Systems Biology in Reproductive Medicine最新文献

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Cannabis alters DNA methylation at maternally imprinted and autism candidate genes in spermatogenic cells. 大麻改变了生精细胞中母体印记和自闭症候选基因的DNA甲基化。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2022-10-01 Epub Date: 2022-06-10 DOI: 10.1080/19396368.2022.2073292
Rose Schrott, Katherine W Greeson, Dillon King, Krista M Symosko Crow, Charles A Easley, Susan K Murphy
{"title":"Cannabis alters DNA methylation at maternally imprinted and autism candidate genes in spermatogenic cells.","authors":"Rose Schrott,&nbsp;Katherine W Greeson,&nbsp;Dillon King,&nbsp;Krista M Symosko Crow,&nbsp;Charles A Easley,&nbsp;Susan K Murphy","doi":"10.1080/19396368.2022.2073292","DOIUrl":"10.1080/19396368.2022.2073292","url":null,"abstract":"<p><p>Cannabis use in the United States is increasing, with highest consumption among men at their peak reproductive years. We previously demonstrated widespread changes in sperm DNA methylation with cannabis exposure in humans and rats, including genes important in neurodevelopment. Here, we use an <i>in vitro</i> human spermatogenesis model to recapitulate chronic cannabis use and assess DNA methylation at imprinted and autism spectrum disorder (ASD) candidate genes in spermatogonial stem cell (SSC)- and spermatid-like cells. Methylation at maternally imprinted genes <i>SGCE</i> and <i>GRB10</i> was significantly altered in SSC- and spermatid-like cells, respectively, while <i>PEG3</i> was significantly differentially methylated in spermatid-like cells. Two of ten randomly selected ASD candidate genes, <i>HCN1</i> and <i>NR4A2,</i> had significantly altered methylation with cannabis exposure in SSC-like cells. These results support our findings in human cohorts and provide a new tool with which to gain mechanistic insights into the association between paternal cannabis use and risk of ASD in offspring.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10032331/pdf/nihms-1876461.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9157088","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Participation of signaling proteins in sperm hyperactivation. 信号蛋白参与精子过度激活。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2022-10-01 DOI: 10.1080/19396368.2022.2122761
Joaquín Cordero-Martínez, Guadalupe Elizabeth Jimenez-Gutierrez, Charmina Aguirre-Alvarado, Verónica Alacántara-Farfán, Germán Chamorro-Cevallos, Ana L Roa-Espitia, Enrique O Hernández-González, Lorena Rodríguez-Páez
{"title":"Participation of signaling proteins in sperm hyperactivation.","authors":"Joaquín Cordero-Martínez,&nbsp;Guadalupe Elizabeth Jimenez-Gutierrez,&nbsp;Charmina Aguirre-Alvarado,&nbsp;Verónica Alacántara-Farfán,&nbsp;Germán Chamorro-Cevallos,&nbsp;Ana L Roa-Espitia,&nbsp;Enrique O Hernández-González,&nbsp;Lorena Rodríguez-Páez","doi":"10.1080/19396368.2022.2122761","DOIUrl":"https://doi.org/10.1080/19396368.2022.2122761","url":null,"abstract":"<p><p>Sperm hyperactivation is described as a fast whip movement of the flagellum, an irregular trajectory, and an asymmetrically flagellum bend. This motility pattern is achieved during the passage of the sperm along the female genital tract. It helps the spermatozoa to cross through different viscous ambient fluids to finally reach the oocyte. Important signaling proteins are located in the sperm head and flagellum, and they all play an important role in the cascade that controls the sperm hyperactivation. The presence of HCO<sub>3</sub><sup>-</sup> modulates the activity of the soluble adenylyl cyclase (sAC), leading to the production of cAMP. In turn, cAMP modulates the sperm-specific Na<sup>+</sup>/H<sup>+</sup> exchanger (sNHE) and the t-complex protein 11 (TCP11) which play an essential role on the signaling pathway (cAMP/PKA and tyrosine phosphorylation) and sperm hypermotility. sNHE, cystic fibrosis transmembrane conductance