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Developing, pilot testing, and refining requirements for 3 EHR-integrated interventions to improve diagnostic safety in acute care: a user-centered approach. 开发、试点测试和完善 3 项电子病历集成干预措施的要求,以改善急症护理中的诊断安全:以用户为中心的方法。
IF 2.1
JAMIA Open Pub Date : 2023-05-10 eCollection Date: 2023-07-01 DOI: 10.1093/jamiaopen/ooad031
Alison Garber, Pamela Garabedian, Lindsey Wu, Alyssa Lam, Maria Malik, Hannah Fraser, Kerrin Bersani, Nicholas Piniella, Daniel Motta-Calderon, Ronen Rozenblum, Kumiko Schnock, Jacqueline Griffin, Jeffrey L Schnipper, David W Bates, Anuj K Dalal
{"title":"Developing, pilot testing, and refining requirements for 3 EHR-integrated interventions to improve diagnostic safety in acute care: a user-centered approach.","authors":"Alison Garber, Pamela Garabedian, Lindsey Wu, Alyssa Lam, Maria Malik, Hannah Fraser, Kerrin Bersani, Nicholas Piniella, Daniel Motta-Calderon, Ronen Rozenblum, Kumiko Schnock, Jacqueline Griffin, Jeffrey L Schnipper, David W Bates, Anuj K Dalal","doi":"10.1093/jamiaopen/ooad031","DOIUrl":"10.1093/jamiaopen/ooad031","url":null,"abstract":"<p><strong>Objective: </strong>To describe a user-centered approach to develop, pilot test, and refine requirements for 3 electronic health record (EHR)-integrated interventions that target key diagnostic process failures in hospitalized patients.</p><p><strong>Materials and methods: </strong>Three interventions were prioritized for development: a Diagnostic Safety Column (<i>DSC</i>) within an EHR-integrated dashboard to identify at-risk patients; a Diagnostic Time-Out (<i>DTO</i>) for clinicians to reassess the working diagnosis; and a Patient Diagnosis Questionnaire (<i>PDQ</i>) to gather patient concerns about the diagnostic process. Initial requirements were refined from analysis of test cases with elevated risk predicted by <i>DSC</i> logic compared to risk perceived by a clinician working group; <i>DTO</i> testing sessions with clinicians; <i>PDQ</i> responses from patients; and focus groups with clinicians and patient advisors using storyboarding to model the integrated interventions. Mixed methods analysis of participant responses was used to identify final requirements and potential implementation barriers.</p><p><strong>Results: </strong>Final requirements from analysis of 10 test cases predicted by the <i>DSC</i>, 18 clinician <i>DTO</i> participants, and 39 <i>PDQ</i> responses included the following: <i>DSC</i> configurable parameters (variables, weights) to adjust baseline risk estimates in real-time based on new clinical data collected during hospitalization; more concise <i>DTO</i> wording and flexibility for clinicians to conduct the <i>DTO</i> with or without the patient present; and integration of <i>PDQ</i> responses into the <i>DSC</i> to ensure closed-looped communication with clinicians. Analysis of focus groups confirmed that tight integration of the interventions with the EHR would be necessary to prompt clinicians to reconsider the working diagnosis in cases with elevated diagnostic error (DE) risk or uncertainty. Potential implementation barriers included alert fatigue and distrust of the risk algorithm (<i>DSC</i>); time constraints, redundancies, and concerns about disclosing uncertainty to patients (<i>DTO</i>); and patient disagreement with the care team's diagnosis (<i>PDQ</i>).</p><p><strong>Discussion: </strong>A user-centered approach led to evolution of requirements for 3 interventions targeting key diagnostic process failures in hospitalized patients at risk for DE.</p><p><strong>Conclusions: </strong>We identify challenges and offer lessons from our user-centered design process.</p>","PeriodicalId":36278,"journal":{"name":"JAMIA Open","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2023-05-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/a6/b8/ooad031.PMC10172040.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9523709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A metadata framework for computational phenotypes. 计算表型的元数据框架。
IF 2.1
JAMIA Open Pub Date : 2023-05-09 eCollection Date: 2023-07-01 DOI: 10.1093/jamiaopen/ooad032
