{"title":"Index","authors":"","doi":"10.1016/S0580-9517(15)00029-X","DOIUrl":"https://doi.org/10.1016/S0580-9517(15)00029-X","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/S0580-9517(15)00029-X","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"56250884","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Next-Generation Sequencing for Pathogen Detection and Identification","authors":"K. Frey, K. Bishop-Lilly","doi":"10.1016/BS.MIM.2015.06.004","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.06.004","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.06.004","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117646","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Gene Amplification and Sequencing for Bacterial Identification","authors":"S. Lau, J. L. Teng, Chi-chun Ho, P. Woo","doi":"10.1016/BS.MIM.2015.04.003","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.04.003","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.04.003","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117881","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Total Laboratory Automation in Clinical Bacteriology","authors":"S. Novak-Weekley, E. Marlowe","doi":"10.1016/BS.MIM.2015.09.002","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.09.002","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.09.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117890","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Host-Based Diagnostics for Detection and Prognosis of Infectious Diseases","authors":"William E. Yang, C. Woods, E. Tsalik","doi":"10.1016/BS.MIM.2015.06.001","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.06.001","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.06.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117527","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Chapter 8 - Technical and Software Advances in Bacterial Pathogen Typing","authors":"L. Chui, V. Li","doi":"10.1016/BS.MIM.2015.06.003","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.06.003","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.06.003","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117622","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Methods in MicrobiologyPub Date : 2015-01-01Epub Date: 2015-08-03DOI: 10.1016/bs.mim.2015.06.002
Jude Heaney, Kathryn Rolfe, Nicholas S Gleadall, Jane S Greatorex, Martin D Curran
{"title":"Low-Density TaqMan® Array Cards for the Detection of Pathogens.","authors":"Jude Heaney, Kathryn Rolfe, Nicholas S Gleadall, Jane S Greatorex, Martin D Curran","doi":"10.1016/bs.mim.2015.06.002","DOIUrl":"10.1016/bs.mim.2015.06.002","url":null,"abstract":"<p><p>Real-time PCR assays have revolutionised diagnostic microbiology over the past 15 years or more. Adaptations and improvements over that time frame have led to the development of multiplex assays. However, limitations in terms of available fluorophores has meant the number of assays which can be combined has remained in single figures. This latter limitation has led to the focus tending to be on individual pathogens and their detection. This chapter describes the development of TaqMan® Array Cards (TACs), technology which allows the detection of multiple pathogens (up to 48 targets) from a single nucleic acid extract, utilising small volumes and real-time PCR. This in turn lends itself to a syndromic approach to infectious disease diagnosis. Using the examples of TACs we have developed in our own laboratory, as well as others, we explain the design, optimisation and use of TACs for respiratory, gastrointestinal and liver infections. Refinement of individual assays is discussed as well as the incorporation of appropriate internal and process controls onto the array cards. Finally, specific examples are given of instances where the assays have had a direct, positive impact on patient care.</p>","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7172410/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"MALDI-TOF Mass Spectrometry in the Clinical Microbiology Laboratory; Beyond Identification","authors":"S. Schubert, M. Kostrzewa","doi":"10.1016/BS.MIM.2015.04.004","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.04.004","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.04.004","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117407","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Invasive Fungal Infections and Approaches to Their Diagnosis","authors":"M. Pfaller","doi":"10.1016/BS.MIM.2015.05.002","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.05.002","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.05.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117487","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Molecular Strain Typing and Characterisation of Toxigenic Clostridium difficile","authors":"T. Dingle, D. MacCannell","doi":"10.1016/BS.MIM.2015.07.001","DOIUrl":"https://doi.org/10.1016/BS.MIM.2015.07.001","url":null,"abstract":"","PeriodicalId":49823,"journal":{"name":"Methods in Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/BS.MIM.2015.07.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54117680","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}