Systematic Entomology最新文献

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Whole-genome data shed light on speciation and within-species differentiation of the Papilio machaon complex around the Mediterranean Basin 全基因组数据揭示了地中海盆地周围凤蝶群落的物种形成和种内分化
IF 4.9 1区 农林科学
Systematic Entomology Pub Date : 2025-02-18 DOI: 10.1111/syen.12675
Louis-F. Cassar, Benoit Nabholz, Eliette L. Reboud, Emmanuelle Chevalier, Bérénice J. Lafon, Adam M. Cotton, Fabien L. Condamine
{"title":"Whole-genome data shed light on speciation and within-species differentiation of the Papilio machaon complex around the Mediterranean Basin","authors":"Louis-F. Cassar,&nbsp;Benoit Nabholz,&nbsp;Eliette L. Reboud,&nbsp;Emmanuelle Chevalier,&nbsp;Bérénice J. Lafon,&nbsp;Adam M. Cotton,&nbsp;Fabien L. Condamine","doi":"10.1111/syen.12675","DOIUrl":"https://doi.org/10.1111/syen.12675","url":null,"abstract":"<p>Within swallowtail butterflies, the type species <i>Papilio machaon</i> Linnaeus has fostered many studies leading to a complex taxonomy. With &gt;40 subspecies formally recognized in the Palaearctic and recently simplified to 14 subspecies, there is still a need to address the taxonomic delineation within this complex. A previous phylogenomic analysis including Holarctic subspecies has revealed that Palaearctic <i>P. machaon</i> formed several monophyletic groups, leading to treat <i>P. saharae</i> Oberthür as a subspecies and the Nearctic <i>P. machaon</i> as a separate species (<i>P. bairdii</i> Edwards). Here, we aim at testing the taxonomic boundaries and relationships in the Western Palaearctic using whole-genome data of taxa from the Mediterranean region, which include first draft genomes of <i>P. hospiton</i> Géné (41× coverage depth) and <i>P. saharae</i> (51× coverage depth). We refined the species boundary of <i>P. machaon</i> and confirmed the species status of <i>P. saharae</i>. We assessed subspecies limits of Mediterranean <i>P. machaon</i> and <i>P. saharae</i> through Bayesian multispecies coalescent inferences and population genomic analyses, indicating that a taxonomic simplification is needed, with the exclusion of <i>P. machaon</i> from North Africa (<i>P. saharae mauretanica</i> Verity, <b>comb. nov</b>.) and the synonymy of subspecies (<i>P. saharae neosaharae</i> Tarrier, <b>syn. nov</b>.). We revealed heterogeneous levels of heterozygosity between island and continental lineages that warrant further taxonomic actions. We also found evidence of low gene flow between Corsican <i>P. machaon</i> and <i>P. hospiton</i>, endemic to Corsica (and Sardinia). We discuss how the speciation and phylogeographic patterns are in line with past climatic and geological changes of the Mediterranean Basin.</p>","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"50 4","pages":"692-712"},"PeriodicalIF":4.9,"publicationDate":"2025-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://resjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/syen.12675","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145022360","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Systematics and biogeography of the Holarctic dragonfly genus Somatochlora (Anisoptera: Corduliidae) 全北极蜻蜓属的系统学和生物地理学研究(异翅目:灯芯绒科)
IF 4.7 1区 农林科学
Systematic Entomology Pub Date : 2025-02-14 DOI: 10.1111/syen.12672
Aaron Goodman, John Abbott, Jesse W. Breinholt, Seth Bybee, Paul B. Frandsen, Rob Guralnick, Vincent J. Kalkman, Manpreet Kohli, Lacie Newton, Jessica L. Ware
{"title":"Systematics and biogeography of the Holarctic dragonfly genus Somatochlora (Anisoptera: Corduliidae)","authors":"Aaron Goodman,&nbsp;John Abbott,&nbsp;Jesse W. Breinholt,&nbsp;Seth Bybee,&nbsp;Paul B. Frandsen,&nbsp;Rob Guralnick,&nbsp;Vincent J. Kalkman,&nbsp;Manpreet Kohli,&nbsp;Lacie Newton,&nbsp;Jessica L. Ware","doi":"10.1111/syen.12672","DOIUrl":"https://doi.org/10.1111/syen.12672","url":null,"abstract":"<p>The striped emeralds (<i>Somatochlora</i> Selys) are a Holarctic group of medium-sized metallic green dragonflies that mainly inhabit bogs and seepages, alpine streams, lakes, channels and lowland brooks. With 42 species they are the most diverse genus within Corduliidae (Odonata: