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A study of the COVID-19 epidemic in India using the SEIRD model 基于SEIRD模型的印度COVID-19疫情研究
IF 3.1 4区 生物学
Quantitative Biology Pub Date : 2021-01-01 DOI: 10.15302/j-qb-021-0260
R. Banerjee, S. Bhattacharjee, P. Varadwaj
{"title":"A study of the COVID-19 epidemic in India using the SEIRD model","authors":"R. Banerjee, S. Bhattacharjee, P. Varadwaj","doi":"10.15302/j-qb-021-0260","DOIUrl":"https://doi.org/10.15302/j-qb-021-0260","url":null,"abstract":"Background: The coronavirus pandemic (COVID-19) is causing a havoc globally, exacerbated by the newly discovered SARS-CoV-2 virus. Due to its high population density, India is one of the most badly effected countries from the first wave of COVID-19. Therefore, it is extremely necessary to accurately predict the state-wise and overall dynamics of COVID-19 to get the effective and efficient organization of resources across India. Methods: In this study, the dynamics of COVID-19 in India and several of its selected states with different demographic structures were analyzed using the SEIRD epidemiological model. The basic reproductive ratio R0 was systemically estimated to predict the dynamics of the temporal progression of COVID-19 in India and eight of its states, Andhra Pradesh, Chhattisgarh, Delhi, Gujarat, Madhya Pradesh, Maharashtra, Tamil Nadu, and Uttar Pradesh. Results: For India, the SEIRD model calculations show that the peak of infection is expected to appear around the middle of October, 2020. Furthermore, we compared the model scenario to a Gaussian fit of the daily infected cases and obtained similar results. The early imposition of a nation-wide lockdown has reduced the number of infected cases but delayed the appearance of the infection peak significantly. Conclusion: After comparing our calculations using India's data to the real life dynamics observed in Italy and Russia, we can conclude that the SEIRD model can predict the dynamics of COVID-19 with sufficient accuracy.","PeriodicalId":45660,"journal":{"name":"Quantitative Biology","volume":"31 1","pages":""},"PeriodicalIF":3.1,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67351195","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Erratum to: Identifying miRNA-disease association based on integrating miRNA topological similarity and functional similarity 勘误:基于整合miRNA拓扑相似性和功能相似性来识别miRNA与疾病的关联
IF 3.1 4区 生物学
Quantitative Biology Pub Date : 2020-09-01 DOI: 10.1007/s40484-020-0220-7
Qingfeng Chen, Zhao Zhe, Wei Lan, Ruchang Zhang, Zhiqiang Wang, Cheng Luo, Yi-Ping Phoebe Chen
{"title":"Erratum to: Identifying miRNA-disease association based on integrating miRNA topological similarity and functional similarity","authors":"Qingfeng Chen, Zhao Zhe, Wei Lan, Ruchang Zhang, Zhiqiang Wang, Cheng Luo, Yi-Ping Phoebe Chen","doi":"10.1007/s40484-020-0220-7","DOIUrl":"https://doi.org/10.1007/s40484-020-0220-7","url":null,"abstract":"","PeriodicalId":45660,"journal":{"name":"Quantitative Biology","volume":"8 1","pages":"277"},"PeriodicalIF":3.1,"publicationDate":"2020-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s40484-020-0220-7","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42687707","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The statistical practice of the GTEx Project: from single to multiple tissues GTEx项目的统计实践:从单一组织到多个组织
IF 3.1 4区 生物学
Quantitative Biology Pub Date : 2020-08-06 DOI: 10.1007/s40484-020-0210-9
Xu Liao, Xiaoran Chai, Xingjie Shi, Lin S. Chen, Jin Liu
{"title":"The statistical practice of the GTEx Project: from single to multiple tissues","authors":"Xu Liao, Xiaoran Chai, Xingjie Shi, Lin S. Chen, Jin Liu","doi":"10.1007/s40484-020-0210-9","DOIUrl":"https://doi.org/10.1007/s40484-020-0210-9","url":null,"abstract":"","PeriodicalId":45660,"journal":{"name":"Quantitative Biology","volume":"1 1","pages":"1 - 17"},"PeriodicalIF":3.1,"publicationDate":"2020-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s40484-020-0210-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42372291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Germline genomes have a dominant-heritable contribution to cancer immune evasion and immunotherapy response 生殖系基因组对癌症免疫逃避和免疫治疗反应具有显性遗传贡献
IF 3.1 4区 生物学
Quantitative Biology Pub Date : 2020-07-31 DOI: 10.1007/s40484-020-0212-7
Xue Jiang, Mohammad Asad, Lin Li, Zhanpeng Sun, Jean-Sébastien Milanese, Bo Liao, Edwin Wang
{"title":"Germline genomes have a dominant-heritable contribution to cancer immune evasion and immunotherapy response","authors":"Xue Jiang, Mohammad Asad, Lin Li, Zhanpeng Sun, Jean-Sébastien Milanese, Bo Liao, Edwin Wang","doi":"10.1007/s40484-020-0212-7","DOIUrl":"https://doi.org/10.1007/s40484-020-0212-7","url":null,"abstract":"","PeriodicalId":45660,"journal":{"name":"Quantitative Biology","volume":"1 1","pages":"1 - 12"},"PeriodicalIF":3.1,"publicationDate":"2020-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s40484-020-0212-7","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48750306","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Monitoring and mathematical modeling of mitochondrial ATP in myotubes at single-cell level reveals two distinct population with different kinetics 在单细胞水平上对肌管中线粒体ATP的监测和数学建模揭示了具有不同动力学的两个不同群体