Matthew Spotnitz, Nripendra Acharya, James J Cimino, Shawn Murphy, Bahram Namjou, Nancy Crimmins, Theresa Walunas, Cong Liu, David Crosslin, Barbara Benoit, Elisabeth Rosenthal, Jennifer A Pacheco, Anna Ostropolets, Harry Reyes Nieva, Jason S Patterson, Lauren R Richter, Tiffany J Callahan, Ahmed Elhussein, Chao Pang, Krzysztof Kiryluk, Jordan Nestor, Atlas Khan, Sumit Mohan, Evan Minty, Wendy Chung, Wei-Qi Wei, Karthik Natarajan, Chunhua Weng
{"title":"A metadata framework for computational phenotypes.","authors":"Matthew Spotnitz, Nripendra Acharya, James J Cimino, Shawn Murphy, Bahram Namjou, Nancy Crimmins, Theresa Walunas, Cong Liu, David Crosslin, Barbara Benoit, Elisabeth Rosenthal, Jennifer A Pacheco, Anna Ostropolets, Harry Reyes Nieva, Jason S Patterson, Lauren R Richter, Tiffany J Callahan, Ahmed Elhussein, Chao Pang, Krzysztof Kiryluk, Jordan Nestor, Atlas Khan, Sumit Mohan, Evan Minty, Wendy Chung, Wei-Qi Wei, Karthik Natarajan, Chunhua Weng","doi":"10.1093/jamiaopen/ooad032","DOIUrl":"10.1093/jamiaopen/ooad032","url":null,"abstract":"<p><p>With the burgeoning development of computational phenotypes, it is increasingly difficult to identify the right phenotype for the right tasks. This study uses a mixed-methods approach to develop and evaluate a novel metadata framework for retrieval of and reusing computational phenotypes. Twenty active phenotyping researchers from 2 large research networks, Electronic Medical Records and Genomics and Observational Health Data Sciences and Informatics, were recruited to suggest metadata elements. Once consensus was reached on 39 metadata elements, 47 new researchers were surveyed to evaluate the utility of the metadata framework. The survey consisted of 5-Likert multiple-choice questions and open-ended questions. Two more researchers were asked to use the metadata framework to annotate 8 type-2 diabetes mellitus phenotypes. More than 90% of the survey respondents rated metadata elements regarding phenotype definition and validation methods and metrics positively with a score of 4 or 5. Both researchers completed annotation of each phenotype within 60 min. Our thematic analysis of the narrative feedback indicates that the metadata framework was effective in capturing rich and explicit descriptions and enabling the search for phenotypes, compliance with data standards, and comprehensive validation metrics. Current limitations were its complexity for data collection and the entailed human costs.</p>","PeriodicalId":36278,"journal":{"name":"JAMIA Open","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2023-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168627/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10537266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A machine learning approach to determine resilience utilizing wearable device data: analysis of an observational cohort. 利用可穿戴设备数据确定复原力的机器学习方法:对观察队列的分析。
IF 2.5
JAMIA Open Pub Date : 2023-05-02 eCollection Date: 2023-07-01 DOI: 10.1093/jamiaopen/ooad029
Robert P Hirten, Maria Suprun, Matteo Danieletto, Micol Zweig, Eddye Golden, Renata Pyzik, Sparshdeep Kaur, Drew Helmus, Anthony Biello, Kyle Landell, Jovita Rodrigues, Erwin P Bottinger, Laurie Keefer, Dennis Charney, Girish N Nadkarni, Mayte Suarez-Farinas, Zahi A Fayad
{"title":"A machine learning approach to determine resilience utilizing wearable device data: analysis of an observational cohort.","authors":"Robert P Hirten, Maria Suprun, Matteo Danieletto, Micol Zweig, Eddye Golden, Renata Pyzik, Sparshdeep Kaur, Drew Helmus, Anthony Biello, Kyle Landell, Jovita Rodrigues, Erwin P Bottinger, Laurie Keefer, Dennis Charney, Girish N Nadkarni, Mayte Suarez-Farinas, Zahi A Fayad","doi":"10.1093/jamiaopen/ooad029","DOIUrl":"10.1093/jamiaopen/ooad029","url":null,"abstract":"<p><strong>Objective: </strong>To assess whether an individual's degree of psychological resilience can be determined from physiological metrics passively collected from a wearable device.