Biomedical Engineering and Computational Biology最新文献

{"title":"Next-Generation Microfluidics for Biomedical Research and Healthcare Applications.","authors":"Muhammedin Deliorman, Dima Samer Ali, Mohammad A Qasaimeh","doi":"10.1177/11795972231214387","DOIUrl":"10.1177/11795972231214387","url":null,"abstract":"<p><p>Microfluidic systems offer versatile biomedical tools and methods to enhance human convenience and health. Advances in these systems enables next-generation microfluidics that integrates automation, manipulation, and smart readout systems, as well as design and three-dimensional (3D) printing for precise production of microchannels and other microstructures rapidly and with great flexibility. These 3D-printed microfluidic platforms not only control the complex fluid behavior for various biomedical applications, but also serve as microconduits for building 3D tissue constructs-an integral component of advanced drug development, toxicity assessment, and accurate disease modeling. Furthermore, the integration of other emerging technologies, such as advanced microscopy and robotics, enables the spatiotemporal manipulation and high-throughput screening of cell physiology within precisely controlled microenvironments. Notably, the portability and high precision automation capabilities in these integrated systems facilitate rapid experimentation and data acquisition to help deepen our understanding of complex biological systems and their behaviors. While certain challenges, including material compatibility, scaling, and standardization still exist, the integration with artificial intelligence, the Internet of Things, smart materials, and miniaturization holds tremendous promise in reshaping traditional microfluidic approaches. This transformative potential, when integrated with advanced technologies, has the potential to revolutionize biomedical research and healthcare applications, ultimately benefiting human health. This review highlights the advances in the field and emphasizes the critical role of the next generation microfluidic systems in advancing biomedical research, point-of-care diagnostics, and healthcare systems.</p>","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"14 ","pages":"11795972231214387"},"PeriodicalIF":2.8,"publicationDate":"2023-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10683381/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138463291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Prediction of Druggable Allosteric Sites of Undruggable Multidrug Resistance Efflux Pump <i>P. Gingivalis</i> Proteins.","authors":"Pradeep Kumar Yadalam,&nbsp;Raghavendra Vamsi Anegundi,&nbsp;Artak Heboyan","doi":"10.1177/11795972231202394","DOIUrl":"https://doi.org/10.1177/11795972231202394","url":null,"abstract":"4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). https://doi.org/10.1177/11795972231202394 Biomedical Engineering and Computational Biology Volume 14: 1–2 © The Author(s) 2023 Article reuse guidelines: sagepub.com/journals-permissions DOI: 10.1177/1 795972231 02394","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"14 ","pages":"11795972231202394"},"PeriodicalIF":2.8,"publicationDate":"2023-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/ca/55/10.1177_11795972231202394.PMC10515579.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41159980","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"<i>In-silico</i> Structural Modeling of Human Immunodeficiency Virus Proteins.","authors":"Amir Elalouf","doi":"10.1177/11795972231154402","DOIUrl":"https://doi.org/10.1177/11795972231154402","url":null,"abstract":"<p><p>Human immunodeficiency virus (HIV) is an infectious virus that depletes the CD4⁺ <i>T</i> lymphocytes of the immune system and causes a chronic life-treating disease-acquired immunodeficiency syndrome (AIDS). The HIV genome encodes different structural and accessory proteins involved in viral entry and life cycle. Determining the 3D structure of HIV proteins is essential for new target position finding, structure-based drug designing, and future planning for computational and laboratory experimentations. Hence, the study aims to predict the 3D structures of all the HIV structural and accessory proteins using computational homology modeling to understand better the structural basis of HIV proteins interacting with host cells and viral replication. The sequences of HIV capsid, matrix, nucleocapsid, p6, reverse transcriptase, invertase, protease, gp120, gp41, virus protein r, viral infectivity factor, virus protein unique, RNA splicing regulator, transactivator protein, negative regulating factor, and virus protein x proteins were retrieved from UniProt. The primary and secondary structures of HIV proteins were predicted by Expasy ProtParam and SOPMA web servers. For the homology modeling, the MODELLER predicted the 3D structures of HIV proteins using templates. Then, the modeled structures were validated by the Ramachandran plot, local and global quality estimation scores, QMEAN scores, and <i>Z</i>-scores. Most of the amino acid residues of HIV proteins were present in the most favored and generously allowed regions in the Ramachandran plots. The local and global quality scores and <i>Z</i>-scores of the HIV proteins confirmed the good quality of modeled structures. The 3D modeled structures of HIV proteins might help further investigate the possible treatment.