IF 3.1 4区 生物学
Quantitative Biology Pub Date : 2020-07-23 DOI: 10.1007/s40484-020-0211-8
Naoki Matsuda, Ken-ichi Hironaka, Masashi Fujii, Takumi Wada, Katsuyuki Kunida, Haruki Inoue, M. Eto, Daisuke Hoshino, Y. Furuichi, Y. Manabe, N. Fujii, H. Noji, H. Imamura, Shinya Kuroda
{"title":"Monitoring and mathematical modeling of mitochondrial ATP in myotubes at single-cell level reveals two distinct population with different kinetics","authors":"Naoki Matsuda, Ken-ichi Hironaka, Masashi Fujii, Takumi Wada, Katsuyuki Kunida, Haruki Inoue, M. Eto, Daisuke Hoshino, Y. Furuichi, Y. Manabe, N. Fujii, H. Noji, H. Imamura, Shinya Kuroda","doi":"10.1007/s40484-020-0211-8","DOIUrl":"https://doi.org/10.1007/s40484-020-0211-8","url":null,"abstract":"","PeriodicalId":45660,"journal":{"name":"Quantitative Biology","volume":"1 1","pages":"1 - 10"},"PeriodicalIF":3.1,"publicationDate":"2020-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s40484-020-0211-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49412760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Direct-to-consumer genetic testing in China and its role in GWAS discovery and replication 中国直接面向消费者的基因检测及其在GWAS发现和复制中的作用
IF 3.1 4区 生物学
Quantitative Biology Pub Date : 2020-07-18 DOI: 10.1007/s40484-020-0209-2
Kang Kang, Xue-Long Sun, Lizhong Wang, Xiaotian Yao, Senwei Tang, Junjie Deng, Xiaoli Wu, Can Yang, Gang Chen
{"title":"Direct-to-consumer genetic testing in China and its role in GWAS discovery and replication","authors":"Kang Kang, Xue-Long Sun, Lizhong Wang, Xiaotian Yao, Senwei Tang, Junjie Deng, Xiaoli Wu, Can Yang, Gang Chen","doi":"10.1007/s40484-020-0209-2","DOIUrl":"https://doi.org/10.1007/s40484-020-0209-2","url":null,"abstract":"","PeriodicalId":45660,"journal":{"name":"Quantitative Biology","volume":"1 1","pages":"1 - 15"},"PeriodicalIF":3.1,"publicationDate":"2020-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s40484-020-0209-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49242355","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
DNA sequencing using nanopores and kinetic proofreading 利用纳米孔进行DNA测序和动力学校对
IF 3.1 4区 生物学
Quantitative Biology Pub Date : 2020-07-02 DOI: 10.1007/s40484-020-0201-x
X. Ling
{"title":"DNA sequencing using nanopores and kinetic proofreading","authors":"X. Ling","doi":"10.1007/s40484-020-0201-x","DOIUrl":"https://doi.org/10.1007/s40484-020-0201-x","url":null,"abstract":"","PeriodicalId":45660,"journal":{"name":"Quantitative Biology","volume":"1 1","pages":"1-8"},"PeriodicalIF":3.1,"publicationDate":"2020-07-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s40484-020-0201-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49224985","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptome-wide association studies: a view from Mendelian randomization 全转录组关联研究:孟德尔随机化的观点
IF 3.1 4区 生物学
Quantitative Biology Pub Date : 2020-06-17 DOI: 10.1007/s40484-020-0207-4
Huanhuan Zhu, Xiang Zhou
{"title":"Transcriptome-wide association studies: a view from Mendelian randomization","authors":"Huanhuan Zhu, Xiang Zhou","doi":"10.1007/s40484-020-0207-4","DOIUrl":"https://doi.org/10.1007/s40484-020-0207-4","url":null,"abstract":"","PeriodicalId":45660,"journal":{"name":"Quantitative Biology","volume":"1 1","pages":"1-15"},"PeriodicalIF":3.1,"publicationDate":"2020-06-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s40484-020-0207-4","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45821382","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 22
A censored-Poisson model based approach to the analysis of RNA-seq data 基于截尾泊松模型的RNA-seq数据分析方法
IF 3.1 4区 生物学
Quantitative Biology Pub Date : 2020-06-01 DOI: 10.1007/s40484-020-0208-3
Xing Chen, Y. Lai
{"title":"A censored-Poisson model based approach to the analysis of RNA-seq data","authors":"Xing Chen, Y. Lai","doi":"10.1007/s40484-020-0208-3","DOIUrl":"https://doi.org/10.1007/s40484-020-0208-3","url":null,"abstract":"","PeriodicalId":45660,"journal":{"name":"Quantitative Biology","volume":"1 1","pages":"1-17"},"PeriodicalIF":3.1,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s40484-020-0208-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47639660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Prediction and differential analysis of RNA secondary structure RNA二级结构的预测与差异分析
IF 3.1 4区 生物学
Quantitative Biology Pub Date : 2020-05-09 DOI: 10.1007/s40484-020-0205-6
Bo Yuan, Yao Lu, Q. Zhang, Lin Hou
{"title":"Prediction and differential analysis of RNA secondary structure","authors":"Bo Yuan, Yao Lu, Q. Zhang, Lin Hou","doi":"10.1007/s40484-020-0205-6","DOIUrl":"https://doi.org/10.1007/s40484-020-0205-6","url":null,"abstract":"","PeriodicalId":45660,"journal":{"name":"Quantitative Biology","volume":"1 1","pages":"1-10"},"PeriodicalIF":3.1,"publicationDate":"2020-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s40484-020-0205-6","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47773580","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
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