Anisoptera). Systematic, taxonomic and biogeographic resolution within <i>Somatochlora</i> remains unclear, with numerous hypotheses of relatedness based on wing veins, male claspers (epiproct and paraprocts) and nymphs. Furthermore, <i>Somatochlora borisi</i> was recently described as a new genus (<i>Corduliochlora</i>) based on 17 morphological characters, but its position with respect to <i>Somatochlora</i> is unclear. We present a phylogenetic reconstruction of <i>Somatochlora</i> using Anchored Hybrid Enrichment (AHE) sequences of 40/42 <i>Somatochlora</i> species (including <i>Corduliochlora borisi</i>). Our data recover the monophyly of <i>Somatochlora</i>, with <i>C. borisi</i> recovered as sister to the remaining <i>Somatochlora</i>. We also recover three highly supported clades and one of mixed support; this lack of resolution is most likely due to incomplete lineage sorting, third-codon position saturation based on iterative analyses run on variations of our dataset and hybridization. Furthermore, we constructed a dataset for all species based on 20 morphological characters from the literature which were used to evaluate phylogenetic groups recovered with molecular data; the data support the validity of <i>Corduliochlora</i> as a genus distinct from <i>Somatochlora</i>. Finally, divergence time estimation and biogeographic analysis indicate <i>Somatochlora</i> originated in the Western North Hemisphere during the Miocene, with three dispersal events to the Eastern North Hemisphere (11, 7 and 5 Ma, respectively) across the Beringian Land Bridge.</p>","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"50 3","pages":"585-610"},"PeriodicalIF":4.7,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144197055","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unravelling the evolution of mycetophagy and phytophagy in fungus weevils (Curculionoidea: Anthribidae): Phylogenomic insights into Anthribinae paraphyly and tribal non-monophyly 揭示真菌象鼻虫嗜菌性和嗜植性的进化:对类象鼻虫和部落非单系象鼻虫的系统基因组研究
IF 4.9 1区 农林科学
Systematic Entomology Pub Date : 2025-02-14 DOI: 10.1111/syen.12674
Duane D. McKenna, Rolf G. Oberprieler, Adriana E. Marvaldi, Samuel D. J. Brown, Michael A. Charles, Bruno A. S. de Medeiros, Brian D. Farrell, Richard A. B. Leschen, José Ricardo M. Mermudes, K. Samanta Orellana, Seunggwan Shin, Riaan Stals, Xuankun Li
{"title":"Unravelling the evolution of mycetophagy and phytophagy in fungus weevils (Curculionoidea: Anthribidae): Phylogenomic insights into Anthribinae paraphyly and tribal non-monophyly","authors":"Duane D. McKenna,&nbsp;Rolf G. Oberprieler,&nbsp;Adriana E. Marvaldi,&nbsp;Samuel D. J. Brown,&nbsp;Michael A. Charles,&nbsp;Bruno A. S. de Medeiros,&nbsp;Brian D. Farrell,&nbsp;Richard A. B. Leschen,&nbsp;José Ricardo M. Mermudes,&nbsp;K. Samanta Orellana,&nbsp;Seunggwan Shin,&nbsp;Riaan Stals,&nbsp;Xuankun Li","doi":"10.1111/syen.12674","DOIUrl":"https://doi.org/10.1111/syen.12674","url":null,"abstract":"<p>Fungus weevils (family Anthribidae) are morphologically and ecologically diverse, with highly varied feeding habits, mainly mycetophagy but also phytophagy, palynophagy and entomophagy. The phylogeny of the family is virtually unexplored, its evolutionary history obscure; thus, the existing classification is controversial and likely artificial. We generated the first multi-gene higher-level phylogeny estimate of Anthribidae using DNA data from 400 nuclear genes obtained via anchored hybrid enrichment from 40 species representing 17 tribes plus genera <i>incertae sedis</i>. As in previous studies, the family Anthribidae was consistently recovered as the sister group of Nemonychidae. We recovered two main clades in Anthribidae as sister groups with strong statistical support, viz. a monophyletic subfamily Urodontinae and the traditionally recognized Anthribinae, which was rendered paraphyletic by the subfamily Choraginae. Paraphyly and polyphyly among tribes of Anthribinae indicate that current tribal concepts—all based on morphology and without phylogenetic analysis—are artificial. Based on our results, we subsume the subfamily Choraginae into Anthribinae and place its six current