</p>","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"14 ","pages":"11795972231154402"},"PeriodicalIF":2.8,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/8d/21/10.1177_11795972231154402.PMC9936402.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9317001","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Digital Filtering and Signal Decomposition: A Priori and Adaptive Approaches in Body Area Sensing.","authors":"Roya Haratian","doi":"10.1177/11795972231166236","DOIUrl":"https://doi.org/10.1177/11795972231166236","url":null,"abstract":"<p><p>Elimination of undesired signals from a mixture of captured signals in body area sensing systems is studied in this paper. A series of filtering techniques including a priori and adaptive approaches are explored in detail and applied involving decomposition of signals along a new system's axis to separate the desired signals from other sources in the original data. Within the context of a case study in body area systems, a motion capture scenario is designed and the introduced signal decomposition techniques are critically evaluated and a new one is proposed. Applying the studied filtering and signal decomposition techniques demonstrates that the functional based approach outperforms the rest in reducing the effect of undesired changes in collected motion data which are due to random changes in sensors positioning. The results showed that the proposed technique reduces variations in the data for average of 94% outperforming the rest of the techniques in the case study although it will add computational complexity. Such technique helps wider adaptation of motion capture systems with less sensitivity to accurate sensor positioning; therefore, more portable body area sensing system.</p>","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"14 ","pages":"11795972231166236"},"PeriodicalIF":2.8,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/13/22/10.1177_11795972231166236.PMC10108405.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9752896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Biomedical and Computational Biology: Second International Symposium, BECB 2022, Virtual Event, August 13–15, 2022, Revised Selected Papers","authors":"","doi":"10.1007/978-3-031-25191-7","DOIUrl":"https://doi.org/10.1007/978-3-031-25191-7","url":null,"abstract":"","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"100 4","pages":""},"PeriodicalIF":2.8,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72419875","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Hydroxyapatite-Bioceramic/Expanded Perlite Hybrid Composites Coating on Ti₆Al₄V by Hydrothermal Method and in vitro Behavior.","authors":"Mehtap Muratoğlu,&nbsp;Tuğçe Özcan","doi":"10.1177/11795972231151348","DOIUrl":"https://doi.org/10.1177/11795972231151348","url":null,"abstract":"<p><p>This study was aimed to coat a hybrid bioceramic composite onto Ti₆Al₄V by using hydrothermal method. The Hybrid bioceramic composite for coating was prepared by reinforcing different rations of expanded perlite (EP) and 5 wt.% chitosan into synthesized Hydroxyapatite (HA). Coating was performed at 1800°C for 12 hours. The coated specimens were gradually subjected to a sintering at 6000°C for 1 hour. For in vitro analysis, the specimens were kept in Ringer's solution for 1, 10, and 25 days. All specimens were examined by SEM, EDX, FTIR, and surface roughness analyses for characterizing. It was concluded that as the reinforcement ratio increased, there was an increase in coating thickness and surface roughness. The optimum reinforcement ratio for expanded perlite can be 10 wt.% (A3-B3). With increasing ratio of calcium (Ca) and phosphate (P) (Ca/P), the surface becomes more active in body fluid and then observed the formation of the hydroxycarbonate apatite (HCA) layer. As the waiting time increased, there was an increase in the formation of an apatite structure.</p>","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"14 ","pages":"11795972231151348"},"PeriodicalIF":2.8,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/69/d8/10.1177_11795972231151348.PMC10186576.