</p><p><strong>Materials and methods: </strong>Data were analyzed in this secondary analysis of the Warrior Watch Study dataset, a prospective cohort of healthcare workers enrolled across 7 hospitals in New York City. Subjects wore an Apple Watch for the duration of their participation. Surveys were collected measuring resilience, optimism, and emotional support at baseline.</p><p><strong>Results: </strong>We evaluated data from 329 subjects (mean age 37.4 years, 37.1% male). Across all testing sets, gradient-boosting machines (GBM) and extreme gradient-boosting models performed best for high- versus low-resilience prediction, stratified on a median Connor-Davidson Resilience Scale-2 score of 6 (interquartile range = 5-7), with an AUC of 0.60. When predicting resilience as a continuous variable, multivariate linear models had a correlation of 0.24 (<i>P</i> = .029) and RMSE of 1.37 in the testing data. A positive psychological construct, comprised of resilience, optimism, and emotional support was also evaluated. The oblique random forest method performed best in estimating high- versus low-composite scores stratified on a median of 32.5, with an AUC of 0.65, a sensitivity of 0.60, and a specificity of 0.70.</p><p><strong>Discussion: </strong>In a <i>post hoc</i> analysis, machine learning models applied to physiological metrics collected from wearable devices had some predictive ability in identifying resilience states and a positive psychological construct.</p><p><strong>Conclusions: </strong>These findings support the further assessment of psychological characteristics from passively collected wearable data in dedicated studies.</p>","PeriodicalId":36278,"journal":{"name":"JAMIA Open","volume":null,"pages":null},"PeriodicalIF":2.5,"publicationDate":"2023-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/41/01/ooad029.PMC10152991.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9415118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
pyPheWAS Explorer: a visualization tool for exploratory analysis of phenome-disease associations. pyPheWAS Explorer:表型-疾病关联探索性分析的可视化工具。
IF 2.1
JAMIA Open Pub Date : 2023-04-03 eCollection Date: 2023-04-01 DOI: 10.1093/jamiaopen/ooad018
Cailey I Kerley, Tin Q Nguyen, Karthik Ramadass, Laurie E Cutting, Bennett A Landman, Matthew Berger
{"title":"pyPheWAS Explorer: a visualization tool for exploratory analysis of phenome-disease associations.","authors":"Cailey I Kerley, Tin Q Nguyen, Karthik Ramadass, Laurie E Cutting, Bennett A Landman, Matthew Berger","doi":"10.1093/jamiaopen/ooad018","DOIUrl":"10.1093/jamiaopen/ooad018","url":null,"abstract":"<p><strong>Objective: </strong>To enable interactive visualization of phenome-wide association studies (PheWAS) on electronic health records (EHR).</p><p><strong>Materials and methods: </strong>Current PheWAS technologies require familiarity with command-line interfaces and lack end-to-end data visualizations. pyPheWAS Explorer allows users to examine group variables, test assumptions, design PheWAS models, and evaluate results in a streamlined graphical interface.</p><p><strong>Results: </strong>A cohort of attention deficit hyperactivity disorder (ADHD) subjects and matched non-ADHD controls is examined. pyPheWAS Explorer is used to build a PheWAS model including sex and deprivation index as covariates, and the Explorer's result visualization for this model reveals known ADHD comorbidities.</p><p><strong>Discussion: </strong>pyPheWAS Explorer may be used to rapidly investigate potentially novel EHR associations. Broader applications include deployment for clinical experts and preliminary exploration tools for institutional EHR repositories.</p><p><strong>Conclusion: </strong>pyPheWAS Explorer provides a seamless graphical interface for designing, executing, and analyzing PheWAS experiments, emphasizing exploratory analysis of regression types and covariate selection.</p>","PeriodicalId":36278,"journal":{"name":"JAMIA Open","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2023-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10070037/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9311923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