regulator (CFTR), and voltage-gated proton channel (Hv) mainly contribute to the regulation of the intracellular pH (pHi) during capacitation. HCO<sub>3</sub><sup>-</sup> entrance and the removal of H<sup>+</sup> from the cytoplasm induces the alkalization of pHi, and this change will contribute to the activation of the cation channel of sperm (CatSper). Recently, it was described the participation on sperm motility and the regulation of calcium channels of an autophagy-related protein, the microtubule-associated protein light chain 3 (LC3). This review gathers important literature about the essential roles of sAC, sNHE, CFTR, Hv, and CatSper in the acquisition of sperm hyperactivation, and provides an integrated overview of recently described roles of TCP11 and LC3 on the sperm signaling pathway. Additionally, we provide insight into the infertility induced by the dysfunction of these critical proteins.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40659101","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Serum leptin correlates in fertile and idiopathic infertile Yemeni males: a comparative cross-sectional study. 血清瘦素与可育和特发性不孕也门男性相关:一项比较横断面研究。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2022-10-01 Epub Date: 2022-09-14 DOI: 10.1080/19396368.2022.2113930
Ebraheem A Al-Nawd, Fairouz K Alshowafi, Ahmed A Abdullateef, Mohammad M Abdulgabbar Noman, Rashad H Albadani, Majed Ahmed Al-Mansoub
{"title":"Serum leptin correlates in fertile and idiopathic infertile Yemeni males: a comparative cross-sectional study.","authors":"Ebraheem A Al-Nawd,&nbsp;Fairouz K Alshowafi,&nbsp;Ahmed A Abdullateef,&nbsp;Mohammad M Abdulgabbar Noman,&nbsp;Rashad H Albadani,&nbsp;Majed Ahmed Al-Mansoub","doi":"10.1080/19396368.2022.2113930","DOIUrl":"https://doi.org/10.1080/19396368.2022.2113930","url":null,"abstract":"<p><p>This comparative cross-sectional study aimed to evaluate the relationship between serum leptin and testosterone, FSH, LH, PRL and semen quality in fertile and idiopathic infertile Yemeni men. A total of 30 infertile males with unknown causes and 30 age-matched healthy fertile males were enrolled in this study. The body mass index (BMI) and waist circumference (WC) were measured. Semen samples were analyzed according to the WHO manual for semen analysis. Serum samples were tested for hormones. Subjects were then divided into subgroups and compared based on their main seminal findings. The WC, serum leptin, PRL, FSH and LH levels were significantly higher (<i>p</i> < 0.05) in the infertile subjects than in the fertile group. Serum leptin demonstrated a significant positive correlation (<i>p</i> < 0.01) with body weight, BMI and WC in fertile males and a significant negative correlation (<i>p</i> < 0.01) with testosterone in fertile and infertile males. Similarly, a significant positive correlation was found between serum leptin and FSH (<i>p</i> < 0.01) and LH (<i>p</i> < 0.05) levels in the infertile subjects. The findings showed that non-obstructive azoospermic (NOA) patients have significant (<i>p</i> < 0.05) high levels of serum leptin, FSH, and LH. These findings may support the possibility of a direct peripheral negative effect of leptin on testicular steroidogenesis independent of the suggested indirect effect, and it could directly impact spermatogenesis without inhibiting testosterone production. This effect was accompanied by increasing serum PRL levels. Furthermore, serum leptin and gonadotropins were found to be increased in the idiopathic NOA group. The present study provided valuable insights into the fertile and idiopathic infertile Yemeni males and could establish an important foundation for future andrological-related studies such as investigating the relationship between leptin and other hormones; and infertility-related genetic and epigenetic factors.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40357799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Acute effects of para-chloroamphetamine on testosterone and markers of apoptosis in seminiferous epithelium of prepubertal male rats. 对氯苯丙胺对青春期前雄性大鼠精精上皮中睾酮和细胞凋亡标志物的急性影响。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2022-10-01 Epub Date: 2022-09-21 DOI: 10.1080/19396368.2022.2116369