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10645370","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Finite Element Model-Computed Mechanical Behavior of Femurs with Metastatic Disease Varies Between Physiologic and Idealized Loading Simulations.","authors":"Joshua E Johnson,&nbsp;Marc J Brouillette,&nbsp;Benjamin J Miller,&nbsp;Jessica E Goetz","doi":"10.1177/11795972231166240","DOIUrl":"https://doi.org/10.1177/11795972231166240","url":null,"abstract":"<p><strong>Background and objectives: </strong>Femurs affected by metastatic bone disease (MBD) frequently undergo surgery to prevent impending pathologic fractures due to clinician-perceived increases in fracture risk. Finite element (FE) models can provide more objective assessments of fracture risk. However, FE models of femurs with MBD have implemented strain- and strength-based estimates of fracture risk under a wide variety of loading configurations, and \"physiologic\" loading models typically simulate a single abductor force. Due to these variations, it is currently difficult to interpret mechanical fracture risk results across studies of femoral MBD. Our aims were to evaluate (1) differences in mechanical behavior between idealized loading configurations and those incorporating physiologic muscle forces, and (2) differences in the rankings of mechanical behavior between different loading configurations, in FE simulations to predict fracture risk in femurs with MBD.</p><p><strong>Methods: </strong>We evaluated 9 different patient-specific FE loading simulations for a cohort of 54 MBD femurs: <i>strain outcome</i> simulations-physiologic (normal walking [NW], stair ascent [SA], stumbling), and joint contact only (NW contact force, excluding muscle forces); <i>strength outcome</i> simulations-physiologic (NW, SA), joint contact only, offset torsion, and sideways fall. Tensile principal strain and femur strength were compared between simulations using statistical analyses.</p><p><strong>Results: </strong>Tensile principal strain was 26% higher (<i>R</i> ² = 0.719, <i>P</i> < .001) and femur strength was 4% lower (<i>R</i> ² = 0.984, <i>P</i> < .001) in simulations excluding physiologic muscle forces. Rankings of the mechanical predictions were correlated between the strain outcome simulations (ρ = 0.723 to 0.990, <i>P</i> < .001), and between strength outcome simulations (ρ = 0.524 to 0.984, <i>P</i> < .001).</p><p><strong>Conclusions: </strong>Overall, simulations incorporating physiologic muscle forces affected local strain outcomes more than global strength outcomes. Absolute values of strain and strength computed using idealized (no muscle forces) and physiologic loading configurations should be used within the appropriate context when interpreting fracture risk in femurs with MBD.</p>","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"14 ","pages":"11795972231166240"},"PeriodicalIF":2.8,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/07/41/10.1177_11795972231166240.PMC10068135.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9626486","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Deep Learning Based Classification of Dermatological Disorders.","authors":"Lulwah AlSuwaidan","doi":"10.1177/11795972221138470","DOIUrl":"https://doi.org/10.1177/11795972221138470","url":null,"abstract":"<p><p>Automated medical diagnosis has become crucial and significantly supports medical doctors. Thus, there is a demand for inventing deep learning (DL) and convolutional networks for analyzing medical images. Dermatology, in particular, is one of the domains that was recently targeted by AI specialists to introduce new DL algorithms or enhance convolutional neural network (CNN) architectures. A significantly high proportion of studies in the field are concerned with skin cancer, whereas other dermatological disorders are still limited. In this work, we examined the performance of 6 CNN architectures named VGG16, EfficientNet, InceptionV3, MobileNet, NasNet, and ResNet50 for the top 3 dermatological disorders that frequently appear in the Middle East. An Image filtering and denoising were imposed in this work to enhance image quality and increase architecture performance. Experimental results revealed that MobileNet achieved the highest performance and accuracy among the CNN architectures and can classify disorder with high performance (95.7% accuracy). Future scope will focus more on proposing a new methodology for deep-based classification. In addition, we will expand the dataset for more images that consider new disorders and variations.</p>","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"14 ","pages":"11795972221138470"},"PeriodicalIF":2.8,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/20/4b/10.1177_11795972221138470.PMC10392223.