European Journal of Medicinal Chemistry最新文献

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Structure-based virtual screening identifies potent CD28 inhibitors that suppress T cell co-stimulation in cellular and mucosal models 基于结构的虚拟筛选识别细胞和粘膜模型中抑制T细胞共刺激的有效CD28抑制剂
IF 5.9 2区 医学
European Journal of Medicinal Chemistry Pub Date : 2025-09-21 DOI: 10.1016/j.ejmech.2025.118194
Saurabh Upadhyay , Valerij Talagayev , Sungwoo Cho , Gerhard Wolber , Moustafa Gabr
{"title":"Structure-based virtual screening identifies potent CD28 inhibitors that suppress T cell co-stimulation in cellular and mucosal models","authors":"Saurabh Upadhyay ,&nbsp;Valerij Talagayev ,&nbsp;Sungwoo Cho ,&nbsp;Gerhard Wolber ,&nbsp;Moustafa Gabr","doi":"10.1016/j.ejmech.2025.118194","DOIUrl":"10.1016/j.ejmech.2025.118194","url":null,"abstract":"<div><div>Resistance to immune checkpoint inhibitors targeting PD-1 and CTLA-4 remains a major barrier to effective cancer immunotherapy, often arising from compensatory CD28-mediated costimulation. Here, we report the discovery and biological validation of small molecule CD28 antagonists identified through a structure-based virtual screening pipeline. Molecular dynamics and Pyrod-based water mapping revealed a cryptic lipophilic canyon on CD28 enriched in druggable features. A pharmacophore-based screen of over 7 million compounds yielded several candidates, of which compound <strong>22VS</strong> emerged as a lead based on biophysical binding (TRIC and MST), structure–activity insights, and functional inhibition in ELISA and NanoBit assays. <strong>22VS</strong> demonstrated potent and selective blockade of CD28–B7 interactions, with submicromolar IC<sub>50</sub> values in cellular assays and minimal cytotoxicity. Importantly, <strong>22VS</strong> suppressed proinflammatory cytokines (IFN-γ, IL-2, TNF-α) in human tumor–PBMC and mucosal–PBMC co-culture systems, closely mimicking the biological activity of the CD28-targeting biologic FR104. Pharmacokinetic profiling revealed favorable solubility, metabolic stability, low CYP inhibition, and excellent safety in human fibroblasts. These findings establish CD28 as a druggable immunotherapeutic checkpoint and validate <strong>22VS</strong> as a promising lead candidate for modulating T cell responses. This small-molecule approach offers a viable pharmacological strategy to overcome resistance mechanisms associated with PD-1 and CTLA-4 blockade, with implications for autoimmune disease, transplantation, and cancer immunotherapy.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"300 ","pages":"Article 118194"},"PeriodicalIF":5.9,"publicationDate":"2025-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145093649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synthesis, biological evaluation, and mechanistic investigation of tetrahydrothieno[2,3-c]pyridine derivatives as anti-Gram-negative bacterial agents 四氢噻吩[2,3-c]吡啶衍生物抗革兰氏阴性菌的合成、生物学评价及机理研究
IF 5.9 2区 医学
European Journal of Medicinal Chemistry Pub Date : 2025-09-20 DOI: 10.1016/j.ejmech.2025.118179
Cong Bian , Wenjing Shi , Shuwen Zhao , Bingchen Li , Min Yuan , Peng Gao , Yan Li , Shuyi Si , Xiaofang Chen
