Health Information Science and Systems最新文献

{"title":"LCRNet: local cross-channel recalibration network for liver cancer classification based on CT images","authors":"Qiang Fang, Yue Yang, Hao Wang, Hanxi Sun, Jiangming Chen, Zixiang Chen, Tian Pu, Xiaoqing Zhang, Fubao Liu","doi":"10.1007/s13755-023-00263-6","DOIUrl":"https://doi.org/10.1007/s13755-023-00263-6","url":null,"abstract":"","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"10 1","pages":""},"PeriodicalIF":6.0,"publicationDate":"2023-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138584471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Self-supervised neural network-based endoscopic monocular 3D reconstruction method","authors":"Ziming Zhang, Wenjun Tan, Yuhang Sun, Juntao Han, Zhe Wang, Hongsheng Xue, Ruoyu Wang","doi":"10.1007/s13755-023-00262-7","DOIUrl":"https://doi.org/10.1007/s13755-023-00262-7","url":null,"abstract":"","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"4 8","pages":""},"PeriodicalIF":6.0,"publicationDate":"2023-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138584265","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"CLAD-Net: cross-layer aggregation attention network for real-time endoscopic instrument detection.","authors":"Xiushun Zhao, Jing Guo, Zhaoshui He, Xiaobing Jiang, Haifang Lou, Depei Li","doi":"10.1007/s13755-023-00260-9","DOIUrl":"10.1007/s13755-023-00260-9","url":null,"abstract":"<p><p>As medical treatments continue to advance rapidly, minimally invasive surgery (MIS) has found extensive applications across various clinical procedures. Accurate identification of medical instruments plays a vital role in comprehending surgical situations and facilitating endoscopic image-guided surgical procedures. However, the endoscopic instrument detection poses a great challenge owing to the narrow operating space, with various interfering factors (e.g. smoke, blood, body fluids) and inevitable issues (e.g. mirror reflection, visual obstruction, illumination variation) in the surgery. To promote surgical efficiency and safety in MIS, this paper proposes a cross-layer aggregated attention detection network (CLAD-Net) for accurate and real-time detection of endoscopic instruments in complex surgical scenarios. We propose a cross-layer aggregation attention module to enhance the fusion of features and raise the effectiveness of lateral propagation of feature information. We propose a composite attention mechanism (CAM) to extract contextual information at different scales and model the importance of each channel in the feature map, mitigate the information loss due to feature fusion, and effectively solve the problem of inconsistent target size and low contrast in complex contexts. Moreover, the proposed feature refinement module (RM) enhances the network's ability to extract target edge and detail information by adaptively adjusting the feature weights to fuse different layers of features. The performance of CLAD-Net was evaluated using a public laparoscopic dataset Cholec80 and another set of neuroendoscopic dataset from Sun Yat-sen University Cancer Center. From both datasets and comparisons, CLAD-Net achieves the <math><mrow><mi>A</mi><msub><mi>P</mi><mrow><mn>0.5</mn></mrow></msub></mrow></math> of 98.9% and 98.6%, respectively, that is better than advanced detection networks. A video for the real-time detection is presented in the following link: https://github.com/A0268/video-demo.</p>","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"11 1","pages":"58"},"PeriodicalIF":6.0,"publicationDate":"2023-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10678866/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138463415","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Multi-omics prognostic signatures of IPO11 mRNA expression and clinical outcomes in colorectal cancer using bioinformatics approaches.","authors":"Mohammed Othman Aljahdali, Mohammad Habibur Rahman Molla","doi":"10.1007/s13755-023-00259-2","DOIUrl":"10.1007/s13755-023-00259-2","url":null,"abstract":"<p><p>The most prevalent malignant illness of the gastrointestinal system, colorectal cancer, is the third most prevalent cancer in males and the second most prevalent cancer in women. Importin-11 is a protein that acts as a regulator of cancer cell proliferation in colorectal tumours by conveying <math><mi>β</mi></math>-catenin to the cell nucleus. However, the IPO11 gene was found to encode a protein called Importin-11, which functions as a nucleus importer for the cell. As a result, preventing <math><mi>β</mi></math>-catenin from entering the nucleus requires blocking Importin-11. As a result, we conducted a multi-omics investigation to assess IPO11 gene potential as a therapeutic biomarker for human colorectal cancer (CC). Oncomine, GEPIA2, immunohisto-chemistry, and UALCAN databases were used to analyses the mRNA expression profiles of IPO11 in CC. The investigation has yielded clear evidence of the increase of IPO11 expression in CC subtypes, as indicated by the data acquired. Analysing CC research from the cBioPortal database, the study discovered three new missense mutations in the importin-11 protein sequence at a frequency of 0.00-1.50% copy number changes. Additionally, the Kaplan-Meier plots demonstrated a strong connection concerning IPO11 downregulation and a poorer CC patient survival rate. The co-expressed gene profile of IPO11 was likewise associated with the onset of CC. IPO11 co-expressed gene profile was also linked to CC development. Moreover, the correlation analysis using bc-GenExMiner and the UCSC Xena server identified KIF2A as the most positively co-expressed gene. The study found that KIF2A and its co-expressed genes were involved in a wide variety of cancer progression pathways using the Enrichr database. Cumulatively, this result will not only provide new information about the expression of IPO11 associated with CC progression and patient survival, but could also serve as a therapeutic biomarker for treating CC in a significant and worthwhile manner.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s13755-023-00259-2.