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Toward a Flexible Metadata Pipeline for Fish Specimen Images 面向鱼类标本图像的灵活元数据管道
International Conference on Metadata and Semantics Research Pub Date : 2022-11-18 DOI: 10.48550/arXiv.2211.15472
Dom Jebbia, Xiaojun Wang, Y. Bakiş, H. Bart, J. Greenberg
{"title":"Toward a Flexible Metadata Pipeline for Fish Specimen Images","authors":"Dom Jebbia, Xiaojun Wang, Y. Bakiş, H. Bart, J. Greenberg","doi":"10.48550/arXiv.2211.15472","DOIUrl":"https://doi.org/10.48550/arXiv.2211.15472","url":null,"abstract":"Flexible metadata pipelines are crucial for supporting the FAIR data principles. Despite this need, researchers seldom report their approaches for identifying metadata standards and protocols that support optimal flexibility. This paper reports on an initiative targeting the development of a flexible metadata pipeline for a collection containing over 300,000 digital fish specimen images, harvested from multiple data repositories and fish collections. The images and their associated metadata are being used for AI-related scientific research involving automated species identification, segmentation and trait extraction. The paper provides contextual background, followed by the presentation of a four-phased approach involving: 1. Assessment of the Problem, 2. Investigation of Solutions, 3. Implementation, and 4. Refinement. The work is part of the NSF Harnessing the Data Revolution, Biology Guided Neural Networks (NSF/HDR-BGNN) project and the HDR Imageomics Institute. An RDF graph prototype pipeline is presented, followed by a discussion of research implications and conclusion summarizing the results.","PeriodicalId":447500,"journal":{"name":"International Conference on Metadata and Semantics Research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127089931","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Materials Science Ontology Design with an Analytico-Synthetic Facet Analysis Framework 基于分析-合成面分析框架的材料科学本体设计
International Conference on Metadata and Semantics Research Pub Date : 2022-11-18 DOI: 10.48550/arXiv.2211.10407
Jane Greenberg, Scott J. Mcclellan, Xintong Zhao, Elijah J Kellner, D. Venator, Haoran Zhao, Jiacheng Shen, Xiaohua Hu, Yuan An
{"title":"Materials Science Ontology Design with an Analytico-Synthetic Facet Analysis Framework","authors":"Jane Greenberg, Scott J. Mcclellan, Xintong Zhao, Elijah J Kellner, D. Venator, Haoran Zhao, Jiacheng Shen, Xiaohua Hu, Yuan An","doi":"10.48550/arXiv.2211.10407","DOIUrl":"https://doi.org/10.48550/arXiv.2211.10407","url":null,"abstract":"Researchers across nearly every discipline seek to leverage ontologies for knowledge discovery and computational tasks; yet, the number of machine readable materials science ontologies is limited. The work presented in this paper explores the Processing, Structure, Properties and Performance (PSPP) framework for accelerating the development of materials science ontologies. We pursue a case study framed by the creation of an Aerogel ontology and a Battery Cathode ontology and demonstrate the Helping Interdisciplinary Vocabulary Engineer for Materials Science (HIVE4MAT) as a proof of concept showing PSPP relationships. The paper includes background context covering materials science, the PSPP framework, and faceted analysis for ontologies. We report our research objectives, methods, research procedures, and results. The findings indicate that the PSPP framework offers a rubric that may help guide and potentially accelerate ontology development.","PeriodicalId":447500,"journal":{"name":"International Conference on Metadata and Semantics Research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128447954","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Designing PIDs for Reproducible Science Using Time-Series Data 利用时间序列数据设计可重复科学的pid
International Conference on Metadata and Semantics Research Pub Date : 2022-09-21 DOI: 10.48550/arXiv.2209.10475
Wenji Tu, S. Makonin
{"title":"Designing PIDs for Reproducible Science Using Time-Series Data","authors":"Wenji Tu, S. Makonin","doi":"10.48550/arXiv.2209.10475","DOIUrl":"https://doi.org/10.48550/arXiv.2209.10475","url":null,"abstract":"As part of the investigation done by the IEEE Standards Association P2957 Working Group, called Big Data Governance and Metadata Management, the use of persistent identifiers (PIDs) is looked at for tackling the problem of reproducible research and science. This short paper proposes a preliminary method using PIDs to reproduce research results using time-series data. Furthermore, we feel it is possible to use the methodology and design for other types of datasets.","PeriodicalId":447500,"journal":{"name":"International Conference on Metadata and Semantics Research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131280920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Practical Approach of Actions for FAIRification Workflows 工作流程公平化行动的实用方法
International Conference on Metadata and Semantics Research Pub Date : 2022-01-19 DOI: 10.1007/978-3-030-98876-0_8
Natalia Queiroz de Oliveira, V. Borges, H. F. Rodrigues, M. Campos, G. R. Lopes