Cindy Rivas, Maribel Flores, Julio Pérez, Eloir Gallegos, Mario Cárdenas, María Elena Ayala, Andrés Aragón
{"title":"Acute effects of <i>para</i>-chloroamphetamine on testosterone and markers of apoptosis in seminiferous epithelium of prepubertal male rats.","authors":"Cindy Rivas,&nbsp;Maribel Flores,&nbsp;Julio Pérez,&nbsp;Eloir Gallegos,&nbsp;Mario Cárdenas,&nbsp;María Elena Ayala,&nbsp;Andrés Aragón","doi":"10.1080/19396368.2022.2116369","DOIUrl":"https://doi.org/10.1080/19396368.2022.2116369","url":null,"abstract":"<p><p>Serotonin is a neurotransmitter that affects the secretion of gonadotropins and testosterone. In prepubertal male rats, serotonin has a stimulating role in testosterone secretion. Here, we used prepubertal male rats to study the effects of <i>para</i>-chloroamphetamine (pCA) on circulating testosterone and gonadotropins and markers of apoptosis in germ cells from day 1 to day 5 post-treatment. The intraperitoneal administration of pCA induced a significant reduction in concentrations of hypothalamic serotonin and circulating testosterone, but gonadotropins were not affected. In the seminiferous epithelium of pCA-treated rats, increased the number of germ cells positive to markers of apoptosis, concomitantly with alterations in morphometry and the presence of multinucleated germ cells. Levels of testosterone were reduced starting from 1 day after pCA was administered. The time window between the administration of the pCA and collection of samples was sufficient to detect changes in testosterone levels, in contrast with a previous work where no changes were found. There was a possible relationship between the reduction of testosterone and an increase in the number of germ cells positive to apoptosis markers. However, the mechanism that links pCA-testosterone-germ cell positive to markers of apoptosis is unknown. Our outcomes support the view that pCA exposure during the prepubertal stage has an acute impact on testosterone levels and affects the structure and physiology of seminiferous epithelium.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40374293","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LINC00665 affects the malignant biological behavior of ovarian cancer via the miR-148b-3p/KLF5. LINC00665通过miR-148b-3p/KLF5影响卵巢癌的恶性生物学行为。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2022-10-01 Epub Date: 2022-08-25 DOI: 10.1080/19396368.2022.2101961
Shenglan Wang, Chuanchuan Liu, Yongchuan Li, Jinwan Qiao, Xinling Chen, Jin Bao, Ran Li, Yanxia Xing
{"title":"LINC00665 affects the malignant biological behavior of ovarian cancer via the miR-148b-3p/KLF5.","authors":"Shenglan Wang,&nbsp;Chuanchuan Liu,&nbsp;Yongchuan Li,&nbsp;Jinwan Qiao,&nbsp;Xinling Chen,&nbsp;Jin Bao,&nbsp;Ran Li,&nbsp;Yanxia Xing","doi":"10.1080/19396368.2022.2101961","DOIUrl":"https://doi.org/10.1080/19396368.2022.2101961","url":null,"abstract":"<p><p>This study investigated the expression and clinical significance of long intergenic noncoding RNA 00665 (LINC00665) in ovarian cancer (OC), as well as its effect on the malignant biological behavior of OC cells. The expression of LINC00665, miR-148b-3p, and Krüppel-like factor 5 (KLF5) in OC tissues and cells were determined by RT-qPCR. Western blot was used to detect the protein expression of KLF5. The expression patterns of LINC00665 in nuclear and cytoplasm fractions were undertaken using RT-qPCR. In addition, CCK-8 assay, clone formation assay, transwell, scratch test, and flow cytometry were respectively used to detect the cell activity, proliferation, invasiveness, healing of cells, and