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Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units 生态指示器:一个用于指示器分类单位识别的R包
Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.452
Andrés Esteban Duhour, Hernán de la Vega, Liliana Falco, Carlos Coviella, Nicolás Velazco, Rosana Sandler, Macarena Rionda, Mónica Díaz Porres, Leonardo Saravia
{"title":"Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units","authors":"Andrés Esteban Duhour, Hernán de la Vega, Liliana Falco, Carlos Coviella, Nicolás Velazco, Rosana Sandler, Macarena Rionda, Mónica Díaz Porres, Leonardo Saravia","doi":"10.5334/jors.452","DOIUrl":"https://doi.org/10.5334/jors.452","url":null,"abstract":"The sensitivity of some taxonomic groups to environmental conditions allows for their use as ecological state indicators. In ecological communities, this analysis is of interest to know which species or taxa are indicators of particular environment conditions, taking into account their presence in a set of sampling units. There are different approaches to estimate indicator species, in this work we develop a new tool for this task identifying indicator units defined as species (or taxa) whose observed frequencies are not uniform between environments or groups of sample units. The package provides methods to estimate the indicator species, the belonging of new samples to a given environment, and returns the frequency of taxonomic units in a selected combination of environmental factors as an estimation of the ecological niche. EcoIndicators was tested on a data set provided with the package and on independent samples of soil fauna communities and is freely available in https://github.com/lsaravia/EcoIndicators.","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"7 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136304308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A NetHack Learning Environment Language Wrapper for Autonomous Agents 自主代理的NetHack学习环境语言包装器
Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.444
Nikolaj Goodger, P. Vamplew, Cameron Foale, Richard Dazeley
{"title":"A NetHack Learning Environment Language Wrapper for Autonomous Agents","authors":"Nikolaj Goodger, P. Vamplew, Cameron Foale, Richard Dazeley","doi":"10.5334/jors.444","DOIUrl":"https://doi.org/10.5334/jors.444","url":null,"abstract":"","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"70682492","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
pyHomogeneity: A Python Package for Homogeneity Test of Time Series Data pyhomo齐性:一个用于时间序列数据齐性检验的Python包
Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.427
M. Hussain, Ishtiak Mahmud, Sheikh Hefzul Bari
{"title":"pyHomogeneity: A Python Package for Homogeneity Test of Time Series Data","authors":"M. Hussain, Ishtiak Mahmud, Sheikh Hefzul Bari","doi":"10.5334/jors.427","DOIUrl":"https://doi.org/10.5334/jors.427","url":null,"abstract":"","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"70682631","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Micro-computed Tomography Database and Reference Implementation for Parallel Computations of Trabecular Thickness and Spacing 微计算机层析数据库及并行计算小梁厚度和间距的参考实现
Journal of Open Research Software Pub Date : 2022-03-16 DOI: 10.5334/jors.360
T. Nguyen, Andreas Höfter, Kevin Leonardic, S. Rosenhain, F. Kiessling, W. Sae-Tang, U. Naumann, F. Gremse
{"title":"A Micro-computed Tomography Database and Reference Implementation for Parallel Computations of Trabecular Thickness and Spacing","authors":"T. Nguyen, Andreas Höfter, Kevin Leonardic, S. Rosenhain, F. Kiessling, W. Sae-Tang, U. Naumann, F. Gremse","doi":"10.5334/jors.360","DOIUrl":"https://doi.org/10.5334/jors.360","url":null,"abstract":"","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-03-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46904179","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
“StudySandboxx: A Tool for Scraping, Sandboxing, Preserving, and Preparing Interactive Web Sites for Use in Human-computer Interaction and Behavioral Studies” studyssandboxx:一个用于抓取、沙盒、保存和准备交互式网站的工具，用于人机交互和行为研究
Journal of Open Research Software Pub Date : 2022-01-01 DOI: 10.5334/jors.274
Gabi Wethor, M. Hale
{"title":"“StudySandboxx: A Tool for Scraping, Sandboxing, Preserving, and Preparing Interactive Web Sites for Use in Human-computer Interaction and Behavioral Studies”","authors":"Gabi Wethor, M. Hale","doi":"10.5334/jors.274","DOIUrl":"https://doi.org/10.5334/jors.274","url":null,"abstract":"","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"70681519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Research Software Encyclopedia: A Community Framework to Define Research Software 研究软件百科全书:定义研究软件的社区框架