{"title":"Synthesis, biological evaluation, and mechanistic investigation of tetrahydrothieno[2,3-c]pyridine derivatives as anti-Gram-negative bacterial agents","authors":"Cong Bian ,&nbsp;Wenjing Shi ,&nbsp;Shuwen Zhao ,&nbsp;Bingchen Li ,&nbsp;Min Yuan ,&nbsp;Peng Gao ,&nbsp;Yan Li ,&nbsp;Shuyi Si ,&nbsp;Xiaofang Chen","doi":"10.1016/j.ejmech.2025.118179","DOIUrl":"10.1016/j.ejmech.2025.118179","url":null,"abstract":"<div><div>The escalating threat of drug-resistant Gram-negative bacterial infections necessitates urgent development of novel therapeutics. We reported the design, synthesis, and evaluation of a series of tetrahydrothieno[2,3-<em>c</em>]pyridine derivatives derived from the hit compound IMB-H4. Five analogues demonstrated potent <em>in vitro</em> activity against <em>Escherichia coli</em> (<em>E. coli</em> ATCC 25922), <em>Acinetobacter baumannii</em> (<em>A. baumannii</em> ATCC 19606), <em>Klebsiella pneumoniae</em> (<em>K. pneumoniae</em> BAA 1706), and the clinical isolates of multidrug-resistant (MDR). The optimized compound <strong>5</strong> demonstrated 2- to 8-fold enhanced potency with reduced cytotoxicity, yielding a superior selectivity index (SI) than IMB-H4, and could significantly prolong survival time and improve survival rate of <em>E. coli-</em>infected <em>G. mellonella</em> larvae and ICR mice <em>in vivo</em>. Compound <strong>5</strong> induced outer membrane (OM) damage and the formation of filamentous cells in <em>E. coli</em>. Mechanistic studies revealed that it could bind to the unfolded BamA protein to inhibit its interaction with BamD, it could also bind to the folded BamA protein to affect its function, thereby affecting the assembly of outer membrane proteins (OMPs) on OM. In addition, compound <strong>5</strong> also perturbed the integrity of cell walls, correlating with filamentous morphology, though the precise target(s) remain unidentified. Collectively, this series of derivatives represents a promising new class of multi-target antibiotics with a unique polypharmacological profile, worth further development.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"301 ","pages":"Article 118179"},"PeriodicalIF":5.9,"publicationDate":"2025-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145093652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
From antiretrovirals to curative therapies: Current developments in HIV treatment and prevention 从抗逆转录病毒药物到治愈性疗法:艾滋病毒治疗和预防的最新进展
IF 5.9 2区 医学
European Journal of Medicinal Chemistry Pub Date : 2025-09-20 DOI: 10.1016/j.ejmech.2025.118190
Poonam Mundlia , Akanksha Sharma , Jatinder Kaur , Bhawna Chaubey , Pavitra Ranawat , Vikas Sood , Ankur Pandey , Gurpal Singh , Ravi Pratap Barnwal
{"title":"From antiretrovirals to curative therapies: Current developments in HIV treatment and prevention","authors":"Poonam Mundlia ,&nbsp;Akanksha Sharma ,&nbsp;Jatinder Kaur ,&nbsp;Bhawna Chaubey ,&nbsp;Pavitra Ranawat ,&nbsp;Vikas Sood ,&nbsp;Ankur Pandey ,&nbsp;Gurpal Singh ,&nbsp;Ravi Pratap Barnwal","doi":"10.1016/j.ejmech.2025.118190","DOIUrl":"10.1016/j.ejmech.2025.118190","url":null,"abstract":"<div><div>Human immunodeficiency virus (HIV) is a major global health challenge. Antiretroviral therapy (ART) provides effective viral suppression but falls short of achieving a definitive cure. Lifelong ART is further complicated by drug-related toxicities, adherence barriers and the persistence of latent viral reservoirs. In recent years, innovative therapeutic strategies have emerged to address these limitations. Gene-based approaches, including CRISPR/Cas9 editing, stem cell transplantation, and latency-reversing or latency-silencing strategies are being explored to directly target and eliminate viral reservoirs. Parallel efforts in immunotherapy, therapeutic and preventive vaccines, pre-exposure prophylaxis (PrEP), and treatment as prevention (TasP) are expanding the preventive and therapeutic strategies. This review summarizes the evolution of HIV therapies, highlights recent advances across these diverse approaches and discusses their potential to reshape future management. We also outline current challenges and research priorities, particularly regarding reservoir eradication, safe and scalable delivery platforms, and ensuring accessibility in resource-limited settings. These innovations together offer promising avenues toward functional cure strategies and contribute to the global effort to end the HIV epidemic by 2030.