</p>","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"11 1","pages":"57"},"PeriodicalIF":6.0,"publicationDate":"2023-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10678892/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138463416","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Automated lead toxicity prediction using computational modelling framework.","authors":"Priyanka Chaurasia, Sally I McClean, Abbas Ali Mahdi, Pratheepan Yogarajah, Jamal Akhtar Ansari, Shipra Kunwar, Mohammad Kaleem Ahmad","doi":"10.1007/s13755-023-00257-4","DOIUrl":"10.1007/s13755-023-00257-4","url":null,"abstract":"<p><strong>Background: </strong>Lead, an environmental toxicant, accounts for 0.6% of the global burden of disease, with the highest burden in developing countries. Lead poisoning is very much preventable with adequate and timely action. Therefore, it is important to identify factors that contribute to maternal BLL and minimise them to reduce the transfer to the foetus. Literacy and awareness related to its impact are low and the clinical establishment for biological monitoring of blood lead level (BLL) is low, costly, and time-consuming. A significant contribution to an infant's BLL load is caused by maternal lead transfer during pregnancy. This acts as the first pathway to the infant's lead exposure. The social and demographic information that includes lifestyle and environmental factors are key to maternal lead exposure.</p><p><strong>Results: </strong>We propose a novel approach to build a computational model framework that can predict lead toxicity levels in maternal blood using a set of sociodemographic features. To illustrate our proposed approach, maternal data comprising socio-demographic features and blood samples from the pregnant woman is collected, analysed, and modelled. The computational model is built that learns from the maternal data and then predicts lead level in a pregnant woman using a set of questionnaires that relate to the maternal's social and demographic information as the first point of testing. The range of features identified in the built models can estimate the underlying function and provide an understanding of the toxicity level. Following feature selection methods, the 12-feature set obtained from the Boruta algorithm gave better prediction results (<i>k</i>NN = 76.84%, DT = 74.70%, and NN = 73.99%).</p><p><strong>Conclusion: </strong>The built prediction model can be beneficial in improving the point of care and hence reducing the cost and the risk involved. It is envisaged that in future, the proposed methodology will become a part of a screening process to assist healthcare experts at the point of evaluating the lead toxicity level in pregnant women. Women screened positive could be given a range of facilities including preliminary counselling to being referred to the health centre for further diagnosis. Steps could be taken to reduce maternal lead exposure; hence, it could also be possible to mitigate the infant's lead exposure by reducing transfer from the pregnant woman.</p>","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"11 1","pages":"56"},"PeriodicalIF":6.0,"publicationDate":"2023-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10661678/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138463414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Essential proteins discovery based on dominance relationship and neighborhood similarity centrality.","authors":"Gaoshi Li, Xinlong Luo, Zhipeng Hu, Jingli Wu, Wei Peng, Jiafei Liu, Xiaoshu Zhu","doi":"10.1007/s13755-023-00252-9","DOIUrl":"10.1007/s13755-023-00252-9","url":null,"abstract":"<p><p>Essential proteins play a vital role in development and reproduction of cells. The identification of essential proteins helps to understand the basic survival of cells. Due to time-consuming, costly and inefficient with biological experimental methods for discovering essential proteins, computational methods have gained increasing attention. In the initial stage, essential proteins are mainly identified by the centralities based on protein-protein interaction (PPI) networks, which limit their identification rate due to many false positives in PPI networks. In this study, a purified PPI network is firstly introduced to reduce the impact of false positives in the PPI network. Secondly, by analyzing the similarity relationship between a protein and its neighbors in the PPI network, a new centrality called neighborhood similarity centrality (NSC) is proposed. Thirdly, based on the subcellular localization and orthologous data, the protein subcellular localization score and ortholog score are calculated, respectively. Fourthly, by analyzing a large number of methods based on multi-feature fusion, it is found that there is a special relationship among features, which is called dominance relationship, then, a novel model based on dominance relationship is proposed. Finally, NSC, subcellular localization score, and ortholog score are fused by the dominance relationship model, and a new method called NSO is proposed. In order to verify the performance of NSO, the seven representative methods (ION, NCCO, E_POC, SON, JDC, PeC, WDC) are compared on yeast datasets. The experimental results show that the NSO method has higher identification rate than other methods.