tribes (Apolectini, Araecerini, Choragini, Cisanthribini, Valenfriesiini and Xenorchestini) in an expanded subfamily Anthribinae. We also transfer three genera currently treated as Anthribinae <i>incertae sedis</i> to three generally recognized tribes, namely <i>Pleosporius</i> Holloway to Sintorini, <i>Xylanthribus</i> Kuschel to Proscoporhinini and <i>Anthribidus</i> Fåhraeus to Platystomini. The phylogenetic positions of Urodontinae and Trigonorhinini suggest that phytophagy is the ancestral feeding mode of Anthribidae, with a few taxa of Anthribinae having secondarily evolved plant-feeding from mycetophagy, the predominant feeding habit of the subfamily. Overall, our results provide the first molecular phylogenetic context for research on Anthribidae and a first step towards reconstructing a natural tribal classification of the Anthribinae. Our study highlights the need for a phylogenetic approach, sampling of type genera and deeper taxon sampling to identify natural tribal-level groupings.</p>","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"50 4","pages":"679-691"},"PeriodicalIF":4.9,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145022045","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An insect †Archaeopteryx: Cretaceous amber fossil elucidates the evolution of complex host detection and ovipositor mechanisms in parasitoid woodwasps (Hymenoptera: Orussoidea) 一种昆虫†始祖鸟:白垩纪琥珀化石揭示了寄生蜂复杂寄主探测和产卵机制的进化(膜翅目:蜂总科)
IF 4.7 1区 农林科学
Systematic Entomology Pub Date : 2025-01-29 DOI: 10.1111/syen.12673
Lars Vilhelmsen, Brendon E. Boudinot, Jörg U. Hammel, Hiroshi Nakamine, Shûhei Yamamoto
{"title":"An insect †Archaeopteryx: Cretaceous amber fossil elucidates the evolution of complex host detection and ovipositor mechanisms in parasitoid woodwasps (Hymenoptera: Orussoidea)","authors":"Lars Vilhelmsen,&nbsp;Brendon E. Boudinot,&nbsp;Jörg U. Hammel,&nbsp;Hiroshi Nakamine,&nbsp;Shûhei Yamamoto","doi":"10.1111/syen.12673","DOIUrl":"https://doi.org/10.1111/syen.12673","url":null,"abstract":"<p>We describe †<i>Cretovelona orussopteryx</i> n. gen. &amp; sp., a female orussoid from mid-Cretaceous Kachin amber. We examine the fossil with synchrotron scanning and integrate it into an existing morphological data set for Orussoidea. †<i>Cretovelona</i> is placed as sister to crown group Orussoidea by Bayesian phylogenetic analyses. It is unique in displaying a combination of plesiomorphic (e.g. 12 antennomeres, exposed ovipositor sheaths, partly internalized ovipositor that does not extend further than anterior part of abdomen) and apomorphic characters (e.g. antenna with club, fore tarsus 3-segmented) that display intermediate stages in the evolution of the host detection mechanism and the fully internalized ovipositor in extant Orussidae. The wing venation of †<i>Cretovelona</i> is even more reduced than observed in extant Orussidae, likely correlated with the small body size (&lt;2 mm). Tracing the changes in body size across the orussoid tree indicates that the stem group underwent a size reduction event in the Cretaceous, something that might have influenced character evolution in for example wing venation and internalization of the ovipositor. †<i>Cretovelona</i> is a rare example of a transitional fossil that elucidates the evolution of complex features when adapting to a highly specialized lifestyle, in this case detecting and targeting hosts deep inside wood. We propose to recognize only the family Orussidae within Orussoidea. Orussidae comprises the crown group Orussoidea, including all Cenozoic fossils described so far. The stem group taxa, all Mesozoic fossils, are not assigned to any specific family within Orussoidea. Zoobank Registration: urn:lsid:zoobank.org:pub:397F76A5-7467-4BCA-9963-6A380EC05200.</p>","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"50 3","pages":"630-645"},"PeriodicalIF":4.7,"publicationDate":"2025-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/syen.12673","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144197610","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Revision of subfamily Calonecrinae (Coleoptera: Cucujoidea: Nitidulidae) systematics and natural history of a mysterious group 一个神秘类群的系统学和自然史的修正