apoptosis rate of OC cells. Furthermore, the interactions between LINC00665 and miR-148b-3p and between miR-148b-3p and KLF5 were verified by the luciferase reporter assay, and the correlations among these three genes were analyzed. LINC00665 expression was upregulated both in OC cell lines and tissues. Si-LINC00665 inhibited cell proliferation, invasion, and migration and induced apoptosis to a certain extent. The subcellular fraction assay revealed LINC00665 to be located mainly in the cytoplasm. miR-148b-3p was a target of LINC00665, and KLF5 was directly targeted by miR-148b-3p. Si-LINC00665 inhibited KLF5 expression, miR-148b-3p inhibitor promoted KLF5 expression, and si-KLF5 inhibited LINC00665 expression. Interestingly, the expression of LINC00665 was reversely associated with miR-148b-3p expression but positively correlated with KLF5. Furthermore, miR-148b-3p expression was negatively correlated with KLF5. In addition, si-KLF5 inhibited the malignant biological behavior of OC cells, whereas miR-148b-3p inhibitor had the opposite effect. Most importantly, the si-LINC00665 could reverse the promotion effect of the miR-148b-3p inhibitor on the malignant biological behavior of OC cells. LINC00665 can be used as an effective prognostic indicator of OC, which has the potential to be a new therapeutic target.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33437344","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sex chromosome DSD individuals with mosaic 45,X0 and aberrant Y chromosomes in 46,XY cells: distinct gender phenotypes and germ cell tumour risks§. 46、XY细胞中嵌合45、X0和异常Y染色体的性染色体DSD个体:不同性别表型和生殖细胞肿瘤风险。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2022-08-01 DOI: 10.1080/19396368.2022.2057258
Peter H Vogt, Banu Besikoglu, Markus Bettendorf, Petra Frank-Herrmann, Jutta Zimmer, Urike Bender, Sabine Knauer-Fischer, Daniela Choukair, Peter Sinn, Helmuth-Guenther Doerr, Joachim Woelfle, Peter H Heidemann, Yun-Fai Chris Lau, Thomas Strowitzki
{"title":"Sex chromosome DSD individuals with mosaic 45,X0 and aberrant Y chromosomes in 46,XY cells: distinct gender phenotypes and germ cell tumour risks<sup>§</sup>.","authors":"Peter H Vogt,&nbsp;Banu Besikoglu,&nbsp;Markus Bettendorf,&nbsp;Petra Frank-Herrmann,&nbsp;Jutta Zimmer,&nbsp;Urike Bender,&nbsp;Sabine Knauer-Fischer,&nbsp;Daniela Choukair,&nbsp;Peter Sinn,&nbsp;Helmuth-Guenther Doerr,&nbsp;Joachim Woelfle,&nbsp;Peter H Heidemann,&nbsp;Yun-Fai Chris Lau,&nbsp;Thomas Strowitzki","doi":"10.1080/19396368.2022.2057258","DOIUrl":"https://doi.org/10.1080/19396368.2022.2057258","url":null,"abstract":"<p><p>\"<i>Differences of Sexual Development (DSD</i>),\" individuals with rearranged Y chromosome breaks in their 46,XY cells are reported with male and female gender phenotypes and differences in germ cell tumour (GCT) risk. This raised the question of whether male or female gender and GCT risk depends on the site of the break and/or rearrangement of the individual´s Y chromosome. In this paper, we report molecular mapping of the breakpoint on the aberrant Y chromosome of 22 <i>DSD</i> individuals with a 45,X/46,XY karyotype reared with a different gender. Their Y chromosome breaks are found at different sites on the long and short Y arms. Our data indicate that gender rearing is, neither dependent on the site of Y breakage, nor on the amount of 45,X0 cells in the individuals' leukocytes. Most prominent are secondary rearrangements of the Y chromosome breaks forming di-centric Y-structures (\"dic-Y\"). Duplications of the short Y arm and the proximal part of the long Y arm are the results. A putative GCT risk has been analysed with immunohistochemical experiments on some dysgenetic gonadal tissue sections. With specific antibodies for OCT3/4 expression, we marked the pluripotent germ cell fraction being potential tumour precursor cells. With specific antibodies for DDX3Y, TSPY, and UTY we analyzed their putative Gonadoblastoma Y (GBY) tumour susceptibility function in the same specimen. We conclude GBY expression is only diagnostic for GCT development in the aberrant germ cells of these <i>DSD</i> individuals when strong OCT3/4 expression has marked their pluripotency.