{"title":"Spike - Reproducible Simulation Experiments with Configuration File Branching","authors":"J. Chodak, M. Heiner","doi":"10.1007/978-3-030-31304-3_19","DOIUrl":"https://doi.org/10.1007/978-3-030-31304-3_19","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129309945","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Biochemical Reaction Networks with Fuzzy Kinetic Parameters in Snoopy","authors":"George Assaf, M. Heiner, Fei Liu","doi":"10.1007/978-3-030-31304-3_17","DOIUrl":"https://doi.org/10.1007/978-3-030-31304-3_17","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"50 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124832048","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Isabel Cristina Pérez-Verona, M. Tribastone, Andrea Vandin
{"title":"A Large-Scale Assessment of Exact Model Reduction in the BioModels Repository","authors":"Isabel Cristina Pérez-Verona, M. Tribastone, Andrea Vandin","doi":"10.1007/978-3-030-31304-3_13","DOIUrl":"https://doi.org/10.1007/978-3-030-31304-3_13","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"15 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114644653","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Julien Martinelli, Jeremy Grignard, S. Soliman, F. Fages
{"title":"On Inferring Reactions from Data Time Series by a Statistical Learning Greedy Heuristics","authors":"Julien Martinelli, Jeremy Grignard, S. Soliman, F. Fages","doi":"10.1007/978-3-030-31304-3_25","DOIUrl":"https://doi.org/10.1007/978-3-030-31304-3_25","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"16 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131025431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
C. Guet, T. Henzinger, Claudia Igler, Tatjana Petrov, A. Sezgin
{"title":"Transient Memory in Gene Regulation","authors":"C. Guet, T. Henzinger, Claudia Igler, Tatjana Petrov, A. Sezgin","doi":"10.1007/978-3-030-31304-3_9","DOIUrl":"https://doi.org/10.1007/978-3-030-31304-3_9","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"36 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123985815","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Scalable Control of Asynchronous Boolean Networks","authors":"Cui Su, Soumya Paul, Jun Pang","doi":"10.1007/978-3-030-31304-3_28","DOIUrl":"https://doi.org/10.1007/978-3-030-31304-3_28","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"6 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125042570","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Bounding First Passage Times in Chemical Reaction Networks - Poster Abstract","authors":"Michael Backenköhler, L. Bortolussi, V. Wolf","doi":"10.1007/978-3-030-31304-3_31","DOIUrl":"https://doi.org/10.1007/978-3-030-31304-3_31","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"15 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116138211","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Wasserstein Distances for Estimating Parameters in Stochastic Reaction Networks","authors":"Kaan Öcal, R. Grima, G. Sanguinetti","doi":"10.1007/978-3-030-31304-3_24","DOIUrl":"https://doi.org/10.1007/978-3-030-31304-3_24","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"76 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121358381","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Symmetry Breaking for GATA-1/PU.1 Model","authors":"L. Přibylová, Barbora Losová","doi":"10.1007/978-3-030-31304-3_27","DOIUrl":"https://doi.org/10.1007/978-3-030-31304-3_27","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"93 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127061203","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. Vertes, Albert-Baskar Arul, P. Avar, Andrew R. Korte, Lida Parvin, Ziad J. Sahab, Deborah I. Bunin, M. Knapp, D. Nishita, Andy Poggio, Mark-Oliver Stehr, C. Talcott, Brian M. Davis, Christine A. Morton, Christopher J. Sevinsky, M. Zavodszky
{"title":"Transcriptional Response of SK-N-AS Cells to Methamidophos","authors":"A. Vertes, Albert-Baskar Arul, P. Avar, Andrew R. Korte, Lida Parvin, Ziad J. Sahab, Deborah I. Bunin, M. Knapp, D. Nishita, Andy Poggio, Mark-Oliver Stehr, C. Talcott, Brian M. Davis, Christine A. Morton, Christopher J. Sevinsky, M. Zavodszky","doi":"10.1007/978-3-030-31304-3_29","DOIUrl":"https://doi.org/10.1007/978-3-030-31304-3_29","url":null,"abstract":"","PeriodicalId":433620,"journal":{"name":"Computational Methods in Systems Biology","volume":"40 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-08-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129929807","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}