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"300 ","pages":"Article 118190"},"PeriodicalIF":5.9,"publicationDate":"2025-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145093651","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Design, synthesis, and biological evaluation of arctigenin derivatives as novel GPX4 inhibitors in colorectal cancer cells 结直肠癌细胞中新型GPX4抑制剂牛蒡子素衍生物的设计、合成和生物学评价
IF 5.9 2区 医学
European Journal of Medicinal Chemistry Pub Date : 2025-09-19 DOI: 10.1016/j.ejmech.2025.118181
Yu-Xia Wang, Ling Zhu, Lu Zhang, Feng Bao, Bill Zhereng Liao, Ya-Lin Li, Ling-Yi Kong, Jian-Guang Luo, Chen Chen
{"title":"Design, synthesis, and biological evaluation of arctigenin derivatives as novel GPX4 inhibitors in colorectal cancer cells","authors":"Yu-Xia Wang,&nbsp;Ling Zhu,&nbsp;Lu Zhang,&nbsp;Feng Bao,&nbsp;Bill Zhereng Liao,&nbsp;Ya-Lin Li,&nbsp;Ling-Yi Kong,&nbsp;Jian-Guang Luo,&nbsp;Chen Chen","doi":"10.1016/j.ejmech.2025.118181","DOIUrl":"10.1016/j.ejmech.2025.118181","url":null,"abstract":"<div><div>Glutathione peroxidase 4 (GPX4), a critical regulator of ferroptosis, has emerged as an attractive therapeutic target for cancer therapy. Leveraging the therapeutic potential of this target, we rationally designed and synthesized 25 novel arctigenin derivatives through structure-activity relationship (SAR) studies. Remarkably, compound <strong>W25</strong> displayed the most potent antitumor efficacy against HCT-116 colorectal cancer cells, surpassing the activity of the parent compound arctigenin. Flow cytometry analysis revealed that <strong>W25</strong> increased lipid reactive oxygen species (ROS) levels by 4.5 times in HCT-116 cells. Notably, ferroptosis inhibitors (ferrostatin-1 and deferoxamine mesylate) could reverse the increase of lipid ROS induced by <strong>W25</strong>, suggesting that <strong>W25</strong> could selectively trigger ferroptosis in HCT-116 cells. Meanwhile, <strong>W25</strong> suppressed the level of glutathione (GSH) and increased the level of malondialdehyde (MDA) in HCT-116 cells. More importantly, the Western blotting results displayed that <strong>W25</strong> inhibited the protein expression of GPX4 in a dose-dependent manner, while it had no significant effect on other ferroptosis-related proteins (such as FSP1, FTH1, and SLC7A11). Enzyme activity data also showed that <strong>W25</strong> could suppress the activity of GPX4. Furthermore, MG132 (a proteasome inhibitor) reversed the inhibition of GPX4 protein expression by <strong>W25</strong>. Correspondingly, the immunoprecipitation assay also showed that <strong>W25</strong> promoted the ubiquitination level of GPX4, revealing that <strong>W25</strong> induced ubiquitination-dependent proteasomal degradation of GPX4. These results suggest that <strong>W25</strong> is a novel ferroptosis inducer against colorectal cancer through the inhibition of GPX4.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"300 ","pages":"Article 118181"},"PeriodicalIF":5.9,"publicationDate":"2025-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145089646","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Research and development of natural product Salidroside: Pharmacology, total synthesis and structural modifications 天然产物红景天苷的研究与开发:药理学、全合成和结构修饰
IF 5.9 2区 医学
European Journal of Medicinal Chemistry Pub Date : 2025-09-19 DOI: 10.1016/j.ejmech.2025.118186
Mingjing Zhao , Nan Wu , Yan Piao , Chonghao Sun, Junyi Jin, Chengyu Cui, Peng Du, Xiongjie Yin, Lili Jin, Changhao Zhang