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10284372/pdf/nihms-1900345.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9755519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Effect of vitrification on the expression of genes in porcine blastocysts derived from in vitro matured oocytes. 玻璃化对猪体外成熟卵母细胞囊胚基因表达的影响。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2022-08-01 DOI: 10.1080/19396368.2022.2072788
Teresa Wiesak, Ewelina Goryszewska-Szczurek
{"title":"Effect of vitrification on the expression of genes in porcine blastocysts derived from <i>in vitro</i> matured oocytes.","authors":"Teresa Wiesak,&nbsp;Ewelina Goryszewska-Szczurek","doi":"10.1080/19396368.2022.2072788","DOIUrl":"https://doi.org/10.1080/19396368.2022.2072788","url":null,"abstract":"<p><p>This study aimed to examine the effect of vitrification on the expression of genes that are crucial for porcine early embryo development; cathepsin B (<i>CTSB</i>), growth differentiation factor 9 (<i>GDF9</i>), caudal type homeobox 2 (<i>CDX2</i>), and <i>OCT-4</i>, which play an important role in the maintenance of embryonic cell pluripotency. Their gene expression was investigated in expanded blastocysts (day 6-7) derived from <i>in vitro</i> matured oocytes. The quantitative real-time PCR method was used to assess the amount of relative specific transcripts in 20 vitrified (treatment group) and 32 fresh non-vitrified (control group) blastocysts. Vitrification was performed using 7.5% dimethyl sulfoxide (DMSO) plus 7.5% ethylene glycol (EG), and in the final step, 15% DMSO plus 15% EG and a 0.5 M sucrose solution and cryotop as a vitrification device. The blastocysts were warmed in 1 M, 0.5 M, and 0.25 M sucrose solution and kept in a culture medium for six hours before their fixation and further qPCR analysis. A significant upregulation in the targeted genes <i>CTSB</i> (<i>p</i><.006), <i>GDF9</i> (<i>p</i><.04), and <i>CDX2</i> (<i>p</i><.003) was observed in the vitrified embryos compared to the fresh control group. Interestingly, the OCT-4 mRNA expression level was not affected by vitrification and remained comparable to that of the fresh non-vitrified embryos. In summary, the results of this pilot study showed, that vitrification induced substantial alteration in the expression of <i>CTSB</i>, <i>GDF9</i>, and <i>CDX2</i> genes but did not influence the expression of <i>OCT-4</i> gene in porcine <i>in vitro</i> derived blastocysts. Our data on the expression of developmentally important genes in vitrified porcine blastocyst may facilitate: (1) future improvements in culture conditions and/or cryopreservation protocol and (2) understanding the mechanism(s) of cryoinjuries inducing compromised post-thaw embryo development followed by the poor pregnancy outcome after blastocyst transfer.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40058192","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The transcript integrity index (TII) provides a standard measure of sperm RNA 转录物完整性指数(TII)提供了精子RNA的标准测量
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2022-06-06 DOI: 10.1080/19396368.2022.2071133
G. Swanson, M. Estill, S. Krawetz
