Molecular and Cellular Probes最新文献

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Interrelationship of hemoglobin A1c level lipid profile, uric acid, C-reactive protein levels and age in a large hospital database 大型医院数据库中血红蛋白A1c水平、血脂、尿酸、C反应蛋白水平与年龄的相关性。
IF 3.3 3区 生物学
Molecular and Cellular Probes Pub Date : 2023-09-20 DOI: 10.1016/j.mcp.2023.101933
Dlovan Ali Jalal , Barna Vásárhelyi , Béla Blaha , Zoltán Tóth , Tamás Géza Szabó , Béla Gyarmati
{"title":"Interrelationship of hemoglobin A1c level lipid profile, uric acid, C-reactive protein levels and age in a large hospital database","authors":"Dlovan Ali Jalal ,&nbsp;Barna Vásárhelyi ,&nbsp;Béla Blaha ,&nbsp;Zoltán Tóth ,&nbsp;Tamás Géza Szabó ,&nbsp;Béla Gyarmati","doi":"10.1016/j.mcp.2023.101933","DOIUrl":"10.1016/j.mcp.2023.101933","url":null,"abstract":"<div><h3>Introduction</h3><p>Hemoglobin A1c (HbA1c) is used to monitor glucose homeostasis and to identify risk for diabetes. As diabetic patients are frequently present with dyslipidaemia, low-grade inflammation and hyperuricemia, we tested whether HbA1c levels can be estimated having the information about lipid profile, uric acid (UA) and C-reactive protein (CRP) levels. We developed formulas to describe the association of these parameters with HbA1c levels.</p></div><div><h3>Methods</h3><p>Data of 9599 male and 10,817 female patients, measured between 2008 and 2018, were analysed. Patients represented a general hospital patient population with overrepresentation of those with elevated HbA1c over 5.6%. The impact of gender, age, CRP, lipid profile and UA levels on HbA1c % on HbA1c levels was tested with multiple linear regression model. The magnitude of effects of individual factors was used to develop formulas to describe the association between HbA1c and other cardiometabolic parameters. With these formulas we estimated median HbA1c values in each age in both gender and compared them to measured HbA1c levels.</p></div><div><h3>Results</h3><p>The developed formulas are as follow: HbA1c (estimated) in women = 0.752 + 0.237*log10(HDL/cholesterol) + 0.156*log10 (cholesterol) + 0.077*log10 (triglyceride) + 0.025*log10(CRP) +0.001*log10 (age) −0.026*log10(HDL/LDL) −0.063*log10 (uric acid)-0.075*log10 (LDL)-0.199*log10(HDL); HbA1c (estimated) in men = 1.146 + 0.08*log10 (triglyceride) + 0.046*log10(CRP) + 0.01*log10 (cholesterol) + 0.001*log10 (age) −0.014*log10(HDL)-0.018*log10(HDL/LDL)-0.025*log10(HDL/cholesterol) −0.068*log10 (LDL)-0.159*log10 (uric acid)</p><p>Between 20 and 70 years of age, estimated HbA1c matched perfectly to measured HbA1c in.</p></div><div><h3>Conclusion</h3><p>At population level, HbA1c levels can be estimated almost exactly based on lipid profile, CRP and uric acid levels in female patients between 20 and 70 years.</p></div>","PeriodicalId":49799,"journal":{"name":"Molecular and Cellular Probes","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2023-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10309419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Current landscape of miRNAs and TGF‐β signaling in lung cancer progression and therapeutic targets miRNAs和TGF-β信号在癌症进展和治疗靶点中的现状
IF 3.3 3区 生物学
Molecular and Cellular Probes Pub Date : 2023-09-15 DOI: 10.1016/j.mcp.2023.101929
Bashdar Mahmud Hussen , Safeen Jasim Saleem , Snur Rasool Abdullah , Sayran Mohamadtahr , Hazha Jamal Hidayat , Mohammed Fatih Rasul , Mohammad Taheri , Arda Kiani
{"title":"Current landscape of miRNAs and TGF‐β signaling in lung cancer progression and therapeutic targets","authors":"Bashdar Mahmud Hussen ,&nbsp;Safeen Jasim Saleem ,&nbsp;Snur Rasool Abdullah ,&nbsp;Sayran Mohamadtahr ,&nbsp;Hazha Jamal Hidayat ,&nbsp;Mohammed Fatih Rasul ,&nbsp;Mohammad Taheri ,&nbsp;Arda Kiani","doi":"10.1016/j.mcp.2023.101929","DOIUrl":"10.1016/j.mcp.2023.101929","url":null,"abstract":"<div><p>Lung cancer (LC) is the primary reason for cancer-associated fatalities globally. Due to both tumor-suppressing and tumor-promoting activities, the TGF-β family of growth factors is extremely essential to tumorigenesis. A non-coding