Kai Dührkop, M. Ludwig, Marvin Meusel, Sebastian Böcker
{"title":"Faster Mass Decomposition","authors":"Kai Dührkop, M. Ludwig, Marvin Meusel, Sebastian Böcker","doi":"10.1007/978-3-642-40453-5_5","DOIUrl":"https://doi.org/10.1007/978-3-642-40453-5_5","url":null,"abstract":"","PeriodicalId":329847,"journal":{"name":"Workshop on Algorithms in Bioinformatics","volume":"27 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130553776","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Viraj Deshpande, Eric D. K. Fung, Son K. Pham, V. Bafna
{"title":"Cerulean: A Hybrid Assembly Using High Throughput Short and Long Reads","authors":"Viraj Deshpande, Eric D. K. Fung, Son K. Pham, V. Bafna","doi":"10.1007/978-3-642-40453-5_27","DOIUrl":"https://doi.org/10.1007/978-3-642-40453-5_27","url":null,"abstract":"","PeriodicalId":329847,"journal":{"name":"Workshop on Algorithms in Bioinformatics","volume":"5 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122240614","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Towards Reliable Automatic Protein Structure Alignment","authors":"Xuefeng Cui, S. Li, D. Bu, Ming Li","doi":"10.1007/978-3-642-40453-5_3","DOIUrl":"https://doi.org/10.1007/978-3-642-40453-5_3","url":null,"abstract":"","PeriodicalId":329847,"journal":{"name":"Workshop on Algorithms in Bioinformatics","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116858621","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Darya Filippova, Robert Patro, Geet Duggal, Carl Kingsford
{"title":"Multiscale Identification of Topological Domains in Chromatin","authors":"Darya Filippova, Robert Patro, Geet Duggal, Carl Kingsford","doi":"10.1007/978-3-642-40453-5_23","DOIUrl":"https://doi.org/10.1007/978-3-642-40453-5_23","url":null,"abstract":"","PeriodicalId":329847,"journal":{"name":"Workshop on Algorithms in Bioinformatics","volume":"12 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114407389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"On the Matrix Median Problem","authors":"J. P. P. Zanetti, Priscila Biller, J. Meidanis","doi":"10.1007/978-3-642-40453-5_18","DOIUrl":"https://doi.org/10.1007/978-3-642-40453-5_18","url":null,"abstract":"","PeriodicalId":329847,"journal":{"name":"Workshop on Algorithms in Bioinformatics","volume":"64 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122043815","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Modeling Intratumor Gene Copy Number Heterogeneity Using Fluorescence in Situ Hybridization Data","authors":"Charalampos E. Tsourakakis","doi":"10.1007/978-3-642-40453-5_24","DOIUrl":"https://doi.org/10.1007/978-3-642-40453-5_24","url":null,"abstract":"","PeriodicalId":329847,"journal":{"name":"Workshop on Algorithms in Bioinformatics","volume":"53 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129416902","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Detecting Superbubbles in Assembly Graphs","authors":"Taku Onodera, K. Sadakane, T. Shibuya","doi":"10.1007/978-3-642-40453-5_26","DOIUrl":"https://doi.org/10.1007/978-3-642-40453-5_26","url":null,"abstract":"","PeriodicalId":329847,"journal":{"name":"Workshop on Algorithms in Bioinformatics","volume":"4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130756926","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Phylogenetic Analysis of Cell Types Using Histone Modifications","authors":"N. Nair, Yu Lin, P. Bucher, Bernard M. E. Moret","doi":"10.1007/978-3-642-40453-5_25","DOIUrl":"https://doi.org/10.1007/978-3-642-40453-5_25","url":null,"abstract":"","PeriodicalId":329847,"journal":{"name":"Workshop on Algorithms in Bioinformatics","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125514319","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Unifying Parsimonious Tree Reconciliation","authors":"Nicolas Wieseke, Matthias Bernt, M. Middendorf","doi":"10.1007/978-3-642-40453-5_16","DOIUrl":"https://doi.org/10.1007/978-3-642-40453-5_16","url":null,"abstract":"","PeriodicalId":329847,"journal":{"name":"Workshop on Algorithms in Bioinformatics","volume":"42 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129794353","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
I. Minkin, Anand Patel, M. Kolmogorov, Nikolay Vyahhi, Son K. Pham
{"title":"Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes","authors":"I. Minkin, Anand Patel, M. Kolmogorov, Nikolay Vyahhi, Son K. Pham","doi":"10.1007/978-3-642-40453-5_17","DOIUrl":"https://doi.org/10.1007/978-3-642-40453-5_17","url":null,"abstract":"","PeriodicalId":329847,"journal":{"name":"Workshop on Algorithms in Bioinformatics","volume":"2012 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127384938","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}