{"title":"Research and development of natural product Salidroside: Pharmacology, total synthesis and structural modifications","authors":"Mingjing Zhao ,&nbsp;Nan Wu ,&nbsp;Yan Piao ,&nbsp;Chonghao Sun,&nbsp;Junyi Jin,&nbsp;Chengyu Cui,&nbsp;Peng Du,&nbsp;Xiongjie Yin,&nbsp;Lili Jin,&nbsp;Changhao Zhang","doi":"10.1016/j.ejmech.2025.118186","DOIUrl":"10.1016/j.ejmech.2025.118186","url":null,"abstract":"<div><div>Salidroside (<strong>SAL</strong>) is a glycoside compound with good biological activity, which has multi-target therapeutic potential for various disease. It can significantly regulate various receptors, inflammatory mediators and signaling pathways. However, due to the problems of low content of natural sources, difficulty in isolation and purification and poor bioavailability, <strong>SAL</strong> cannot be widely used in clinical treatment. This article reviews the chemical total synthesis methods and the typical pharmacological effects of <strong>SAL</strong>, mainly about anti-tumor, anti-hypoxia and anti-sepsis fields. In addition, this article focuses on summarizing the research progress on the structural modification of <strong>SAL</strong>. Summarized the structure-activity relationship of <strong>SAL</strong> and its derivatives. These contents can enhance scholars’ understanding of the current research progress on <strong>SAL</strong>, overcome the limitations which <strong>SAL</strong> is faced, and provide constructive insights for further development of new drugs based on <strong>SAL</strong>.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"300 ","pages":"Article 118186"},"PeriodicalIF":5.9,"publicationDate":"2025-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145089707","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Discovery of novel benzylaniline derivatives containing chloroacetamide as GPX4 inhibitors with potential efficacy in triple-negative breast cancer 发现含氯乙酰胺的新型苯苯胺衍生物作为GPX4抑制剂,对三阴性乳腺癌有潜在疗效
IF 5.9 2区 医学
European Journal of Medicinal Chemistry Pub Date : 2025-09-19 DOI: 10.1016/j.ejmech.2025.118189
Mengdan Ning, Bo Zhao, Tianjie Cao, Jiaxing Wu, Chao Zhang, Lingyi Kong, Jianguang Luo, Yong Yin
{"title":"Discovery of novel benzylaniline derivatives containing chloroacetamide as GPX4 inhibitors with potential efficacy in triple-negative breast cancer","authors":"Mengdan Ning,&nbsp;Bo Zhao,&nbsp;Tianjie Cao,&nbsp;Jiaxing Wu,&nbsp;Chao Zhang,&nbsp;Lingyi Kong,&nbsp;Jianguang Luo,&nbsp;Yong Yin","doi":"10.1016/j.ejmech.2025.118189","DOIUrl":"10.1016/j.ejmech.2025.118189","url":null,"abstract":"<div><div>Studies have found that induction of ferroptosis in tumors may become a new treatment method. Glutathione peroxidase 4 (GPX4) has become a promising target for cancer treatment by inducing ferroptosis, of which covalent GPX4 inhibitors are the most widely studied class so far. A series of GPX4 inhibitors containing chloroacetyl warheads were designed and synthesized, and the antiproliferative activity was evaluated using six tumor cell lines. Among them, compound <strong>Y19</strong> showed strong anti-proliferative activity with high ferroptosis selectivity against MDA-MB-231 cells with IC<sub>50</sub> value of 21 nM. Moreover, <strong>Y19</strong> effectively inhibited GPX4 activity and molecular docking revealed that <strong>Y19</strong> may covalently bind to Sec 46 site of GPX4. In addition, compound <strong>Y19</strong> caused intracellular Fe<sup>2+</sup> accumulation, leading to increased levels of lipid peroxides (LPOs) and induction of ferroptosis. This was followed by the discovery that <strong>Y19</strong> induced ferroptosis by LPOs and reactive oxygen species (ROS) production leading to DNA damage. In vivo pharmacodynamic evaluation demonstrated that <strong>Y19</strong> exhibited superior antitumor efficacy compared to RSL3 at an equivalent dose, achieving a tumor growth inhibition (TGI) rate of 72.53 % at 10 mg/kg in the MDA-MB-231 xenograft model, with no significant toxicity observed. This provides structurally diverse tool compounds to reveal the basic biology of GPX4 as well as to explore potential efficacy with the treatment of cancer by inducing ferroptosis.