Journal of Open Research Software最新文献

WEARDA: Recording Wearable Sensor Data for Human Activity Monitoring WEARDA:记录用于人类活动监测的可穿戴传感器数据

Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.454

Richard M. K. van Dijk, Daniela Gawehns, Matthijs van Leeuwen

{"title":"WEARDA: Recording Wearable Sensor Data for Human Activity Monitoring","authors":"Richard M. K. van Dijk, Daniela Gawehns, Matthijs van Leeuwen","doi":"10.5334/jors.454","DOIUrl":"https://doi.org/10.5334/jors.454","url":null,"abstract":"We present WEARDA,1 the open source WEARable sensor Data Acquisition software package. WEARDA facilitates the acquisition of human activity data with smartwatches and is primarily aimed at researchers who require transparency, full control, and access to raw sensor data. It provides functionality to simultaneously record raw data from four sensors—tri-axis accelerometer, tri-axis gyroscope, barometer, and GPS—which should enable researchers to, for example, estimate energy expenditure and mine movement trajectories. A Samsung smartwatch running the Tizen OS was chosen because of 1) the required functionalities of the smartwatch software API, 2) the availability of software development tools and accessible documentation, 3) having the required sensors, and 4) the requirements on case design for acceptance by the target user group. WEARDA addresses five practical challenges concerning preparation, measurement, logistics, privacy preservation, and reproducibility to ensure efficient and errorless data collection. The software package was initially created for the project “Dementia back at the heart of the community”,2 and has been successfully used in that context.","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"29 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135210955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

CastorEDC API: A Python Package for Managing Real World Data in Castor Electronic Data Capture CastorEDC API:在Castor电子数据捕获中管理真实世界数据的Python包

Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.436

Reinier Cornelis Anthonius van Linschoten, Sebastiaan Laurens Knijnenburg, Rachel Louise West, Desirée van Noord

引用次数: 0

GTdownloader: A Python Package to Download, Visualize, and Export Georeferenced Tweets From the Twitter API GTdownloader:一个Python包，用于从Twitter API下载、可视化和导出地理参考推文

Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.443

Juan Acosta-Sequeda, S. Derrible

引用次数: 0

Plots.jl – A User Extendable Plotting API for the Julia Programming Language 情节。Julia编程语言的用户可扩展绘图API

Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.431

Simon Christ, Daniel Schwabeneder, Christopher Rackauckas, Michael Krabbe Borregaard, Thomas Breloff

{"title":"Plots.jl – A User Extendable Plotting API for the Julia Programming Language","authors":"Simon Christ, Daniel Schwabeneder, Christopher Rackauckas, Michael Krabbe Borregaard, Thomas Breloff","doi":"10.5334/jors.431","DOIUrl":"https://doi.org/10.5334/jors.431","url":null,"abstract":"There are many excellent plotting libraries. Each excels at a specific use case: one is particularly suited for creating printable 2D figures for publication, another for generating interactive 3D graphics, while a third may have excellent LATEX integration or be ideal for creating dashboards on the web. The aim of <tt>Plots.jl</tt> is to enable the user to use the same syntax to interact with a range of different plotting libraries, making it possible to change the library that does the actual plotting (the backend) without needing to touch the code that creates the content – and without having to learn multiple application programming interfaces (API). This is achieved by separating the specification of the plot from the implementation of the graphical backend. This plot specification is extendable by a recipe system that allows package authors and users to create new types of plots, as well as to specify how to plot any type of object (e.g. a statistical model, a map, a phylogenetic tree or the solution to a system of differential equations) without depending on the <tt>Plots.jl</tt> package. This design supports a modular ecosystem structure for plotting and yields a high code reuse potential across the entire Julia package ecosystem. <tt>Plots.jl</tt> is publicly available at <a href=\"https://github.com/JuliaPlots/Plots.jl\" target=\"_blank\">https://github.com/JuliaPlots/Plots.jl</a>.","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"38 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135959476","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 6

Automated Discovery of Container Executables 自动发现容器可执行文件

Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.451

V. Sochat, Matthieu Muffato, Audrey Stott, Marco De La Pierre, Georgia K. Stuart

{"title":"Automated Discovery of Container Executables","authors":"V. Sochat, Matthieu Muffato, Audrey Stott, Marco De La Pierre, Georgia K. Stuart","doi":"10.5334/jors.451","DOIUrl":"https://doi.org/10.5334/jors.451","url":null,"abstract":"Linux container technologies such as Docker and Singularity offer encapsulated environments for easy execution of software. In high performance computing, this is especially important for evolving and complex software stacks with conflicting dependencies that must co-exist. Singularity Registry HPC (“shpc”) was created as an effort to install containers in this environment as modules, seamlessly allowing for typically hidden executables inside containers to be presented to the user as commands, and as such significantly simplifying the user experience. A remaining challenge, however, is deriving the list of important executables in the container. In this work, we present a new modular methodology that allows for discovering new containers in large community sets, deriving container entries with relevant executables therein, and fully automating both recipe generation and updates over time. As an exemplar outcome, we have employed this methodology to add to the Registry over 8,000 containers from the BioContainers community that can be maintained and updated by the software automation. All software is publicly available on the GitHub platform, and can be beneficial to container registries and infrastructure providers for automatically generating container modules, thus lowering the usage entry barrier and improving user experience.","PeriodicalId":37323,"journal":{"name":"Journal of Open Research Software","volume":"30 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"70682496","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Taskfarm: A Client/Server Framework for Supporting Massive Embarrassingly Parallel Workloads Taskfarm:一个支持大量并行工作负载的客户端/服务器框架

Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.393

M. Hagdorn, N. Gourmelen

引用次数: 0

Fan-Slicer: A Pycuda Package for Fast Reslicing of Ultrasound Shaped Planes 风扇切片机:一个Pycuda包快速切割超声形状的平面

Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.422

João Ramalhinho, T. Dowrick, E. Bonmati, M. Clarkson

引用次数: 0

MARIO: A Versatile and User-Friendly Software for Building Input-Output Models 马里奥:一个多功能和用户友好的软件，用于建立输入输出模型

Journal of Open Research Software Pub Date : 2023-01-01 DOI: 10.5334/jors.473

Mohammad Amin Tahavori, Nicolò Golinucci, Lorenzo Rinaldi, Matteo Vincenzo Rocco, Emanuela Colombo