AAS Open ResearchPub Date : 2020-12-14DOI: 10.12688/aasopenres.13181.1
S. Hameer, N. Ejigu
{"title":"A prospective review of renewable energy developments in Ethiopia","authors":"S. Hameer, N. Ejigu","doi":"10.12688/aasopenres.13181.1","DOIUrl":"https://doi.org/10.12688/aasopenres.13181.1","url":null,"abstract":"Ethiopia has a vast renewable energy potential in the context of hydro, wind, solar, and geothermal energies. The unsustainable use of biomass coupled with drought has caused a paradigm shift towards wind, geothermal, and solar energies. There have been significant strides by the Government of Ethiopia to actualize these potentials in the context of developing massive projects in these aforementioned areas with the private business sector in the goal of jettisoning the industrial base of Ethiopia in conjunction with increasing the installed power capacity from 4,300 MW to 17,346 MW by 2020. The major challenge still lies in assessing the comprehensive renewable energy resource potential of Ethiopia including the lack of local content development in the context of establishing an industrial base. There have been notable initiatives by the Government of Ethiopia to adhere to the Paris Climate Accord in conjunction with the Green Growth framework and Sustainability Development Goals. However, the top down approach of grand targets to the various regions is not the pragmatic approach to solving the Achilles heel of energy poverty. A more plausible approach is from the bottom up, whereby energy frameworks and policies are generated by conducting a needs assessment of a specified region. The appropriate technology concept needs to be reflected in the innovation aspects of renewable energy technologies. There has to be a framework of translating invention to innovation by actualizing the tripartite structure of Government, Academia, and Industry.","PeriodicalId":34179,"journal":{"name":"AAS Open Research","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41453072","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AAS Open ResearchPub Date : 2020-11-30eCollection Date: 2020-01-01DOI: 10.12688/aasopenres.13165.1
Christine F Najjuka, David Patrick Kateete, Dennis K Lodiongo, Obede Mambo, Chunderika Mocktar, William Kayondo, Hannington Baluku, Henry M Kajumbula, Sabiha Y Essack, Moses L Joloba
{"title":"Prevalence of plasmid-mediated AmpC beta-lactamases in Enterobacteria isolated from urban and rural folks in Uganda.","authors":"Christine F Najjuka, David Patrick Kateete, Dennis K Lodiongo, Obede Mambo, Chunderika Mocktar, William Kayondo, Hannington Baluku, Henry M Kajumbula, Sabiha Y Essack, Moses L Joloba","doi":"10.12688/aasopenres.13165.1","DOIUrl":"10.12688/aasopenres.13165.1","url":null,"abstract":"<p><p><b>Background</b>: AmpC beta-lactamase-producing bacteria are associated with increased resistance to third-generation cephalosporins. Here, we describe plasmid-mediated AmpC beta-lactamase-producing enterobacteria isolated from urban and rural dwellers in Uganda. <b>Methods</b>: Stool and urine from 1,448 individuals attending outpatient clinics in Kampala and two rural districts in central Uganda were processed for isolation of <i>Escherichia coli</i> and Klebsiella. Following antibiotic susceptibility testing, cefoxitin resistant isolates, and amoxicillin/clavulanate resistant but cefoxitin susceptible isolates, were tested for AmpC beta-lactamase production using the cefoxitin-cloxacillin double-disc synergy test. Carriage of plasmid-mediated AmpC beta-lactamase-encoding genes (pAmpC) and extended spectrum beta-lactamase (ESBL) encoding genes was determined by PCR. <b>Results</b>: Nine hundred and thirty <i>E. coli</i> and 55 Klebsiella were recovered from the cultured samples, yielding 985 isolates investigated (one per participant). One hundred and twenty-nine isolates (13.1%, 129/985) were AmpC beta-lactamase producers, of which 111 were molecularly characterized for pAmpC and ESBL gene carriage. pAmpC genes were detected in 60% (67/111) of the AmpC beta-lactamase producers; pAmpC genes were also detected in 18 AmpC beta-lactamase non-producers and in 13 isolates with reduced susceptibility to third-generation cephalosporins, yielding a total of 98 isolates that carried pAmpC genes. Overall, the prevalence of pAmpC genes in cefoxitin resistant and/or amoxicillin/clavulanate resistant <i>E. coli</i> and Klebsiella was 59% (93/157) and 26.1% (5/23), respectively. The overall prevalence of pAmpC-positive enterobacteria was 10% (98/985); 16.4% (45/274) in Kampala, 6.2% (25/406) Kayunga, and 9.2% (28/305) Mpigi. Ciprofloxacin use was associated with carriage of pAmpC-positive bacteria while residing in a rural district was associated with protection from carriage of pAmpC-positive bacteria. <b>Conclusion</b>: pAmpC beta-lactamase producing enterobacteria are prevalent in urban and rural dwellers in Uganda; therefore, cefoxitn should be considered during routine susceptibility testing in this setting.