{"title":"The transcript integrity index (TII) provides a standard measure of sperm RNA","authors":"G. Swanson, M. Estill, S. Krawetz","doi":"10.1080/19396368.2022.2071133","DOIUrl":"https://doi.org/10.1080/19396368.2022.2071133","url":null,"abstract":"Abstract Standardizing RNA quality is key to interpreting RNA-seq data as a compromised sample can mask the underlying biology. The challenge remains when evaluating RNA quality in samples with high RNA fragmentation. For example, programmed fragmentation and cytoplasmic expulsion, integral to sperm maturation, is a prime example of the complexities of interpreting RNA-seq data, given that fragmentation can be random andor targeted. To meet this challenge, we developed an algorithm that accurately measures RNA quality in samples with high fragmentation, such as spermatozoa. The integrity of 1,000 previously identified abundant sperm transcripts were independently visualized and evaluated using the Transcript Integrity Index (TII) algorithm to identify intact transcripts. Full-length transcripts from visual and the TII algorithm were evaluated for testis preference in humans using the GTEx tissues database. Samples were then filtered by the Interquartile Range (IQR), identifying those in which the greatest number of transcripts failed to pass the visual or TII thresholds. Transcript lists were overlapped, forming the set of intact transcripts used as TII standards. Each sample was re-evaluated as a function of this TII set of intact transcripts, with poor quality samples identified as those failing in the largest number of transcripts. While ontologically enriched in roles related to spermatogenesis and/or fertilization, samples did not segregate based on birth outcome. The TII algorithm proved an effective means to identify samples of similar quality from sperm, a cell type enriched in biologically fragmented RNAs. The algorithm should facilitate other studies using samples compromised by high levels of RNA fragmentation, such as Formalin-Fixed Paraffin-Embedded samples. Requisite to assessing male health, TII provides a solution to the long-sought-after standard that identifies samples of similar quality.","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49290828","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Protective effect of astragaloside IV on cadmium-induced spermatogenesis microenvironment damage in rats. 黄芪甲苷对镉致大鼠精子发生微环境损伤的保护作用。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2022-06-01 Epub Date: 2021-10-28 DOI: 10.1080/19396368.2021.1983888
Wei Ning, Xiaogang Liao, Xingyou Dong, Yangcai Wang, Xingliang Yang, Jie Xu, Shanhong Yi, Zhenxing Yang
{"title":"Protective effect of astragaloside IV on cadmium-induced spermatogenesis microenvironment damage in rats.","authors":"Wei Ning,&nbsp;Xiaogang Liao,&nbsp;Xingyou Dong,&nbsp;Yangcai Wang,&nbsp;Xingliang Yang,&nbsp;Jie Xu,&nbsp;Shanhong Yi,&nbsp;Zhenxing Yang","doi":"10.1080/19396368.2021.1983888","DOIUrl":"https://doi.org/10.1080/19396368.2021.1983888","url":null,"abstract":"<p><p>The previous study using Sertoli cells cultured <i>in vitro</i> has shown that the protective effects of astragaloside IV (AsIV) on cadmium (Cd)-induced damage to Sertoli cells and its membrane proteins. Yet, it is not known if AsIV has an equivalent effect on Cd-induced damage to the spermatogenesis microenvironment in rats. Using an <i>in vivo</i> model, Cd-induced damage to the spermatogenesis microenvironment and the protective effects of AsIV were studied. Eighteen male Sprague Dawley (SD) rats were randomly divided into three groups (n = 6/group): Cd group, Cd&AsIV group, and control group. Cd was administered to the rats in the Cd group via i.p. at 1 mg/kg body weight once daily, Cd and AsIV was administered to the rats in the Cd&AsIV group via i.p. at 1 mg/kg body weight and 10 mg/kg body weight respectively once daily, and the same volume of saline was administered to the rats in control group via i.p. once daily. The rats in the three groups were injected continuously for 5 days. Vesicular formation in the seminiferous tubules was observed in the Cd treatment group. The average optical density of claudin-11, zonal occludin-1 (ZO-1), and connexin 43 (Cx43) decreased significantly in the Cd treatment group. The ultrastructural damage of the Sertoli cells and tight junctions were also observed by electron microscopy. AsIV treatment rescued the morphologic changes of the seminiferous tubules of the testis and the ultrastructural damage of the Sertoli cells and tight junctions. The average optical density of claudin-11, ZO-1, and Cx43 also increased significantly after AsIV treatment. Cd damages the spermatogenesis microenvironment in rats, which can be rescued by AsIV treatment. These results illustrate that AsIV may also have a protective effect on Cd-induced damage to the spermatogenesis microenvironment in rats.