single-stranded short RNA called microRNA (miRNA), which is made up of about 22 nt and is encoded by endogenous genes, can control normal and pathological pathways in various kinds of cancer, including LC. Recent research demonstrated that the TGF-β signaling directly can affect the synthesis of miRNAs through suppressor of mothers against decapentaplegic (SMAD)-dependent activity or other unidentified pathways, which could generate allostatic feedback as a result of TGF-β signaling stimulation and ultimately affect the destiny of cancer tissues. In this review, we emphasize the critical functions of miRNAs in lung cancer progression and, more critically, how they affect the TGF-β signaling pathway, and explore the role of both the TGF-β signaling pathway and miRNAs as potential therapeutic targets for improving the treatments of LC patients.</p></div>","PeriodicalId":49799,"journal":{"name":"Molecular and Cellular Probes","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2023-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10287200","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Venous thromboembolism-related genetic determinant F11 rs4253417 is a potential prognostic factor in ischaemic stroke 静脉血栓栓塞相关基因决定簇F11 rs4253417是缺血性卒中的潜在预后因素
IF 3.3 3区 生物学
Molecular and Cellular Probes Pub Date : 2023-08-01 DOI: 10.1016/j.mcp.2023.101917
Valéria Tavares , Joana Assis , Ricardo Pinto , Margarida Freitas-Silva , Rui Medeiros
{"title":"Venous thromboembolism-related genetic determinant F11 rs4253417 is a potential prognostic factor in ischaemic stroke","authors":"Valéria Tavares ,&nbsp;Joana Assis ,&nbsp;Ricardo Pinto ,&nbsp;Margarida Freitas-Silva ,&nbsp;Rui Medeiros","doi":"10.1016/j.mcp.2023.101917","DOIUrl":"10.1016/j.mcp.2023.101917","url":null,"abstract":"<div><p>Ischaemic stroke (IS) and venous thromboembolism (VTE) are two forms of thromboembolism that, although distinct, seem to share numerous risk factors. Concerning genetic risk factors, while many VTE genetic markers have been reported, inclusively by genome-wide association studies (GWAS), the identification and validation of genetic determinants underlying IS pathogenesis have been challenging. Considering that IS and VTE shared biological pathways and aetiological factors, the severity of IS might be also influenced by VTE-related genetic variants. Thus, the present study was designed to analyse the impact of six VTE GWAS-identified genetic variants on the clinical outcome of 363 acute IS patients. Results revealed that the single-nucleotide polymorphism (SNP) <em>F11</em> rs4253417 was an independent predictor of the 5-year risk of death among patients with total anterior circulation infarct (TACI). Namely, the ones carrying the SNP C allele presented a fourfold increase in the 5-year risk of death compared to TT genotype carriers (CC/CT vs. TT; adjusted HR, 4.240; 95% CI, 1.260–14.270; <em>P</em> = 0.020). This SNP is known to be associated with coagulation factor XI (FXI) levels, thus with implications in haemostasis and inflammation. As such, <em>F11</em> rs4253417 might be a promising prognostic biomarker among TACI patients to aid in clinical decision-making. However, additional investigation is required to confirm the study's results and dissect the underlying mechanisms.</p></div>","PeriodicalId":49799,"journal":{"name":"Molecular and Cellular Probes","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9803078","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Evaluation of the expression level of some coding and non-coding genes in oral squamous cell carcinoma 口腔鳞状细胞癌中某些编码和非编码基因表达水平的评价
IF 3.3 3区 生物学
Molecular and Cellular Probes Pub Date : 2023-08-01 DOI: 10.1016/j.mcp.2023.101916
Mohadeseh Ajorlou , Parisa Bina-Jourshari , Sepideh Mirzaei , Mazaher Maghsoudloo , Mehrdad Hashemi , Neda Mousavi-Niri , Maliheh Entezari