#Coronavirus on TikTok: user engagement with misinformation as a potential threat to public health behavior. 抖音上的冠状病毒:用户参与错误信息是对公共卫生行为的潜在威胁。
IF 2.1
JAMIA Open Pub Date : 2023-04-01 DOI: 10.1093/jamiaopen/ooad013
Jonathan D Baghdadi, K C Coffey, Rachael Belcher, James Frisbie, Naeemul Hassan, Danielle Sim, Rena D Malik
{"title":"#Coronavirus on TikTok: user engagement with misinformation as a potential threat to public health behavior.","authors":"Jonathan D Baghdadi,&nbsp;K C Coffey,&nbsp;Rachael Belcher,&nbsp;James Frisbie,&nbsp;Naeemul Hassan,&nbsp;Danielle Sim,&nbsp;Rena D Malik","doi":"10.1093/jamiaopen/ooad013","DOIUrl":"https://doi.org/10.1093/jamiaopen/ooad013","url":null,"abstract":"<p><p>Coronavirus disease (COVID)-related misinformation is prevalent online, including on social media. The purpose of this study was to explore factors associated with user engagement with COVID-related misinformation on the social media platform, TikTok. A sample of TikTok videos associated with the hashtag #coronavirus was downloaded on September 20, 2020. Misinformation was evaluated on a scale (low, medium, and high) using a codebook developed by experts in infectious diseases. Multivariable modeling was used to evaluate factors associated with number of views and presence of user comments indicating intention to change behavior. One hundred and sixty-six TikTok videos were identified and reviewed. Moderate misinformation was present in 36 (22%) videos viewed a median of 6.8 million times (interquartile range [IQR] 3.6-16 million), and high-level misinformation was present in 11 (7%) videos viewed a median of 9.4 million times (IQR 5.1-18 million). After controlling for characteristics and content, videos containing moderate misinformation were less likely to generate a user response indicating intended behavior change. By contrast, videos containing high-level misinformation were less likely to be viewed but demonstrated a nonsignificant trend towards higher engagement among viewers. COVID-related misinformation is less frequently viewed on TikTok but more likely to engage viewers. Public health authorities can combat misinformation on social media by posting informative content of their own.</p>","PeriodicalId":36278,"journal":{"name":"JAMIA Open","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9949581/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9159279","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Accelerated curation of checkpoint inhibitor-induced colitis cases from electronic health records. 电子健康记录中检查点抑制剂诱导结肠炎病例的加速管理。
IF 2.1
JAMIA Open Pub Date : 2023-04-01 DOI: 10.1093/jamiaopen/ooad017
Protiva Rahman, Cheng Ye, Kathleen F Mittendorf, Michele Lenoue-Newton, Christine Micheel, Jan Wolber, Travis Osterman, Daniel Fabbri
{"title":"Accelerated curation of checkpoint inhibitor-induced colitis cases from electronic health records.","authors":"Protiva Rahman,&nbsp;Cheng Ye,&nbsp;Kathleen F Mittendorf,&nbsp;Michele Lenoue-Newton,&nbsp;Christine Micheel,&nbsp;Jan Wolber,&nbsp;Travis Osterman,&nbsp;Daniel Fabbri","doi":"10.1093/jamiaopen/ooad017","DOIUrl":"https://doi.org/10.1093/jamiaopen/ooad017","url":null,"abstract":"<p><strong>Objective: </strong>Automatically identifying patients at risk of immune checkpoint inhibitor (ICI)-induced colitis allows physicians to improve patientcare. However, predictive models require training data curated from electronic health records (EHR). Our objective is to automatically identify notes documenting ICI-colitis cases to accelerate data curation.</p><p><strong>Materials and methods: </strong>We present a data pipeline to automatically identify ICI-colitis from EHR notes, accelerating chart review. The pipeline relies on BERT, a state-of-the-art natural language processing (NLP) model. The first stage of the pipeline segments long notes using keywords identified through a logistic classifier and applies BERT to identify ICI-colitis notes. The next stage uses a second BERT model tuned to identify false positive notes and remove notes that were likely positive for mentioning colitis as a side-effect. The final stage further accelerates curation by highlighting the colitis-relevant portions of notes. Specifically, we use BERT's attention scores to find high-density regions describing colitis.