</p>","PeriodicalId":34179,"journal":{"name":"AAS Open Research","volume":" ","pages":"62"},"PeriodicalIF":0.0,"publicationDate":"2020-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8422338/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39436866","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AAS Open ResearchPub Date : 2020-11-26DOI: 10.12688/aasopenres.13116.2
Marta Vicente-Crespo, O. Agunbiade, J. Eyers, M. Thorogood, S. Fonn
{"title":"Institutionalizing research capacity strengthening in LMICs: A systematic review and meta-synthesis.","authors":"Marta Vicente-Crespo, O. Agunbiade, J. Eyers, M. Thorogood, S. Fonn","doi":"10.12688/aasopenres.13116.2","DOIUrl":"https://doi.org/10.12688/aasopenres.13116.2","url":null,"abstract":"Background: Evidence on effective strategies to ensure sustainability of research capacity strengthening interventions in low- and middle-income country (LMIC) institutions is lacking. This systematic review identified publications describing research capacity building programs and noted their effect, their contexts, and the mechanisms, processes and social actors employed in them. Methods: We searched online databases for the period 2011-2018. Inclusion criteria were that the publications 1) described the intervention; 2) were implemented in LMICs; 3) were based in, or relevant to, university staff or post docs; 4) aimed to improve research capacity; 5) aimed to effect change at the institutional level. Two reviewers screened titles, abstracts and full text in consecutive rounds, a third resolved disagreements. Two people extracted the data of each full text using a data extraction tool covering data relevant to our question. Results: In total 4052 citations were identified and 19 papers were included, which referred to 14 interventions. Only three interventions mentioned using a conceptual framework to develop their approach and none described using a theory of change to assess outcomes. The most frequent inputs described were some method of formal training, promotion of a research-conducive environment and establishment of research support systems. A range of outcomes were reported, most frequently an increased number of publications and proportion of staff with PhDs. When factors of success were discussed, this was attributed to a rigorous approach to implementation, adequate funding, and local buy-in. Those who mentioned sustainability linked it to availability of funds and local buy-in. The lack of a common lexicon and a framework against which to report outcomes made comparison between initiatives difficult. Conclusions: The reduced number of interventions that met the inclusion criteria suggests that programs should be well-described, evaluated systematically, and findings published so that the research capacity strengthening community can extract important lessons.","PeriodicalId":34179,"journal":{"name":"AAS Open Research","volume":"3 1","pages":"43"},"PeriodicalIF":0.0,"publicationDate":"2020-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43194318","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AAS Open ResearchPub Date : 2020-11-25eCollection Date: 2020-01-01DOI: 10.12688/aasopenres.13117.1
Mirriam Akello, Sarah Coutinho, Mary Gorrethy N-Mboowa, Victoria D Bukirwa, Agnes Natukunda, Lawrence Lubyayi, Grace Nabakooza, Stephen Cose, Alison M Elliott