<b>Abbreviations:</b> AsIV: astragaloside IV; Cd: cadmium; SD: Sprague Dawley; ZO-1: zonal occludin-1; Cx43: connexin 43; BTB: blood-testis barrier; MAPKs: mitogen-activated protein kinases; OSP: oligodendrocyte-specific protein; Cxs: connexins; GJIC: gap junctional intercellular communication; ROS: reactive oxygen species; MDA: malondialdehyde; TGF: tumor growth factor; PBS: phosphate buffer saline; BSA: bovine serum albumin.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39674568","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Age-related differential gene expression in granulosa cells and its effects on fertility using high-throughput transcriptomics. 颗粒细胞中年龄相关的差异基因表达及其对生育能力的影响。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2022-06-01 Epub Date: 2022-03-24 DOI: 10.1080/19396368.2022.2028320
Yi Yu, Ming-Jie Zhu, Chao-Feng Wei, Jie Yang, Jing-Yan Song, Li Dong, Shan Xiang, Liang Zhang, Yue Qiu, Fang Lian
{"title":"Age-related differential gene expression in granulosa cells and its effects on fertility using high-throughput transcriptomics.","authors":"Yi Yu,&nbsp;Ming-Jie Zhu,&nbsp;Chao-Feng Wei,&nbsp;Jie Yang,&nbsp;Jing-Yan Song,&nbsp;Li Dong,&nbsp;Shan Xiang,&nbsp;Liang Zhang,&nbsp;Yue Qiu,&nbsp;Fang Lian","doi":"10.1080/19396368.2022.2028320","DOIUrl":"https://doi.org/10.1080/19396368.2022.2028320","url":null,"abstract":"<p><p>More couples worldwide, delay their childbearing years. The increase in age causes a gradual decrease in female ovarian function and fertility, leading to an exponential decrease in women over 35 years of age having children. Although promising for some, assisted reproductive technology (ART) is not promising for older women. Decreased fertility in advanced age has become a growing concern in the field of reproduction. In this study, high-throughput transcriptome sequencing was used to identify the differentially expressed genes (DEGs) in the ovarian granulosa cells (GCs) of older women (aged 35-44) with infertility and younger women (aged 25-34). The enriched functions and signaling pathways of DEGs were analyzed using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). The function of DEGs were analyzed and predicted combined with clinical ART data. Sequencing results were verified by quantitative reverse transcription-polymerase chain reaction. Retrospective clinical data and bioinformatics analyses revealed marked reductions in the retrieved oocyte, metaphase II oocyte, 2PN fertilization, and effective embryo numbers in older women. Although the clinical pregnancy and live birth rates did not differ notably between the groups, the miscarriage rate increased significantly in older women. In total, 620 DEGs were identified, of which 246 were upregulated, and 374 were downregulated in the older group. GO, and KEGG analyses indicated that the mechanism of fertility decline in older women was probably related to chronic inflammation, cytokine receptor interaction, and oxidative stress. In conclusion, combined with basic clinical ART data and pregnancy outcomes, we tried to provide a more intuitive and in-depth understanding of age-related reduction in ovarian function and pathogenesis of infertility with regard to chronic inflammation and oxidative stress.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40324303","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
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