</p>","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"11 1","pages":"55"},"PeriodicalIF":6.0,"publicationDate":"2023-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654316/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138048172","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Interrelated feature selection from health surveys using domain knowledge graph.","authors":"Markian Jaworsky, Xiaohui Tao, Lei Pan, Shiva Raj Pokhrel, Jianming Yong, Ji Zhang","doi":"10.1007/s13755-023-00254-7","DOIUrl":"10.1007/s13755-023-00254-7","url":null,"abstract":"<p><p>Finding patterns among risk factors and chronic illness can suggest similar causes, provide guidance to improve healthy lifestyles, and give clues for possible treatments for outliers. Prior studies have typically isolated data challenges from single-disease datasets. However, the predictive power of multiple diseases is more helpful in establishing a healthy lifestyle than investigating one disease. Most studies typically focus on single-disease datasets; however, to ensure that health advice is generalized and contemporary, the features that predict the likelihood of many diseases can improve health advice effectiveness when considering the patient's point of view. We construct and present a novel knowledge-based qualitative method to remove redundant features from a dataset and redefine the outliers. The results of our trials upon five annual chronic disease health surveys demonstrate that our Knowledge Graph-based feature selection, when applied to many machine learning and deep learning multi-label classifiers, can improve classification performance. Our methodology is compatible with future directions, such as graph neural networks. It provides clinicians with an efficient process to select the most relevant health survey questions and responses regarding single or many human organ systems.</p>","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"11 1","pages":"54"},"PeriodicalIF":6.0,"publicationDate":"2023-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654272/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138055584","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"EAPR: explainable and augmented patient representation learning for disease prediction","authors":"Jiancheng Zhang, Yonghui Xu, Bicui Ye, Yibowen Zhao, Xiaofang Sun, Qi Meng, Yang Zhang, Lizhen Cui","doi":"10.1007/s13755-023-00256-5","DOIUrl":"https://doi.org/10.1007/s13755-023-00256-5","url":null,"abstract":"","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"33 7","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134954633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"ADHD-KG: a knowledge graph of attention deficit hyperactivity disorder","authors":"Emmanuel Papadakis, George Baryannis, Sotiris Batsakis, Marios Adamou, Zhisheng Huang, Grigoris Antoniou","doi":"10.1007/s13755-023-00253-8","DOIUrl":"https://doi.org/10.1007/s13755-023-00253-8","url":null,"abstract":"Abstract Purpose Attention Deficit Hyperactivity Disorder (ADHD) is a widespread condition that affects human behaviour and can interfere with daily activities and relationships. Medication or medical information about ADHD can be found in several data sources on the Web. Such distribution of knowledge raises notable obstacles since researchers and clinicians must manually combine various sources to deeply explore aspects of ADHD. Knowledge graphs have been widely used in medical applications due to their data integration capabilities, offering rich data stores of information built from heterogeneous sources; however, general purpose knowledge graphs cannot represent knowledge in sufficient detail, thus there is an increasing interest in domain-specific knowledge graphs. Methods In this work we propose a Knowledge Graph of ADHD. In particular, we introduce an automated procedure enabling the construction of a knowledge graph that covers knowledge from a wide range of data sources primarily focusing on adult ADHD. These include relevant literature and clinical trials, prescribed medication and their known side-effects. Data integration between these data sources is accomplished by employing a suite of information linking procedures, which aim to connect resources by relating them to common concepts found in medical thesauri. Results The usability and appropriateness of the developed knowledge graph is evaluated through a series of use cases that illustrate its ability to enhance and accelerate information retrieval. Conclusion The Knowledge Graph of ADHD can provide valuable assistance to researchers and clinicians in the research, training, diagnostic and treatment processes for ADHD.","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"13 16","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135087208","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Liver fibrosis MR images classification based on higher-order interaction and sample distribution rebalancing.","authors":"Ling Zhang, Zhennan Xiao, Wenchao Jiang, Chengbin Luo, Ming Ye, Guanghui Yue, Zhiyuan Chen, Shuman Ouyang, Yupin Liu","doi":"10.1007/s13755-023-00255-6","DOIUrl":"10.1007/s13755-023-00255-6","url":null,"abstract":"<p><p>The fractal features of liver fibrosis MR images exhibit an irregular fragmented distribution, and the diffuse feature distribution lacks interconnectivity, result- ing in incomplete feature learning and poor recognition accuracy. In this paper, we insert recursive gated convolution into the ResNet18 network to introduce spatial information interactions during the feature learning process and extend it to higher orders using recursion. Higher-order spatial information interactions enhance the correlation between features and enable the neural network to focus more on the pixel-level dependencies, enabling a global interpretation of liver MR images. Additionally, the existence of light scattering and quantum noise during the imaging process, coupled with environmental factors such as breathing artifacts caused by long time breath holding, affects the quality of the MR images. To improve the classification performance of the neural network and better cap- ture sample features, we introduce the Adaptive Rebalance loss function and incorporate the feature paradigm as a learnable adaptive attribute into the angular margin auxiliary function. Adaptive Rebalance loss function can expand the inter-class distance and narrow the intra-class difference to further enhance discriminative ability of the model. We conduct extensive experiments on liver fibrosis MR imaging involving 209 patients. The results demonstrate an average improvement of two percent in recognition accuracy compared to ResNet18. The github is at https://github.com/XZN1233/paper.git.</p>","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"11 1","pages":"51"},"PeriodicalIF":6.0,"publicationDate":"2023-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10632346/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89719974","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}