{"title":"Continuous research monitoring improves the quality of research conduct and compliance among research trainees: internal evaluation of a monitoring programme.","authors":"Mirriam Akello, Sarah Coutinho, Mary Gorrethy N-Mboowa, Victoria D Bukirwa, Agnes Natukunda, Lawrence Lubyayi, Grace Nabakooza, Stephen Cose, Alison M Elliott","doi":"10.12688/aasopenres.13117.1","DOIUrl":"10.12688/aasopenres.13117.1","url":null,"abstract":"<p><p><b>Background:</b> Research site monitoring (RSM) is an effective way to ensure compliance with Good Clinical Practice (GCP). However, RSM is not offered to trainees (investigators) at African Institutions routinely. The Makerere University/Uganda Virus Research Institute Centre of Excellence in Infection and Immunity Research and Training (MUII-Plus) introduced internal monitoring to promote the quality of trainees' research projects. Here, we share our monitoring model, experiences and achievements, and challenges encountered. <b>Methods:</b> We analysed investigators' project reports from monitoring visits undertaken from April 2017 to December 2019. Monitors followed a standard checklist to review investigator site files and record forms, and toured site facilities. We planned four monitoring visits for each trainee: one at site initiation, two interim, and a closeout monitoring visit. A team of two monitors conducted the visits. <b>Results:</b> We monitored 25 out of the 26 research projects in progress between April 2017 and December 2019. Compliance with protocols, standard operating procedures, GCP, and GCLP improved with each monitoring visit. Median (IQR) compliance rate was 43% (31%, 44%) at site initiation visit for different monitoring items, 70% (54%, 90%) at the 1st interim monitoring visit, 100% (92%, 100%) at 2nd interim monitoring visit and all projects achieved 100% compliance at site closeout. All investigators had good work ethics and practice, and appropriate facilities. Initially, some investigators' files lacked essential documents, and informed consent processes needed to be improved. We realized that non-compliant investigators had not received prior training in GCP/GCLP, so we offered them this training. <b>Conclusions:</b> Routine monitoring helps identify non-compliance early and improves the quality of research. We recommend continuous internal monitoring for all research studies. Investigators conducting research involving human subjects should receive GCP/GCLP training before commencing their projects. Institutional higher degrees and research ethics committees should enforce this as a requirement for project approvals.</p>","PeriodicalId":34179,"journal":{"name":"AAS Open Research","volume":" ","pages":"57"},"PeriodicalIF":0.0,"publicationDate":"2020-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8170533/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39091630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AAS Open ResearchPub Date : 2020-11-24eCollection Date: 2020-01-01DOI: 10.12688/aasopenres.13162.1
Emilia Antonio, Moses Alobo, Marta Tufet Bayona, Kevin Marsh, Alice Norton
{"title":"Funding and COVID-19 research priorities - are the research needs for Africa being met?","authors":"Emilia Antonio, Moses Alobo, Marta Tufet Bayona, Kevin Marsh, Alice Norton","doi":"10.12688/aasopenres.13162.1","DOIUrl":"10.12688/aasopenres.13162.1","url":null,"abstract":"<p><p><b>Background</b>: Emerging data from Africa indicates remarkably low numbers of reported COVID-19 deaths despite high levels of disease transmission. However, evolution of these trends as the pandemic progresses remains unknown. More certain are the devastating long-term impacts of the pandemic on health and development evident globally. Research tailored to the unique needs of African countries is crucial. UKCDR and GloPID-R have launched a tracker of funded COVID-19 projects mapped to the WHO research priorities and research priorities of Africa and less-resourced countries and published a baseline analysis of a living systematic review (LSR) of these projects. <b>Methods</b>: In-depth analyses of the baseline LSR for COVID-19 funded research projects in Africa (as of 15th July 2020) to determine the funding landscape and alignment of the projects to research priorities of relevance to Africa. <b>Results</b>: The limited COVID-19 related research across Africa appears to be supported mainly by international funding, especially from Europe, although with notably limited funding from United States-based funders. At the time of this analysis no research projects funded by an African-based funder were identified in the tracker although there are several active funding calls geared at research in Africa and there may be funding data that has not been made publicly available. Many