{"title":"Evaluation of the expression level of some coding and non-coding genes in oral squamous cell carcinoma","authors":"Mohadeseh Ajorlou ,&nbsp;Parisa Bina-Jourshari ,&nbsp;Sepideh Mirzaei ,&nbsp;Mazaher Maghsoudloo ,&nbsp;Mehrdad Hashemi ,&nbsp;Neda Mousavi-Niri ,&nbsp;Maliheh Entezari","doi":"10.1016/j.mcp.2023.101916","DOIUrl":"10.1016/j.mcp.2023.101916","url":null,"abstract":"<div><h3>Introduction</h3><p>Oral squamous cell carcinoma (OSCC) is the most common cancers arising from the head and neck region. There is growing evidence that lncRNAs play an important role in OSCC progression. The study aims to investigate correlations between the expression levels of LncRNAs of PARROT, MYCNUT, DANCR, and KTN1-AS1 with clinicopathological characteristics and finding suitable biomarkers for OSCC.</p></div><div><h3>Material and method</h3><p><em>Total lncRNAs related to cancers and HNSC trascriptomics data were downloaded from lncRNADisease v2.0 database and xenabrowser, respectively. Then, ACO was perfomed on shared of LncRNAs between two databases. Finally, some lncRNAs were proposed as potential biomarkers.</em></p><p>Thirty biopsies samples from patients with the OSCC and 30 healthy subjects were collected by the surgery. Questionnaires including clinical and demographic data were filled for all cases. Using Real-time PCR, the expression levels of PARROT, MYCNUT, DANCR, and KTN1-AS1 lncRNAs were quantified.</p></div><div><h3>Result</h3><p>According to the results,17 <em>novel gene symbol was identified</em>.All the candidate lncRNAs the expression levels of PARROT, MYCNUT, DANCR, and KTN1-AS1 were remarkably upregulated in OSCC tumors in comparison with control group (RQ: 10.00 (<em>P</em> &lt; 0.0001), RQ: 2.920 (<em>P</em> &lt; 0.0001), RQ: 1.623 (<em>P</em> = 0.002), and 4.467 (<em>P</em> &lt; 0.0001), respectively). Also, we found significant associations between tumor lncRNAs expression of PARRPT and DANCER and tumor metastasis (<em>P</em> = 0.009, and <em>P</em> = 0.005, respectively). Additionally, lncRNA KTN1-AS1 expression level was significantly higher in the patients with tumor size more than 3 cm, in comparison with tumor less than 3 cm (<em>P</em> = 0.005). According ROC analysis, all these candidate lncRNAs can be a significant predictor for OSCC (AUC of PARROT lncRNA = 69.72%, AUC of MYCNUT = 98.22%, AUC of DANCR = 74.83%, and AUC of KTN1-AS1 = 99.22%).</p></div><div><h3>Conclusion</h3><p>we found that overexpression levels of PARROT, MYCNUT, DANCR, and KTN1-AS1 lncRNAs were correlated with poor clinicopathological characteristics in patients with OSCC. Also, PARROT, MYCNUT, DANCR, and KTN1-AS1 are novel biomarker for the detection of OSCC.</p></div>","PeriodicalId":49799,"journal":{"name":"Molecular and Cellular Probes","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10176037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Variable fragment length allele-specific polymerase chain reaction (VFLASP), a method for simple and reliable genotyping 可变片段长度等位基因特异性聚合酶链式反应(VFLASP),一种简单可靠的基因分型方法
IF 3.3 3区 生物学
Molecular and Cellular Probes Pub Date : 2023-06-01 DOI: 10.1016/j.mcp.2023.101910
Tamás Tóth, Ákos Csaba, Attila Bokor, Nándor Ács
{"title":"Variable fragment length allele-specific polymerase chain reaction (VFLASP), a method for simple and reliable genotyping","authors":"Tamás Tóth,&nbsp;Ákos Csaba,&nbsp;Attila Bokor,&nbsp;Nándor Ács","doi":"10.1016/j.mcp.2023.101910","DOIUrl":"10.1016/j.mcp.2023.101910","url":null,"abstract":"<div><p>Single-nucleotide polymorphism (SNP) is a substitution of a single nucleotide at a specific position in the genome. Until now, 585 million SNPs have been identified in the human genome, and therefore, a widely applicable method is desirable to detect a specific SNP. Herein we report a simple and reliable genotyping assay, which seems to be suitable for medium and small size laboratories, as well, to easily genotype most of the SNPs. In our study, all of the possible base variations (A-T, A-G, A-C, T-G, T-C, G-C) were tested to prove the general feasibility of our technique. The basis of the assay is a fluorescent PCR, in which both allele-specific primers, differing only at the 3′ end according to the sequence of the SNP, were present, and the length of one of them was modified with 3 bp by adding