{"title":"A Practical Approach of Actions for FAIRification Workflows","authors":"Natalia Queiroz de Oliveira, V. Borges, H. F. Rodrigues, M. Campos, G. R. Lopes","doi":"10.1007/978-3-030-98876-0_8","DOIUrl":"https://doi.org/10.1007/978-3-030-98876-0_8","url":null,"abstract":"","PeriodicalId":447500,"journal":{"name":"International Conference on Metadata and Semantics Research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128218665","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
GAP Enhancing Semantic Interoperability of Genomic Datasets and Provenance Through Nanopublications GAP通过纳米出版物增强基因组数据集和来源的语义互操作性
International Conference on Metadata and Semantics Research Pub Date : 2021-11-16 DOI: 10.1007/978-3-030-98876-0_29
Matheus Pedra Puime Feijoó, Rodrigo Jardim, Sérgio Manuel Serra da Cruz, M. Campos
{"title":"GAP Enhancing Semantic Interoperability of Genomic Datasets and Provenance Through Nanopublications","authors":"Matheus Pedra Puime Feijoó, Rodrigo Jardim, Sérgio Manuel Serra da Cruz, M. Campos","doi":"10.1007/978-3-030-98876-0_29","DOIUrl":"https://doi.org/10.1007/978-3-030-98876-0_29","url":null,"abstract":"","PeriodicalId":447500,"journal":{"name":"International Conference on Metadata and Semantics Research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2021-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128509675","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
FAIR Metadata: A Community-driven Vocabulary Application FAIR元数据:社区驱动的词汇应用程序
International Conference on Metadata and Semantics Research Pub Date : 2021-11-06 DOI: 10.1007/978-3-030-98876-0_16
Christopher B. Rauch, Mat Kelly, J. Kunze, Jane Greenberg
{"title":"FAIR Metadata: A Community-driven Vocabulary Application","authors":"Christopher B. Rauch, Mat Kelly, J. Kunze, Jane Greenberg","doi":"10.1007/978-3-030-98876-0_16","DOIUrl":"https://doi.org/10.1007/978-3-030-98876-0_16","url":null,"abstract":"","PeriodicalId":447500,"journal":{"name":"International Conference on Metadata and Semantics Research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2021-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126284099","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Extraction of Character Profiles from the Gutenberg Archive 从古腾堡档案中提取人物档案
International Conference on Metadata and Semantics Research Pub Date : 2019-10-28 DOI: 10.1007/978-3-030-36599-8_32
Mattia Egloff, Davide Picca, A. Adamou
{"title":"Extraction of Character Profiles from the Gutenberg Archive","authors":"Mattia Egloff, Davide Picca, A. Adamou","doi":"10.1007/978-3-030-36599-8_32","DOIUrl":"https://doi.org/10.1007/978-3-030-36599-8_32","url":null,"abstract":"","PeriodicalId":447500,"journal":{"name":"International Conference on Metadata and Semantics Research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126026088","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Automated Subject Indexing of Domain Specific Collections Using Word Embeddings and General Purpose Thesauri 使用词嵌入和通用词典的领域特定集合的自动主题索引
International Conference on Metadata and Semantics Research Pub Date : 2019-10-28 DOI: 10.1007/978-3-030-36599-8_9
Michalis Sfakakis, Leonidas Papachristopoulos, Kyriaki Zoutsou, G. Tsakonas, C. Papatheodorou
{"title":"Automated Subject Indexing of Domain Specific Collections Using Word Embeddings and General Purpose Thesauri","authors":"Michalis Sfakakis, Leonidas Papachristopoulos, Kyriaki Zoutsou, G. Tsakonas, C. Papatheodorou","doi":"10.1007/978-3-030-36599-8_9","DOIUrl":"https://doi.org/10.1007/978-3-030-36599-8_9","url":null,"abstract":"","PeriodicalId":447500,"journal":{"name":"International Conference on Metadata and Semantics Research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127893340","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
An Ontology Based Approach for Data Leakage Prevention Against Advanced Persistent Threats 基于本体的高级持续威胁数据泄漏防护方法
International Conference on Metadata and Semantics Research Pub Date : 2019-10-28 DOI: 10.1007/978-3-030-36599-8_10
E. Kaya, I. Özçelik, Özgü Can
{"title":"An Ontology Based Approach for Data Leakage Prevention Against Advanced Persistent Threats","authors":"E. Kaya, I. Özçelik, Özgü Can","doi":"10.1007/978-3-030-36599-8_10","DOIUrl":"https://doi.org/10.1007/978-3-030-36599-8_10","url":null,"abstract":"","PeriodicalId":447500,"journal":{"name":"International Conference on Metadata and Semantics Research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132079426","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Digital Transformation of Research Processes in the Humanities 人文学科研究过程的数字化转型
International Conference on Metadata and Semantics Research Pub Date : 2019-10-28 DOI: 10.1007/978-3-030-36599-8_30
E. W. D. Luca, Riem Spielhaus
{"title":"Digital Transformation of Research Processes in the Humanities","authors":"E. W. D. Luca, Riem Spielhaus","doi":"10.1007/978-3-030-36599-8_30","DOIUrl":"https://doi.org/10.1007/978-3-030-36599-8_30","url":null,"abstract":"","PeriodicalId":447500,"journal":{"name":"International Conference on Metadata and Semantics Research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125748873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
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