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"300 ","pages":"Article 118189"},"PeriodicalIF":5.9,"publicationDate":"2025-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145089648","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Corrigendum to “Discovery, structural modification and structure-activity relationship study of Echinulin derivatives as tyrosyl-DNA phosphodiesterase 1 inhibitors and their potential antitumor activity” [Eur. J. Med. Chem. 298 (2025) 118040] “紫锥菊素衍生物酪氨酸- dna磷酸二酯酶1抑制剂的发现、结构修饰和构效关系研究及其潜在的抗肿瘤活性”的勘误表[欧洲]。医学化学。298 (2025)118040]
IF 6.7 2区 医学
European Journal of Medicinal Chemistry Pub Date : 2025-09-19 DOI: 10.1016/j.ejmech.2025.118101
Chuan-Sheng Yao, Jiaqi Zhu, Xiang Gao, Ao Chen, Yue-Wen Li, Wen-Ya Liu, Li-Shuang Guo, Yong-Chun Wu, Cui-Xian Zhang, Xi-Xin He, Lin-Kun An
{"title":"Corrigendum to “Discovery, structural modification and structure-activity relationship study of Echinulin derivatives as tyrosyl-DNA phosphodiesterase 1 inhibitors and their potential antitumor activity” [Eur. J. Med. Chem. 298 (2025) 118040]","authors":"Chuan-Sheng Yao, Jiaqi Zhu, Xiang Gao, Ao Chen, Yue-Wen Li, Wen-Ya Liu, Li-Shuang Guo, Yong-Chun Wu, Cui-Xian Zhang, Xi-Xin He, Lin-Kun An","doi":"10.1016/j.ejmech.2025.118101","DOIUrl":"https://doi.org/10.1016/j.ejmech.2025.118101","url":null,"abstract":"The authors regret that the publication shows that some compounds’ structures are incorrect because of text editing reason in <strong>Tables 1–3</strong>, including compounds <strong>9–16</strong> in <strong>Table 1</strong>, compounds <strong>17–18</strong>, <strong>29–33</strong>, <strong>35–54</strong>, <strong>56–59</strong> in <strong>Table 2</strong>, and compounds <strong>62–67</strong> in <strong>Table 3</strong>. Corrected <strong>Tables 1–3</strong> are shown below.","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"120 1","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145089645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
(N)-Methanocarba-adenosines as monoamine transporter allosteric inhibitors: Extended N6 groups for bitopic stabilization (N)-甲醇碳-腺苷作为单胺转运体变构抑制剂:扩展的N6基团用于双视稳定
IF 5.9 2区 医学
European Journal of Medicinal Chemistry Pub Date : 2025-09-19 DOI: 10.1016/j.ejmech.2025.118167
Dilip K. Tosh , Matteo Pavan , Laura B. Kozell , Amy J. Eshleman , Jennifer L. Schmachtenberg , Katherine M. Wolfrum , William E. Schutzer , Atheir I. Abbas , Kenneth A. Jacobson
{"title":"(N)-Methanocarba-adenosines as monoamine transporter allosteric inhibitors: Extended N6 groups for bitopic stabilization","authors":"Dilip K. Tosh ,&nbsp;Matteo Pavan ,&nbsp;Laura B. Kozell ,&nbsp;Amy J. Eshleman ,&nbsp;Jennifer L. Schmachtenberg ,&nbsp;Katherine M. Wolfrum ,&nbsp;William E. Schutzer ,&nbsp;Atheir I. Abbas ,&nbsp;Kenneth A. Jacobson","doi":"10.1016/j.ejmech.2025.118167","DOIUrl":"10.1016/j.ejmech.2025.118167","url":null,"abstract":"<div><div>A human dopamine transporter (DAT) cryo-EM structure was recently reported, as stabilized by an allosteric inhibitor, i.e. rigid nucleoside MRS7292 <strong>1</strong>, a tropane orthosteric inhibitor and Zn<sup>2+</sup>. We have synthesized multiple North (N)-methanocarba-adenosine analogues of <strong>1</strong>, with <em>N</em><sup>6</sup>, C2 and 4′ modifications to examine their effects on DAT radioligand binding (either enhancement or inhibition) and at the norepinephrine (NET) and serotonin (SERT) transporters (generally inhibition). Small <em>N</em><sup>6</sup> groups provided the most pronounced DAT enhancement (≥500 % at 10 μM for <em>N</em><sup>6</sup>-methyl <strong>2</strong> and <em>N</em><sup>6</sup>-cyclopropyl <strong>8</strong> 5′-ethyl esters, and <em>N</em><sup>6</sup>-methyl-4′-cyanomethyl <strong>44</strong> analogues). Various <em>N</em><sup>6</sup>-(ω-phenyl-alkyl) groups caused binding inhibition and compensated for the removal of stabilizing interactions shown in the <strong>1</strong>-DAT structure, e.g. an <em>N</em>7 H-bond, by accessing a previously uncharacterized DAT distal binding region. The optimal chain length was five methylenes for bitopic <em>N</em><sup>6</sup>-(ω-phenyl-alkyl) derivatives, e.g. <strong>16</strong> and <strong>31</strong>, having favored 5′-ethyl ester (but not 4′-cyanomethyl) and 2-(arylethynyl) groups. Surprisingly, the previously noted reduced DAT activity with a 2-iodo group, could be compensated by <em>N</em><sup>6</sup>-(ω-phenyl-alkyl) groups. <em>N</em><sup>6</sup>-(6-Phenylhexyl)-2-iodo compounds, <strong>53</strong> (5′-hydroxy, K<sub>i</sub> 0.89 μM, pan-inhibitor) and <strong>54</strong> (4′-cyanomethyl, K<sub>i</sub> 0.40 μM), inhibited DAT binding. Chiral, branched <em>N</em><sup>6</sup> groups displayed binding stereoselectivity. Key nucleosides were docked to outward-facing hDAT cryo-EM structures. Molecular dynamics simulation predicted π-π interactions of the <em>N</em><sup>6</sup>-(ω-phenyl-alkyl) substituent and aromatic side chains of F208<sup>EL2</sup> and H375<sup>EL4</sup> (aromatic conserved at NET) to define a preferred binding mode for the extended chain. Thus, we characterized the transporter SAR of this series, either enhancement or inhibition of orthosteric radioligand binding, and transport inhibition, and with DAT structural predictions.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"301 ","pages":"Article 118167"},"PeriodicalIF":5.9,"publicationDate":"2025-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145089647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Discovery of fluorescent theranostic molecular glues for real-time visualization and target degradation toward eEF2K 用于实时可视化和eEF2K靶标降解的荧光治疗分子胶的发现
IF 5.9 2区 医学
European Journal of Medicinal Chemistry Pub Date : 2025-09-18 DOI: 10.1016/j.ejmech.2025.118180
Tingting Liu , Jie Ma , Gaopan Dong , Mei Zhang , Subin Song , Xuerui Zhang , Shixiang Qi , Mingyu Cheng , Wenjie Liu , Xu Wang , Yuqi Gao
{"title":"Discovery of fluorescent theranostic molecular glues for real-time visualization and target degradation toward eEF2K","authors":"Tingting Liu ,&nbsp;Jie Ma ,&nbsp;Gaopan Dong ,&nbsp;Mei Zhang ,&nbsp;Subin Song ,&nbsp;Xuerui Zhang ,&nbsp;Shixiang Qi ,&nbsp;Mingyu Cheng ,&nbsp;Wenjie Liu ,&nbsp;Xu Wang ,&nbsp;Yuqi Gao","doi":"10.1016/j.ejmech.2025.118180","DOIUrl":"10.1016/j.ejmech.2025.118180","url":null,"abstract":"<div><div>Eukaryotic elongation factor 2 kinase (eEF2K) plays a significant role in tumor cell adaptation under metabolic stress and serves as a promising target for cancer therapy. Nowadays, the research about target protein degradation (TPD) technology is still in the ascendant, which led to the PROTACs and MGs that induce eEF2K degradation. However, few approaches could realize the real-time monitoring of TPD process, hindering the understanding of protein degradation and the effect it caused. In this study, a series of novel fluorescence theranostic