Journal of Open Research Software Pub Date : 2022-01-01 DOI: 10.5334/jors.359
V. Sochat, Nicholas R. May, I. Cosden, C. Martinez-Ortiz, Sadie L. Bartholomew
{"title":"The Research Software Encyclopedia: A Community Framework to Define Research Software","authors":"V. Sochat, Nicholas R. May, I. Cosden, C. Martinez-Ortiz, Sadie L. Bartholomew","doi":"10.5334/jors.359","DOIUrl":"https://doi.org/10.5334/jors.359","url":null,"abstract":"ABSTRACT","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"70681596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Uavnoma: A UAV-NOMA Network Model under Non-Ideal Conditions Uavnoma:非理想条件下的无人机- noma网络模型
Journal of Open Research Software Pub Date : 2022-01-01 DOI: 10.5334/jors.397
B. Lima, Nuno Fachada, R. Dinis, Daniel B. Costa, M. Beko
{"title":"Uavnoma: A UAV-NOMA Network Model under Non-Ideal Conditions","authors":"B. Lima, Nuno Fachada, R. Dinis, Daniel B. Costa, M. Beko","doi":"10.5334/jors.397","DOIUrl":"https://doi.org/10.5334/jors.397","url":null,"abstract":"Uavnoma is a set of Python functions and a front-end script for modeling, studying, and analyzing the communication system composed by an unmanned aerial vehicle (UAV) and two ground users. We assume that the UAV acts as an aerial base station to serve the users according to non-orthogonal multiple access (NOMA) principles. For more practical insights, residual hardware impairments (RHI) and imperfect successive interference cancellation (ipSIC) are considered. More specifically, uavnoma allows the modelers to study and visualize the system performance in terms of achievable rate and outage probability. Additionally, the package produces figures and tables showcasing results from the specified performance metrics","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"70681767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Open-Source MUltiple Tests Corrections and FOrmatted Tables Software (MUFOS) 开源多重测试修正和格式化表格软件(MUFOS)
Journal of Open Research Software Pub Date : 2022-01-01 DOI: 10.5334/jors.350
Nikolay Petrov, V. Atanasov, Trevor Thompson
{"title":"Open-Source MUltiple Tests Corrections and FOrmatted Tables Software (MUFOS)","authors":"Nikolay Petrov, V. Atanasov, Trevor Thompson","doi":"10.5334/jors.350","DOIUrl":"https://doi.org/10.5334/jors.350","url":null,"abstract":"Open-Source MUltiple Tests Corrections and FOrmatted Tables Software (MUFOS)","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"49 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"70681643","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rho: Application to Analyze Electrical Resistivity 分析电阻率的应用
Journal of Open Research Software Pub Date : 2022-01-01 DOI: 10.5334/jors.417
M. Berrada, R. Secco
{"title":"Rho: Application to Analyze Electrical Resistivity","authors":"M. Berrada, R. Secco","doi":"10.5334/jors.417","DOIUrl":"https://doi.org/10.5334/jors.417","url":null,"abstract":"","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"70681833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
What Do We (Not) Know About Research Software Engineering? 关于研究型软件工程，我们知道(不知道)什么?
Journal of Open Research Software Pub Date : 2022-01-01 DOI: 10.5334/jors.384
Anna-Lena Lamprecht, C. Martinez-Ortiz, M. Barker, Sadie L. Bartholomew, Justin Barton, Neil Philippe Chue Hong, Jeremy Cohen, Stephan Druskat, Jeremy Forest, Jean‐Noel Grad, D. Katz, Robin Richardson, R. Rosca, Douwe Schulte, A. Struck, Marion Weinzierl
{"title":"What Do We (Not) Know About Research Software Engineering?","authors":"Anna-Lena Lamprecht, C. Martinez-Ortiz, M. Barker, Sadie L. Bartholomew, Justin Barton, Neil Philippe Chue Hong, Jeremy Cohen, Stephan Druskat, Jeremy Forest, Jean‐Noel Grad, D. Katz, Robin Richardson, R. Rosca, Douwe Schulte, A. Struck, Marion Weinzierl","doi":"10.5334/jors.384","DOIUrl":"https://doi.org/10.5334/jors.384","url":null,"abstract":"As recognition of the vital importance of software for contemporary research is increasing, Research Software Engineering (RSE) is emerging as a discipline in its own right. We present an inventory of relevant research questions about RSE as a basis for future research and initiatives to advance the field, highlighting selected literature and initiatives. This work is the outcome of a RSE community workshop held as part of the 2020 International Series of Online Research Software Events (SORSE) which identified and prioritized key questions across three overlapping themes: people, policy and infrastructure. Almost half of the questions focus on the people theme","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"70682075","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
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