an adapter sequence to the 5’ end of that primer. The competitive presence of both allele-specific primers excludes the false amplification of the absent allele (which can happen in simple allele-specific PCR (AS-PCR)) and ensures the amplification of the proper allele(s). Unlike other complicated genotyping methods that use of manipulation of fluorescent dyes for genotyping, we apply an approach based on the length of amplicons from different alleles to differentiate between them. In our experiment (named variable fragment length allele-specific polymerase chain reaction (VFLASP)), the investigated six SNPs, containing the six available base variations, gave clear and reliable results after detecting the amplicons by capillary electrophoresis.</p></div>","PeriodicalId":49799,"journal":{"name":"Molecular and Cellular Probes","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9493836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Small peptide LINC00511-133aa encoded by LINC00511 regulates breast cancer cell invasion and stemness through the Wnt/β-catenin pathway LINC00511编码的小肽LINC00511-133aa通过Wnt/β-catenin途径调节乳腺癌症细胞侵袭和干燥
IF 3.3 3区 生物学
Molecular and Cellular Probes Pub Date : 2023-06-01 DOI: 10.1016/j.mcp.2023.101913
Zhongqiu Tan , Lifeng Zhao , Shiqing Huang , Qiulan Jiang , Yantao Wei , Junyun Long Wu , Zhiwen Zhang , Yepeng Li
{"title":"Small peptide LINC00511-133aa encoded by LINC00511 regulates breast cancer cell invasion and stemness through the Wnt/β-catenin pathway","authors":"Zhongqiu Tan ,&nbsp;Lifeng Zhao ,&nbsp;Shiqing Huang ,&nbsp;Qiulan Jiang ,&nbsp;Yantao Wei ,&nbsp;Junyun Long Wu ,&nbsp;Zhiwen Zhang ,&nbsp;Yepeng Li","doi":"10.1016/j.mcp.2023.101913","DOIUrl":"10.1016/j.mcp.2023.101913","url":null,"abstract":"<div><p>LINC00511 is an long non-coding RNA (lncRNA) of ncRNAs,This study aimed to investigate whether the lncRNA LINC00511 could encode a small peptide, LINC00511-133aa, and whether this peptide could promote breast cancer cell metastasis and stemness by activating the wnt/β-catenin pathway. The LINC00511-133aa coding sequence vector and control vector were transfected into MCF-7 and MDA-MB-231 breast cancer cells, with subsequent assessment of peptide expression using PCR, western blotting, and immunofluorescence assays. Cell proliferation, invasion, and apoptosis were evaluated using CCK8, apoptotic, wound healing, and transwell invasion assays, while the characteristic changes of tumor stem cells were detected through sphere-forming assay and western blot analyses of the stemness markers Oct4, Nanog, and SOX2. Results showed that LINC00511-133aa was indeed encoded by LINC00511 and promoted the invasiveness and stemness of breast cancer cells while limiting apoptosis by modulating the expression levels of wnt/β-catenin pathway-related proteins Bax, c-myc, and CyclinD1, as well as facilitating β-catenin protein entry into the nucleus. This study provides evidence for the potential involvement of lncRNA LINC00511 and its peptide product in breast cancer progression via the regulation of the wnt/β-catenin pathway.</p></div>","PeriodicalId":49799,"journal":{"name":"Molecular and Cellular Probes","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9487575","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
TRAF7 inhibits glycolysis to potentiate growth inhibition and apoptosis of myeloid leukemia cells via regulating the KLF2-PFKFB3 axis TRAF7通过调节KLF2-PFKFB3轴抑制糖酵解增强髓系白血病细胞的生长抑制和凋亡
IF 3.3 3区 生物学
Molecular and Cellular Probes Pub Date : 2023-06-01 DOI: 10.1016/j.mcp.2023.101911
Lin Zou, Ye Fang, Wei He