</p><p><strong>Results: </strong>The overall pipeline identified colitis notes with 84% precision and reduced the curator note review load by 75%. The segment BERT classifier had a high recall of 0.98, which is crucial to identify the low incidence (<10%) of colitis.</p><p><strong>Discussion: </strong>Curation from EHR notes is a burdensome task, especially when the curation topic is complicated. Methods described in this work are not only useful for ICI colitis but can also be adapted for other domains.</p><p><strong>Conclusion: </strong>Our extraction pipeline reduces manual note review load and makes EHR data more accessible for research.</p>","PeriodicalId":36278,"journal":{"name":"JAMIA Open","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/4f/2b/ooad017.PMC10066800.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9616866","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Problem-oriented documentation: design and widespread adoption of a novel toolkit in a commercial electronic health record. 面向问题的文档:在商业电子健康记录中设计和广泛采用新工具包。
IF 2.1
JAMIA Open Pub Date : 2023-04-01 DOI: 10.1093/jamiaopen/ooad005
Richard L Altman, Chen-Tan Lin, Mark Earnest
{"title":"Problem-oriented documentation: design and widespread adoption of a novel toolkit in a commercial electronic health record.","authors":"Richard L Altman,&nbsp;Chen-Tan Lin,&nbsp;Mark Earnest","doi":"10.1093/jamiaopen/ooad005","DOIUrl":"https://doi.org/10.1093/jamiaopen/ooad005","url":null,"abstract":"<p><strong>Background: </strong>Problem-oriented documentation is an accepted method of note construction which facilitates clinical thought processes. However, problem-oriented documentation is challenging to put into practice using commercially available electronic health record (EHR) systems.</p><p><strong>Objective: </strong>Our goal was to create, iterate, and distribute a problem-oriented documentation toolkit within a commercial EHR that maximally supported clinicians' thinking, was intuitive to use, and produced clear documentation.</p><p><strong>Materials and methods: </strong>We used an iterative design process that stressed visual simplicity, data integration, a predictable interface, data reuse, and clinician efficiency. Creation of the problem-oriented documentation toolkit required the use of EHR-provided tools and custom programming.</p><p><strong>Results: </strong>We developed a problem-oriented documentation interface with a 3-column view showing (1) a list of visit diagnoses, (2) the current overview and assessment and plan for a selected diagnosis, and (3) a list of medications, labs, data, and orders relevant to that diagnosis. We also created a series of macros to bring information collected through the interface into clinicians' notes. This toolkit was put into a live environment in February 2019. Over the first 9 months, the custom problem-oriented documentation toolkit was used in a total of 8385 discrete visits by 28 clinicians in 13 ambulatory departments. After 9 months, the go-live education and EHR optimization teams in our health system began promoting the toolkit to new and existing users of our EHR resulting in a significantly increased uptake by outpatient clinicians. In April 2022 alone, the toolkit was used in more than 92 000 ambulatory visits by 894 users in 271 departments across our health system.</p><p><strong>Conclusions: </strong>As a health-system client of a commercial EHR, we developed and deployed a revised problem-oriented documentation toolkit that is used by clinicians more than 92 000 times a month. Key success elements include an emphasis on usability and an effective training effort.</p>","PeriodicalId":36278,"journal":{"name":"JAMIA Open","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9897179/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10672223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Understanding pediatric long COVID using a tree-based scan statistic approach: an EHR-based cohort study from the RECOVER Program. 使用基于树的扫描统计方法了解儿科长COVID:来自RECOVER计划的基于ehr的队列研究。