IF 4.7 1区 农林科学
Systematic Entomology Pub Date : 2025-01-23 DOI: 10.1111/syen.12671
Min Hyeuk Lee, Seunghyun Lee, Josef Jelínek, Richard A. B. Leschen, Ming Bai, Sheryl A. Yap, Seunghwan Lee
{"title":"Revision of subfamily Calonecrinae (Coleoptera: Cucujoidea: Nitidulidae) systematics and natural history of a mysterious group","authors":"Min Hyeuk Lee,&nbsp;Seunghyun Lee,&nbsp;Josef Jelínek,&nbsp;Richard A. B. Leschen,&nbsp;Ming Bai,&nbsp;Sheryl A. Yap,&nbsp;Seunghwan Lee","doi":"10.1111/syen.12671","DOIUrl":"https://doi.org/10.1111/syen.12671","url":null,"abstract":"<p>Calonecrinae represent a unique but small subfamily of Nitidulidae that is endemic to South Asia. Their habitats, the South Asian lowland forests, are under the imminent threat of degradation, posing a risk of rapid extinction for these species in their specific locales. Despite the looming threat to their existence, our understanding of this enigmatic group remains limited. We conducted an examination of museum and newly collected specimens, alongside a review of the literature, which led to the discovery of a new species, <i>Calonecrus mindanaoensis</i> <b>sp. nov</b>., from Mindanao, Philippines. Additionally, we provide detailed illustrations of various type specimens of the genus <i>Calonecrus</i> Thomson. For the first time, the immature stages of Calonecrinae were described based on <i>Calonecrus jendeki</i>, with detailed photographs including scanning electron microscopy images. Additionally, their natural history was uncovered, revealing that all life stages are uniquely adapted to complete their entire life cycle in sticky sap. We reevaluate the phylogenetic placement of the Calonecrinae based on phylogenetic analyses of mitochondrial genomes. Calonecrinae positioned within the Epuraeinae clade and are phylogenetically related to the epuraeine genus <i>Trimenus</i>. Consequently, this study proposes reclassifying Calonecrinae as Calonecrini <b>stat. nov</b>., an extremely modified tribe within the Epuraeinae. This research significantly broadens our understanding of the ecology of Calonecrini. Along with the taxonomic and phylogenetic results, we provide a solid foundation for the conservation of this group and further research into their unique habitat preferences and evolutionary behaviour.</p>","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"50 3","pages":"568-584"},"PeriodicalIF":4.7,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144197558","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A comparison of phylogenomic inference pipelines for low-coverage whole-genome sequencing in Formica ants 蚁群低覆盖全基因组测序的系统基因组推断管道比较
IF 4.7 1区 农林科学
Systematic Entomology Pub Date : 2025-01-21 DOI: 10.1111/syen.12670
Junxia Zhang, Long Lin, Yannan Mu, Alan Brelsford, Jessica Purcell
{"title":"A comparison of phylogenomic inference pipelines for low-coverage whole-genome sequencing in Formica ants","authors":"Junxia Zhang,&nbsp;Long Lin,&nbsp;Yannan Mu,&nbsp;Alan Brelsford,&nbsp;Jessica Purcell","doi":"10.1111/syen.12670","DOIUrl":"https://doi.org/10.1111/syen.12670","url":null,"abstract":"<p>A rapid proliferation in the availability of whole genome sequences (WGS), often with relatively low read depth, offers an unprecedented opportunity for phylogenomic advances using publicly available data, but there are several key challenges in applying these data. Using low-coverage WGS data for the ant species of <i>Formica</i>, we conducted detailed comparisons on two different analytical pipelines (reference-based vs. de novo genome assembly), four types of datasets (5-kbp-window, ultra-conserved element [UCE], single-copy ortholog [BUSCO] and mitogenome), and a series of analytical procedures (e.g. concatenation vs. coalescent analyses) to identify which are robust to typical WGS data. The results show that at a shallow scale of phylogenetic relationships of closely related species 5-kbp-windows from the reference-based pipeline and UCEs from the de novo assemblies are more successful than the BUSCOs in recovering informative markers for phylogenetic inference. Compared with