{"title":"TRAF7 inhibits glycolysis to potentiate growth inhibition and apoptosis of myeloid leukemia cells via regulating the KLF2-PFKFB3 axis","authors":"Lin Zou,&nbsp;Ye Fang,&nbsp;Wei He","doi":"10.1016/j.mcp.2023.101911","DOIUrl":"10.1016/j.mcp.2023.101911","url":null,"abstract":"<div><p>Tumor necrosis factor receptor-related factor 7 (TRAF7) can regulate cell differentiation and apoptosis, but its specific functional mechanism in the pathological process of acute myeloid leukemia (AML) closely related to differentiation and apoptosis disorders is largely unclear. In this study, TRAF7 was found to be lowly expressed in AML patients and a variety of myeloid leukemia cells. TRAF7 was overexpressed in AML Molm-13 and chronic myeloid leukemia (CML) K562 cells by transfection with pcDNA3.1-TRAF7. CCK-8 assay and flow cytometry analysis showed that TRAF7 overexpression induced growth inhibition and apoptosis in K562 and Molm-13 cells. Measurements of glucose and lactate suggested that TRAF7 overexpression impaired glycolysis of K562 and Molm-13 cells. Cell cycle analysis indicated that most of K562 and Molm-13 cells were captured in G0/G1 phase by TRAF7 overexpression. PCR and western blot assay revealed that TRAF7 increased Kruppel-like factor 2 (KLF2) expression but decreased 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (PFKFB3) expression in AML cells. KLF2 knockdown can counteract TRAF7-triggered PFKFB3 inhibition, and abolish TRAF7-mediated glycolysis inhibition and cell cycle arrest. KLF2 knockdown or PFKFB3 overexpression both can partially neutralize TRAF7-induced growth inhibition and apoptosis of K562 and Molm-13 cells. Moreover, Lv-TRAF7 decreased human CD45<sup>+</sup> cells in mouse peripheral blood in the xenograft mice established by NOD/SCID mice. Taken together, TRAF7 exerts anti-leukemia effects by impairing glycolysis and cell cycle progression of myeloid leukemia cells via modulating the KLF2-PFKFB3 axis.</p></div>","PeriodicalId":49799,"journal":{"name":"Molecular and Cellular Probes","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9493835","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of the immune checkpoint factors in idiopathic membranous nephropathy 免疫检查点因子在特发性膜性肾病中的评价
IF 3.3 3区 生物学
Molecular and Cellular Probes Pub Date : 2023-06-01 DOI: 10.1016/j.mcp.2023.101914
Roza Motavalli , Maryam Hosseini , Mohammad Sadegh Soltani-Zangbar , Abbas Karimi , Mohammadreza Sadeghi , Sanam Dolati , Mehdi Yousefi , Jalal Etemadi
{"title":"Evaluation of the immune checkpoint factors in idiopathic membranous nephropathy","authors":"Roza Motavalli ,&nbsp;Maryam Hosseini ,&nbsp;Mohammad Sadegh Soltani-Zangbar ,&nbsp;Abbas Karimi ,&nbsp;Mohammadreza Sadeghi ,&nbsp;Sanam Dolati ,&nbsp;Mehdi Yousefi ,&nbsp;Jalal Etemadi","doi":"10.1016/j.mcp.2023.101914","DOIUrl":"10.1016/j.mcp.2023.101914","url":null,"abstract":"<div><p>Idiopathic membranous nephropathy (IMN), a single-organ autoimmune disease, is recognized by autoantibodies to podocyte proteins and identified as the most frequent cause of nephrotic syndrome in adults. T cells are important contributors in autoimmunity since they promote B–cell development, antibody production, direct inflammation, and organ tissue cytotoxicity. This study investigated the inhibitory immune checkpoint (ICP) receptors expressed on T lymphocytes and other immune cells. Thus, PBMCs from IMN patients were obtained before treatment, and the levels of ICPs such as programmed cell death protein 1 (PD-1), cytotoxic T-lymphocyte-associated protein 4 (CTLA4), lymphocyte activation gene-3 (LAG-3), and T cell immunoglobulin-3 (TIM-3) were examined at both gene and protein expression using real time PCR and Western blot tests respectively. The results illustrated that gene expression levels of ICPs reduced significantly in comparison to the control which were verified by related fold changes of protein expression sequentially. Our study revealed that CTLA-4, PD-1, TIM-3, and LAG-3 expression is impaired in IMN patients before treatment which could be a potential target for therapy.</p></div>","PeriodicalId":49799,"journal":{"name":"Molecular and Cellular Probes","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9499249","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Significance of microRNA-targeted ErbB signaling pathway genes in cardiomyocyte differentiation 微小RNA靶向ErbB信号通路基因在心肌细胞分化中的意义
IF 3.3 3区 生物学
Molecular and Cellular Probes Pub Date : 2023-06-01 DOI: 10.1016/j.mcp.2023.101912
Akram Gholipour , Ali Zahedmehr , Farshad Shakerian , Shiva Irani , Maziar Oveisee , Seyed Javad Mowla , Mahshid Malakootian