projects mapped to the WHO research priorities and five particular gaps in research funding were identified, namely: investigating the role of children in COVID-19 transmission; effective modes of community engagement; health systems research; communication of uncertainties surrounding mother-to-child transmission of COVID-19; and identifying ways to promote international cooperation. Capacity strengthening was identified as a dominant theme in funded research project plans. <b>Conclusions</b>: We found significantly lower funding investments in COVID-19 research in Africa compared to high-income countries, seven months into the pandemic, indicating a paucity of research targeting the research priorities of relevance to Africa.</p>","PeriodicalId":34179,"journal":{"name":"AAS Open Research","volume":" ","pages":"56"},"PeriodicalIF":0.0,"publicationDate":"2020-11-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927206/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25467637","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AAS Open ResearchPub Date : 2020-11-19eCollection Date: 2020-01-01DOI: 10.12688/aasopenres.13100.2
Justin Pulford, Susie Crossman, Sara Begg, Jessica Amegee Quach, Pierre Abomo, Taghreed El Hajj, Imelda Bates
{"title":"Strengthening research management and support services in sub-Saharan African universities and research institutions.","authors":"Justin Pulford, Susie Crossman, Sara Begg, Jessica Amegee Quach, Pierre Abomo, Taghreed El Hajj, Imelda Bates","doi":"10.12688/aasopenres.13100.2","DOIUrl":"10.12688/aasopenres.13100.2","url":null,"abstract":"<p><p><b>Background</b>: International development partners and research councils are increasingly funding research management and support (RMS) capacity strengthening initiatives in sub-Saharan Africa (SSA) as part of a broader investment in strengthening national and regional research systems. However, the evidence-base to inform RMS capacity strengthening initiatives is limited at present. This research note presents a synthesis of 28 RMS capacity assessments completed in 25 universities/research institutions from across 15 SSA countries between 2014 and 2018. <b>Methods</b>: All 28 capacity assessments were completed following a standardised methodology consisting of semi-structured interviews conducted with research and research support staff at the respective institution as well as document reviews and observation of onsite facilities. Data were extracted from the 28 reports detailing the findings of each assessment according to a framework synthesis approach. <b>Results</b>: In total, 13 distinct capacity gap categories emerged from across the 28 RMS capacity assessment reports. Almost all the institutions assessed faced multiple gaps in RMS capacity within and across each of these 13 categories. The 13 categories were not independent of each other and were often closely inter-connected. Commonalities were also evident across multiple categories, the two most obvious of which were severe fiscal constraints and the often-complex bureaucracy of the institutional operating environment. <b>Conclusions</b>: The synthesis findings reveal multiple, commonly shared RMS capacity gaps in universities and research institutions across SSA. No single intervention type, or focus, would be sufficient to strengthen capacity across all 13 areas; rather, what is needed to facilitate a significant shift in RMS capacity within such SSA universities and research institutions is a combination of interventions, consisting of differing levels of cost and complexity, variously led (or supported) by both internal and external actors.</p>","PeriodicalId":34179,"journal":{"name":"AAS Open Research","volume":" ","pages":"31"},"PeriodicalIF":0.0,"publicationDate":"2020-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7780342/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38820349","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AAS Open ResearchPub Date : 2020-11-03DOI: 10.12688/aasopenres.13154.1
A. Isawumi, Jacob K. Donkor, L. Mosi