concatenation analyses, coalescent analyses often resulted in disparate deeper relationships in the phylogeny. This study also uncovers evident mito-nuclear discordance and demonstrates genome-wide gene conflicts in phylogenetic signals, both pointing to possible incomplete lineage sorting and/or hybridization during the early, rapid radiation of <i>Formica</i> ants. Divergence dating analyses show that different types of data and analytical methods could result in inconsistent time estimates, highlighting the potential need for multiple approaches to better understand species divergence. The strengths and weaknesses of different analytical pipelines and strategies are discussed. Findings from this study provide valuable insights for large-scale phylogenomic projects using WGS data.</p>","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"50 3","pages":"611-629"},"PeriodicalIF":4.7,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144197588","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular phylogeny of the tribe Luciini (Lepidoptera: Lycaenidae): systematics and life history evolution 叶蝉族的分子系统发育(鳞翅目:叶蝉科):系统学与生活史进化
IF 4.7 1区 农林科学
Systematic Entomology Pub Date : 2025-01-21 DOI: 10.1111/syen.12667
Michael F. Braby, Naomi E. Pierce, David J. Lohman
{"title":"Molecular phylogeny of the tribe Luciini (Lepidoptera: Lycaenidae): systematics and life history evolution","authors":"Michael F. Braby,&nbsp;Naomi E. Pierce,&nbsp;David J. Lohman","doi":"10.1111/syen.12667","DOIUrl":"https://doi.org/10.1111/syen.12667","url":null,"abstract":"<p>The butterfly tribe Luciini (Theclinae), which currently includes 22 species, is restricted to Australia and mainland New Guinea and its adjacent islands. All species appear to have obligate, highly specialised associations with ants, and half of them are known or assumed to be myrmecophagous. Despite considerable progress in taxonomy and classification, no robust phylogenetic hypothesis currently exists for the tribe that could form a framework for a better understanding of the evolution of ant attendance in the group. Here, we reconstruct the phylogeny of the Luciini based on an extensive molecular dataset (up to 391 genetic loci for 101 ingroup samples representing 17 (77%) species and all four genera). Bayesian and maximum likelihood analyses found that the genus <i>Pseudodipsas</i> C. &amp; R. Felder is polyphyletic, with the species <i>Pseudodipsas cephenes</i> Hewitson distantly related to the type species <i>Pseudodipsas eone</i> (C. &amp; R. Felder). Comparative morphological evidence corroborates our molecular phylogenetic results and supports the establishment of a new monotypic genus, <i>Paradipsas</i> Braby, <b>gen. nov</b>., to accommodate the species <i>Paradipsas cephenes</i> (Hewitson) <b>comb. nov</b>. Phylogenetic relationships among genera in our well-supported trees are as follows: <i>Lucia</i> Swainson + (<i>Pseudodipsas</i> + (<i>Paralucia</i> Waterhouse &amp; R.E. Turner + (<i>Paradipsas</i> + <i>Acrodipsas</i> Sands))). The ancestor of the tribe most likely associated with Dolichoderinae ants (possibly arboreal <i>Anonychomyrma</i> Donisthorpe) in wet biomes during the Eocene (stem-group: 37.91 ± 2.66 million years ago ‘Mya’). Differentiation of three of the butterfly genera in the Oligocene-Miocene (crown-group: 27.17 ± 3.75 Mya) involved shifts to other dolichoderine species (subterranean species of <i>Anonychomyrma</i> for <i>Paralucia</i>) or genera (<i>Iridomyrmex</i> Mayr for <i>Lucia</i>, <i>Papyrius</i> Shattuck for <i>Acrodipsas</i>) coinciding with shifts to drier biomes. Associations with other ant subfamilies represent more recent, secondary shifts within Luciini genera in the Miocene–Pliocene, and include single ant shifts to Formicinae (<i>Notoncus</i> Emery for <i>Paralucia pyrodiscus</i> (Rosenstock)) and Myrmicinae (<i>Crematogaster</i> Lund for <i>Acrodipsas</i> spp.). These patterns strongly suggest obligate ant attendance has been pivotal in the diversification of Luciini. Aspects of the ecology and biology of <i>Paradipsas cephenes</i> <b>comb. nov</b>. are clarified, particularly its critical habitat and attendant ant <i>Anonychomyrma gilberti</i> (Forel).</p>","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"50 3","pages":"519-539"},"PeriodicalIF":4.7,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/syen.12667","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144197589","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogenomics reveals the timescale of diversification in Amblycera 系统基因组学揭示了甲壳目动物多样化的时间尺度