probes (<strong>TYMJ-01∼06</strong>) was rationally designed and synthesized, based on an MG targeting eEF2K. As the representative probe, <strong>TYMJ-01</strong> exhibited superior degradation efficiency (DC<sub>50</sub> = 82 ± 12.57 nM, Y<sub>min</sub> = 27.14 ± 12.6 %) for eEF2K through the ubiquitin–proteasome pathway, as well as outstanding capability of dynamic fluorescence imaging toward intracellular eEF2K degradation in TNBC cells. Furthermore, the probe maintained significant inhibition of cell proliferation, migration, and invasion, and enhanced the antitumor activity of paclitaxel in combination treatment. Therefore, a reliable and efficient toolkit would be provided for eEF2K mechanism study and corresponding drug discovery. Our work could also be beneficial to the study and establishment of TPD and the visualization of a dual-functional system.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"301 ","pages":"Article 118180"},"PeriodicalIF":5.9,"publicationDate":"2025-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145084223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Discovery of lipidated cysteine-based amphiphiles as bioinspired antimicrobial peptidomimetics against drug-resistant bacteria 以脂化半胱氨酸为基础的两亲体作为抗耐药细菌的仿生抗菌肽的发现
IF 5.9 2区 医学
European Journal of Medicinal Chemistry Pub Date : 2025-09-18 DOI: 10.1016/j.ejmech.2025.118182
Muhammad Subaan Fareed , Min Li , Yuhang He , Jie Su , Qingxian Ji , Yixuan Ren , Zhaopeng Wang , Ziyi Xu , Daicao Wan , Shuyu Liang , Xiaokang Miao , Yuan Li , Yani Zhou , Kairong Wang
{"title":"Discovery of lipidated cysteine-based amphiphiles as bioinspired antimicrobial peptidomimetics against drug-resistant bacteria","authors":"Muhammad Subaan Fareed ,&nbsp;Min Li ,&nbsp;Yuhang He ,&nbsp;Jie Su ,&nbsp;Qingxian Ji ,&nbsp;Yixuan Ren ,&nbsp;Zhaopeng Wang ,&nbsp;Ziyi Xu ,&nbsp;Daicao Wan ,&nbsp;Shuyu Liang ,&nbsp;Xiaokang Miao ,&nbsp;Yuan Li ,&nbsp;Yani Zhou ,&nbsp;Kairong Wang","doi":"10.1016/j.ejmech.2025.118182","DOIUrl":"10.1016/j.ejmech.2025.118182","url":null,"abstract":"<div><div>The emergence of multidrug-resistant bacteria poses a significant threat to modern medical practices and human health, creating an urgent demand for novel antibacterial agents. Inspired by host-defense peptides (HDPs), herein we employed fatty acid acylation to fine-tune the amphiphilic balance of cysteine-based amphiphilic compounds, synthesizing a series of antimicrobial peptidomimetics and evaluating their antimicrobial activity. Among them, <strong>10c</strong> stood out due to its broad-spectrum antimicrobial activity against both Gram-positive and Gram-negative bacteria, as well as its low hemolytic activity. Like HDPs, it rapidly killed bacteria primarily via a membrane-disruptive action mode, with a low propensity to induce bacterial resistance. Additionally, its ease of synthesis, serum stability, and ability to address some of the challenges HDPs face in different physiological conditions may enhance its clinical applications. Importantly, <strong>10c</strong> demonstrated significant therapeutic potential in mouse models of <em>MRSA</em>-induced pneumonia and keratitis. Overall, the present study provides new therapeutic strategies and identifies a potential lead compound for addressing antibiotic-resistant bacteria, offering novel insights for the development of next-generation antibacterial agents.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"301 ","pages":"Article 118182"},"PeriodicalIF":5.9,"publicationDate":"2025-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145084453","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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