{"title":"In vitro inhibitory effects of commercial antiseptics and disinfectants on foodborne and environmental bacterial strains","authors":"A. Isawumi, Jacob K. Donkor, L. Mosi","doi":"10.12688/aasopenres.13154.1","DOIUrl":"https://doi.org/10.12688/aasopenres.13154.1","url":null,"abstract":"Background: Antibacterial agents, including disinfectants and antiseptics are commonly used to reduce bacterial loads. As they have a broad-spectrum of activity against bacteria, function either as bactericidal or bacteriostatic agents. While bacterial antimicrobial resistance is increasing, disinfectants and antiseptics are still relevant antibacterial agents. Methods: This study investigated the in vitro inhibitory effects of commonly used antiseptics and disinfectants. Using standard disc diffusion methods, selected common household antibacterial agents were tested on resistant Staphylococcus aureus isolated from hospital environment and foodborne Escherichia coli and Bacillus species. Results: The study showed that the selected antibacterial agents were effective against the antibiotic resistant bacteria with appreciable zone of inhibition relative to the standard controls used. Conclusions: Though bacteria are consistently developing resistance to available antibiotics, disinfectants still inhibit bacterial growth and survival with considerable public health importance.","PeriodicalId":34179,"journal":{"name":"AAS Open Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49110280","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AAS Open ResearchPub Date : 2020-10-15DOI: 10.12688/aasopenres.13101.1
Phiona Nansubuga, Arthur Kavuma Mwanje, S. Kizito, Daniel Obua, Cornelius Sendagire, A. Kwizera
{"title":"The prevalence, incidence and mortality associated with intra-abdominal hypertension among patients in intensive care units of a low-income country: a cohort study","authors":"Phiona Nansubuga, Arthur Kavuma Mwanje, S. Kizito, Daniel Obua, Cornelius Sendagire, A. Kwizera","doi":"10.12688/aasopenres.13101.1","DOIUrl":"https://doi.org/10.12688/aasopenres.13101.1","url":null,"abstract":"Background: Intra-abdominal hypertension (IAH) is sustained increase in intra-abdominal pressure (IAP) ≥12 mmHg in adults and ≥10 mmHg in children. IAH has been noted to be associated with increased morbidity and mortality among critically ill patients. Measurement of IAP is common among at risk patients in the developed world. However, it has not received due attention in the majority of intensive care units (ICUs) in low-income countries, Uganda being one of these. This is evidenced by paucity of data and lack of protocols from the Ugandan Ministry of Health. This multi-center study was thus conducted to assess the prevalence, incidence and mortality associated with IAH among patients admitted to Ugandan ICUs.Methods:A multi-center prospective cohort study was conducted from September 2017 to February 2018 at three ICUs in Uganda. We consecutively enrolled 126 patients into the study. IAP was measured using the Harrahil manometer technique. Categorical variables were analyzed using the Chi square test and continuous variables analyzed using the t-test and Man Whitney test. The prevalence and incidence were determined using proportions and mortality was determined using survival analysis.Results:The median age was 33 years (26-48.5) for the patients without IAH and 42 years (29-55) for those with IAH. The majority of the patients were male and 9.6% of the patients were below 18 years. The prevalence of IAH was 62.7 (CI 54.1-71.3), whereas the 24 hour and 72 hour incidence of IAH was 9.3% (CI 1.3-17.2) and 14.3 % (CI 4.1-24.4), respectively. Mortality was higher in patients with IAH compared to those without (p-value 0.003 and 0.028, mean and maximum IAP, respectively). Conclusion:We found a high prevalence and incidence of IAH among critically ill patients, associated with a high mortality. Routine screening for IAH can preempt management strategies to mitigate this.","PeriodicalId":34179,"journal":{"name":"AAS Open Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49394312","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AAS Open ResearchPub Date : 2020-09-28eCollection Date: 2020-01-01DOI: 10.12688/aasopenres.13107.1
Dorcas Maruapula, Iain J MacLeod, Sikhulile Moyo, Rosemary Musonda, Kaelo Seatla, Kesaobaka Molebatsi, Melvin Leteane, Max Essex, Simani Gaseitsiwe, Christopher F Rowley