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9932977","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Assessing Paracetamol Overdose in Children: Acceptability and Potential Market for a Non-Invasive Testing Device.","authors":"Debora Freitas,&nbsp;Christopher Parry,&nbsp;Gabrielle Seddon,&nbsp;Jana Lemke,&nbsp;James Moss,&nbsp;Neville Freeman,&nbsp;Julie Grice,&nbsp;Daniel B Hawcutt","doi":"10.1177/11795972221140108","DOIUrl":"https://doi.org/10.1177/11795972221140108","url":null,"abstract":"<p><strong>Background: </strong>Assessment of paracetamol overdose in children and teenagers in the emergency department (ED) requires blood, taken 4 hours post ingestion. A commercial partner developed transdermal paracetamol measuring technology. This work aims to understand the acceptability of such a device, and potential market size.</p><p><strong>Methods: </strong>A questionnaire study was undertaken with children and parents attending Alder Hey Children's Hospital, and healthcare professionals (HCP) involved in their care. A retrospective audit of paracetamol ingestion presenting to a paediatric ED was undertaken.</p><p><strong>Results: </strong>One hundred forty-three questionnaires were distributed, and 139 returned (response rate 97.2%), comprising 55 children, 52 parents and 32 HCP (recruited between August-October 2019). Overall device acceptability, assessed by favourability of appearance and willingness to wear was high, at 60.0% and 81.5% respectively. Concerns raised included bulky size and weight, and concern regarding the duration younger children would tolerate wearing the device. All groups, including children, ranked accuracy of results as the most important device feature and device comfort the least important. Parents prioritised avoidance of blood tests more than children. One hundred twenty-seven children presented to ED with paracetamol ingestion (September 2017-August 2018), with 57 (44.9%) categorised as accidental overdose. Overall, 106 (83.4%) required paracetamol concentration measuring, and 25 (19.7%) of these required treatment with N-acetylcysteine. Extrapolating nationally, over 7000 children will present with accidental overdose per annum in the UK.</p><p><strong>Conclusion: </strong>Acceptability of a non-invasive paracetamol sensor was high in all groups, provided accuracy could be assured.</p>","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"14 ","pages":"11795972221140108"},"PeriodicalIF":2.8,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9902896/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10746502","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Assessing the Effect of Directional Bremsstrahlung Splitting on the Output Spectra and Parameters Using BEAMnrc Monte Carlo Simulation Package.","authors":"Hamed Babapour,&nbsp;Somayeh Semyari,&nbsp;Masoumeh Yadollahi,&nbsp;Mehrsa Majdaeen,&nbsp;Razzagh Abedi-Firouzjah,&nbsp;Gholamreza Ataei","doi":"10.1177/11795972221138473","DOIUrl":"https://doi.org/10.1177/11795972221138473","url":null,"abstract":"<p><strong>Introduction: </strong>EGSnrc software package is one of the computational packages for Monte Carlo simulation in radiation therapy and has several subset codes. Directional bremsstrahlung splitting (DBS) is a technique that applies braking radiations in interactions in this software. This study aimed to evaluate the effect of this technique on the simulation time, uncertainty, particle number of phase-space data, and photon beam spectrum resulting from a medical linear accelerator (LINAC).</p><p><strong>Materials and methods: </strong>The gantry of the accelerator, including the materials and geometries of different parts, was simulated using the BEAMnrc code (a subset code in the EGSnrc package). The phase-space data were recorded in different parts of the LINAC. The DBS values (1, 10, 100, and 1000) were changed, and their effects were evaluated on the simulation parameters and output spectra.</p><p><strong>Results: </strong>Increasing the DBS value from 1 to 1000 resulted in an increase in the simulation time from 1.778 to 11.310 hours, and increasing the number of particles in the phase-space plane (5 590 732-180 328 382). When the DBS had been picked up from 1 to 100, the simulation uncertainty decreased by about 1.29%. In addition, the DBS increment value from 100 to 1000 leads to an increase in uncertainty and simulation time of about 0.71% and 315%, respectively.</p><p><strong>Conclusion: </strong>Although using the DBS technique reduces the simulation time or uncertainty, increasing the DBS from a specific value, equal to 100 in our study, increases simulation uncertainties and times. Therefore, we propose considering a specific DBS value as we obtained for the Monte Carlo simulation of photon beams produced by linear accelerators.</p>","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"13 ","pages":"11795972221138473"},"PeriodicalIF":2.8,"publicationDate":"2022-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/fb/fb/10.1177_11795972221138473.PMC9716629.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"35207968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}