{"title":"Significance of microRNA-targeted ErbB signaling pathway genes in cardiomyocyte differentiation","authors":"Akram Gholipour ,&nbsp;Ali Zahedmehr ,&nbsp;Farshad Shakerian ,&nbsp;Shiva Irani ,&nbsp;Maziar Oveisee ,&nbsp;Seyed Javad Mowla ,&nbsp;Mahshid Malakootian","doi":"10.1016/j.mcp.2023.101912","DOIUrl":"10.1016/j.mcp.2023.101912","url":null,"abstract":"<div><h3>Objective(s)</h3><p>Cardiomyocyte differentiation is a complex process that follows the progression of gene expression alterations. The ErbB signaling pathway is necessary for various stages of cardiac development. We aimed to identify potential microRNAs targeting the ErbB signaling pathway genes by <em>in silico</em> approaches.</p></div><div><h3>Methods</h3><p>Small RNA-sequencing data were obtained from GSE108021 for cardiomyocyte differentiation. Differentially expressed miRNAs were acquired via the DESeq2 package. Signaling pathways and gene ontology processes for the identified miRNAs were determined and the targeted genes of those miRNAs affecting the ErbB signaling pathway were determined.</p></div><div><h3>Results</h3><p>Results revealed highly differentially expressed miRNAs were common between the differentiation stages and they targeted the genes involved in the ErbB signaling pathway as follows: let-7g-5p targets both <em>CDKN1A</em> and <em>NRAS</em>, while let-7c-5p and let-7d-5p hit <em>CDKN1A</em> and <em>NRAS</em> exclusively<em>.</em> let-7 family members targeted <em>MAPK8</em> and <em>ABL2. GSK3B</em> was targeted by miR-199a-5p and miR-214-3p, and <em>ERBB4</em> was targeted by miR-199b-3p and miR-653-5p. miR-214-3p, miR-199b-3p, miR-1277-5p, miR-21-5p, and miR-21-3p targeted <em>CBL</em>, <em>mTOR</em>, <em>Jun</em>, <em>JNKK</em>, and <em>GRB1</em>, respectively. <em>MAPK8</em> was targeted by miR-214-3p, and <em>ABL2</em> was targeted by miR-125b-5p and miR-1277-5p, too.</p></div><div><h3>Conclusion</h3><p>We determined miRNAs and their target genes in the ErbB signaling pathway in cardiomyocyte development and consequently heart pathophysiology progression.</p></div>","PeriodicalId":49799,"journal":{"name":"Molecular and Cellular Probes","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9494273","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring the role of FBXO5 in gastric cancer FBXO5在癌症中的作用探讨
IF 3.3 3区 生物学
Molecular and Cellular Probes Pub Date : 2023-06-01 DOI: 10.1016/j.mcp.2023.101915
Junchang Zhang , Gengyuan Zhang , Keshen Wang , Feng Cui, Hanteng Yang, Zuoyi Jiao
{"title":"Exploring the role of FBXO5 in gastric cancer","authors":"Junchang Zhang ,&nbsp;Gengyuan Zhang ,&nbsp;Keshen Wang ,&nbsp;Feng Cui,&nbsp;Hanteng Yang,&nbsp;Zuoyi Jiao","doi":"10.1016/j.mcp.2023.101915","DOIUrl":"10.1016/j.mcp.2023.101915","url":null,"abstract":"<div><p>Gastric cancer is one of the most common lethal malignancies in the world, especially in China. Due to the ineffective screening of early gastric cancer and drug resistance of the advanced, the prognosis of gastric cancer remains dismal. Based on bioinformatics and tissue microarray analyses, FBXO5 was selected for analysis in this study. Here, we report the function of FBXO5 in gastric cancer, showing for the first time that it contributes to tumor cell proliferation, clone formation, invasion and migration. In these preliminary findings, FBXO5 promoted the transition of the cell cycle from the G0/G1 to the G2/M phase, which likely resulted from FBXO5 interacting with CDK1 and NCAPG proteins. The relevant mechanism needs to be explored. In addition, FBXO5 participated in the tumor microenvironment and was negatively related to immune activation. FBXO5, an oncogene, plays a role in tumor initiation and progression, and is expected to be a potential target for gastric cancer treatment.</p></div>","PeriodicalId":49799,"journal":{"name":"Molecular and Cellular Probes","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9495265","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
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