IF 2.1
JAMIA Open Pub Date : 2023-04-01 DOI: 10.1093/jamiaopen/ooad016
Vitaly Lorman, Suchitra Rao, Ravi Jhaveri, Abigail Case, Asuncion Mejias, Nathan M Pajor, Payal Patel, Deepika Thacker, Seuli Bose-Brill, Jason Block, Patrick C Hanley, Priya Prahalad, Yong Chen, Christopher B Forrest, L Charles Bailey, Grace M Lee, Hanieh Razzaghi
{"title":"Understanding pediatric long COVID using a tree-based scan statistic approach: an EHR-based cohort study from the RECOVER Program.","authors":"Vitaly Lorman,&nbsp;Suchitra Rao,&nbsp;Ravi Jhaveri,&nbsp;Abigail Case,&nbsp;Asuncion Mejias,&nbsp;Nathan M Pajor,&nbsp;Payal Patel,&nbsp;Deepika Thacker,&nbsp;Seuli Bose-Brill,&nbsp;Jason Block,&nbsp;Patrick C Hanley,&nbsp;Priya Prahalad,&nbsp;Yong Chen,&nbsp;Christopher B Forrest,&nbsp;L Charles Bailey,&nbsp;Grace M Lee,&nbsp;Hanieh Razzaghi","doi":"10.1093/jamiaopen/ooad016","DOIUrl":"https://doi.org/10.1093/jamiaopen/ooad016","url":null,"abstract":"<p><strong>Objectives: </strong>Post-acute sequalae of SARS-CoV-2 infection (PASC) is not well defined in pediatrics given its heterogeneity of presentation and severity in this population. The aim of this study is to use novel methods that rely on data mining approaches rather than clinical experience to detect conditions and symptoms associated with pediatric PASC.</p><p><strong>Materials and methods: </strong>We used a propensity-matched cohort design comparing children identified using the new PASC ICD10CM diagnosis code (U09.9) (<i>N</i> = 1309) to children with (<i>N</i> = 6545) and without (<i>N</i> = 6545) SARS-CoV-2 infection. We used a tree-based scan statistic to identify potential condition clusters co-occurring more frequently in cases than controls.</p><p><strong>Results: </strong>We found significant enrichment among children with PASC in cardiac, respiratory, neurologic, psychological, endocrine, gastrointestinal, and musculoskeletal systems, the most significant related to circulatory and respiratory such as dyspnea, difficulty breathing, and fatigue and malaise.</p><p><strong>Discussion: </strong>Our study addresses methodological limitations of prior studies that rely on prespecified clusters of potential PASC-associated diagnoses driven by clinician experience. Future studies are needed to identify patterns of diagnoses and their associations to derive clinical phenotypes.</p><p><strong>Conclusion: </strong>We identified multiple conditions and body systems associated with pediatric PASC. Because we rely on a data-driven approach, several new or under-reported conditions and symptoms were detected that warrant further investigation.</p>","PeriodicalId":36278,"journal":{"name":"JAMIA Open","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/ce/35/ooad016.PMC10013630.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9132702","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Correction to: Designing and implementing smart glass technology for emergency medical services: a sociotechnical perspective. 更正:为紧急医疗服务设计和实施智能玻璃技术:社会技术视角。
IF 2.1
JAMIA Open Pub Date : 2023-04-01 DOI: 10.1093/jamiaopen/ooad008
{"title":"Correction to: Designing and implementing smart glass technology for emergency medical services: a sociotechnical perspective.","authors":"","doi":"10.1093/jamiaopen/ooad008","DOIUrl":"https://doi.org/10.1093/jamiaopen/ooad008","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1093/jamiaopen/ooac113.].</p>","PeriodicalId":36278,"journal":{"name":"JAMIA Open","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9891239/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9221480","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Adopting a metaverse-based workspace to support research team collaboration: a pilot study from an academic health informatics laboratory. 采用基于元数据的工作空间来支持研究团队协作:来自学术卫生信息学实验室的一项试点研究。
IF 2.1
JAMIA Open Pub Date : 2023-04-01 DOI: 10.1093/jamiaopen/ooad010
Siyi Zhu, Scott Vennemeyer, Catherine Xu, Danny T Y Wu
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