{"title":"Use of a mutation-specific genotyping method to assess for HIV-1 drug resistance in antiretroviral-naïve HIV-1 Subtype C-infected patients in Botswana.","authors":"Dorcas Maruapula, Iain J MacLeod, Sikhulile Moyo, Rosemary Musonda, Kaelo Seatla, Kesaobaka Molebatsi, Melvin Leteane, Max Essex, Simani Gaseitsiwe, Christopher F Rowley","doi":"10.12688/aasopenres.13107.1","DOIUrl":"10.12688/aasopenres.13107.1","url":null,"abstract":"<p><p><b>Background:</b> HIV-1 drug resistance poses a major threat to the success of antiretroviral therapy. The high costs of available HIV drug resistance assays prohibit their routine usage in resource-limited settings. Pan-degenerate amplification and adaptation (PANDAA), a focused genotyping approach based on quantitative PCR (qPCR), promises a fast and cost-effective way to detect HIV drug resistance mutations (HIVDRMs). Given the high cost of current genotyping methods, we sought to use PANDAA for screening key HIVDRMs in antiretroviral-naïve individuals at codons 103, 106 and 184 of the HIV-1 reverse transcriptase gene. Mutations selected at these positions have been shown to be the most common driver mutations in treatment failure. <b>Methods:</b> A total of 103 samples from antiretroviral-naïve individuals previously genotyped by Sanger population sequencing were used to assess and verify the performance of PANDAA. PANDAA samples were run on the ABI 7500 Sequence Detection System to genotype the K103N, V106M and M184V HIVDRMs. In addition, the cost per sample and reaction times were compared. <b>Results:</b> Sanger population sequencing and PANDAA detected K103N mutation in three (2.9%) out of 103 participants. There was no evidence of baseline V106M and M184V mutations observed in our study. To genotype the six HIVDRMs it costs approximately 40 USD using PANDAA, while the reagents cost per test for Sanger population sequencing is approximately 100 USD per sample. PANDAA was performed quicker compared to Sanger sequencing, 2 hours for PANDAA versus 15 hours for Sanger sequencing. <b>Conclusion:</b> The performance of PANDAA and Sanger population sequencing demonstrated complete concordance. PANDAA could improve patient management by providing quick and relatively cheap access to drug-resistance information.</p>","PeriodicalId":34179,"journal":{"name":"AAS Open Research","volume":" ","pages":"50"},"PeriodicalIF":0.0,"publicationDate":"2020-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8112461/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39032660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
AAS Open ResearchPub Date : 2020-09-14DOI: 10.12688/AASOPENRES.13121.1
F. Cherop, M. Korir, Vincent Bagire, J. Wachira
{"title":"Patient loyalty to HIV care in an HIV facility in Eldoret, Kenya: A mediated mediation","authors":"F. Cherop, M. Korir, Vincent Bagire, J. Wachira","doi":"10.12688/AASOPENRES.13121.1","DOIUrl":"https://doi.org/10.12688/AASOPENRES.13121.1","url":null,"abstract":"Patient loyalty is the continuous commitment and engagement in care where patients can improve and sustain quality of life through continuous use of medical care. Identifying strengths and weaknesses in providing excellent quality care is a key measure of success of healthcare professionals and hospital management. However, few studies have examined patient loyalty from a strategic leadership perspective within HIV health care systems. The purpose of this study is to determine how patient loyalty to HIV care is influenced by multiple factors in a healthcare system environment. The study employs a mixed-methods approach guided by the complexity theory and the theory of planned behavior. A total of 444 surveys with (50 healthcare providers and 394 adult HIV-infected patients) currently on antiretroviral drugs, as well as 22 in-depth interviews with healthcare providers will be conducted. The study will be done at AMPATH Eldoret Kenya. We will use stratified proportionate and census sampling methods to select study participants for the survey while purposive and convenient sampling techniques will be used for in-depth interviews. Structured questionnaires and interviewer guides will guide data collection. Quantitative data analysis will entail hierarchical regression to test direct effects while multiple regression will test the mediation effects using the Hayes PROCESS Model No.6 in SPSS. Qualitative data analysis will be conducted using a thematic analytical method.","PeriodicalId":34179,"journal":{"name":"AAS Open Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48154206","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}