-07-07 DOI: 10.1016/bs.mim.2015.04.005
Julia Engstrom-Melnyk, Pedro L Rodriguez, Olivier Peraud, Raymond C Hein
{"title":"Clinical Applications of Quantitative Real-Time PCR in Virology.","authors":"Julia Engstrom-Melnyk, Pedro L Rodriguez, Olivier Peraud, Raymond C Hein","doi":"10.1016/bs.mim.2015.04.005","DOIUrl":"10.1016/bs.mim.2015.04.005","url":null,"abstract":"<p><p>Since the invention of the polymerase chain reaction (PCR) and discovery of <i>Taq</i> polymerase, PCR has become a staple in both research and clinical molecular laboratories. As clinical and diagnostic needs have evolved over the last few decades, demanding greater levels of sensitivity and accuracy, so too has PCR performance. Through optimisation, the present-day uses of real-time PCR and quantitative real-time PCR are enumerable. The technique, combined with adoption of automated processes and reduced sample volume requirements, makes it an ideal method in a broad range of clinical applications, especially in virology. Complementing serologic testing by detecting infections within the pre-seroconversion window period and infections with immunovariant viruses, real-time PCR provides a highly valuable tool for screening, diagnosing, or monitoring diseases, as well as evaluating medical and therapeutic decision points that allows for more timely predictions of therapeutic failures than traditional methods and, lastly, assessing cure rates following targeted therapies. All of these serve vital roles in the continuum of care to enhance patient management. Beyond this, quantitative real-time PCR facilitates advancements in the quality of diagnostics by driving consensus management guidelines following standardisation to improve patient outcomes, pushing for disease eradication with assays offering progressively lower limits of detection, and rapidly meeting medical needs in cases of emerging epidemic crises involving new pathogens that may result in significant health threats.</p>","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7148891/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117437","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Chapter 10 - Accurate Whole-Genome Sequencing-Based Epidemiological Surveillance of Mycobacterium Tuberculosis 第十章-基于精确全基因组测序的结核分枝杆菌流行病学监测
4区 生物学
Methods in Microbiology Pub Date : 2015-01-01 DOI: 10.1016/BS.MIM.2015.04.001
H. Pouseele, P. Supply
{"title":"Chapter 10 - Accurate Whole-Genome Sequencing-Based Epidemiological Surveillance of Mycobacterium Tuberculosis","authors":"H. Pouseele, P. Supply","doi":"10.1016/BS.MIM.2015.04.001","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.04.001","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.04.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117811","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Molecular diagnostics in the diagnosis of parasitic infection 分子诊断在寄生虫感染诊断中的应用
4区 生物学
Methods in Microbiology Pub Date : 2015-01-01 DOI: 10.1016/BS.MIM.2015.05.001
B. Pritt
{"title":"Molecular diagnostics in the diagnosis of parasitic infection","authors":"B. Pritt","doi":"10.1016/BS.MIM.2015.05.001","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.05.001","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.05.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117449","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Revolutionizing Prokaryotic Systematics Through Next-Generation Sequencing 通过下一代测序革新原核生物系统学
4区 生物学
Methods in Microbiology Pub Date : 2014-08-28 DOI: 10.1016/BS.MIM.2014.07.001
V. Sangal, L. Nieminen, N. Tucker, P. Hoskisson
{"title":"Revolutionizing Prokaryotic Systematics Through Next-Generation Sequencing","authors":"V. Sangal, L. Nieminen, N. Tucker, P. Hoskisson","doi":"10.1016/BS.MIM.2014.07.001","DOIUrl":"https://doi.org/10.1016/BS.MIM.2014.07.001","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2014-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2014.07.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117381","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
An introduction to phylogenetics and the tree of life 介绍系统发育和生命之树
4区 生物学
Methods in Microbiology Pub Date : 2014-01-01 DOI: 10.1016/BS.MIM.2014.05.001
Thomas Williams, S. Heaps
{"title":"An introduction to phylogenetics and the tree of life","authors":"Thomas Williams, S. Heaps","doi":"10.1016/BS.MIM.2014.05.001","DOIUrl":"https://doi.org/10.1016/BS.MIM.2014.05.001","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2014-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2014.05.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117361","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Chapter 8 – Identification of Conserved Indels that are Useful for Classification and Evolutionary Studies 第八章-对分类和进化研究有用的保守基因的鉴定
4区 生物学
Methods in Microbiology Pub Date : 2014-01-01 DOI: 10.1016/BS.MIM.2014.05.003
Radhey S. Gupta
{"title":"Chapter 8 – Identification of Conserved Indels that are Useful for Classification and Evolutionary Studies","authors":"Radhey S. Gupta","doi":"10.1016/BS.MIM.2014.05.003","DOIUrl":"https://doi.org/10.1016/BS.MIM.2014.05.003","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2014-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2014.05.003","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117365","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 53
Chapter 9 - Reconciliation Approaches to Determining HGT, Duplications, and Losses in Gene Trees 第九章-确定基因树中HGT、重复和损失的调和方法
4区 生物学
Methods in Microbiology Pub Date : 2014-01-01 DOI: 10.1016/BS.MIM.2014.08.004
O. Kamneva, N. Ward
{"title":"Chapter 9 - Reconciliation Approaches to Determining HGT, Duplications, and Losses in Gene Trees","authors":"O. Kamneva, N. Ward","doi":"10.1016/BS.MIM.2014.08.004","DOIUrl":"https://doi.org/10.1016/BS.MIM.2014.08.004","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2014-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2014.08.004","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 16
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