IF 4.7 1区 农林科学
Systematic Entomology Pub Date : 2025-01-17 DOI: 10.1111/syen.12668
Tomáš Najer, Jorge Doña, Aleš Buček, Andrew D. Sweet, Oldřich Sychra, Kevin P. Johnson
{"title":"Phylogenomics reveals the timescale of diversification in Amblycera","authors":"Tomáš Najer,&nbsp;Jorge Doña,&nbsp;Aleš Buček,&nbsp;Andrew D. Sweet,&nbsp;Oldřich Sychra,&nbsp;Kevin P. Johnson","doi":"10.1111/syen.12668","DOIUrl":"https://doi.org/10.1111/syen.12668","url":null,"abstract":"<p>Recently, genomic approaches have helped to resolve phylogenetic questions in many groups of parasitic organisms, including lice (Phthiraptera). However, these approaches have still not been applied to one of the most diverse groups of lice, Amblycera. To fill this gap, we applied phylogenomic methods based on genome-level exon sequence data to resolve the relationships within and among the families of Amblycera. Our phylogenomic trees support the monophyly of the families Ricinidae and Laemobothriidae. However, the families Trimenoponidae and Gyropidae are not monophyletic, indicating that they should be merged into a single family. The placement of <i>Trinoton</i> is unstable with respect to Boopiidae and Menoponidae, and we suggest recognizing Trinotonidae as a separate family. At the genus level, the genera <i>Colpocephalum</i>, <i>Hohorstiella</i>, <i>Menacanthus</i> and <i>Ricinus</i> were recovered as paraphyletic. Regarding generic complexes, the tree revealed the <i>Menacanthus</i> complex to be monophyletic, but the <i>Colpocephalum</i> complex paraphyletic, including genera not traditionally placed in this group. Dating analysis suggests that the divergence among families of Amblycera occurred shortly after the Cretaceous–Paleogene boundary 66 Mya. Cophylogenetic analyses revealed many host-switching events during the diversification of Amblycera, indicating that the evolutionary history of Amblycera does not tightly mirror that of its hosts. Ancestral host reconstructions revealed that the ancestral host of Amblycera was most likely a bird, with two host switching events to mammals. By combining phylogenomics, molecular dating and cophylogenetic analyses, we provide the first large-scale picture of amblyceran evolution, which will serve as a basis for future studies of this group.</p>","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"50 3","pages":"540-553"},"PeriodicalIF":4.7,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/syen.12668","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144197579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogeny of euophryine jumping spiders from ultra-conserved elements, with evidence on the intersexual coevolution of genitalia (Araneae: Salticidae: Euophryini) 超保守元件的嗜绿跳蛛系统发育及其生殖器官的两性共同进化证据(蜘蛛目:刺蛛科:嗜绿跳蛛)
IF 4.7 1区 农林科学
Systematic Entomology Pub Date : 2025-01-16 DOI: 10.1111/syen.12669
Zhaoyi Li, Feng Zhang, Wenqiang Zhang, Kiran Marathe, Wayne P. Maddison, Junxia Zhang
{"title":"Phylogeny of euophryine jumping spiders from ultra-conserved elements, with evidence on the intersexual coevolution of genitalia (Araneae: Salticidae: Euophryini)","authors":"Zhaoyi Li,&nbsp;Feng Zhang,&nbsp;Wenqiang Zhang,&nbsp;Kiran Marathe,&nbsp;Wayne P. Maddison,&nbsp;Junxia Zhang","doi":"10.1111/syen.12669","DOIUrl":"https://doi.org/10.1111/syen.12669","url":null,"abstract":"<p>Knowledge of phylogeny is required to understand the evolution of highly diverse groups such as the euophryine jumping spiders, a lineage showing high species and morphological diversity. In this study, we applied a phylogenomic approach using ultra-conserved elements (UCE) obtained from 145 taxa to infer the phylogeny of euophryine jumping spiders. The results provide a well-supported phylogenetic framework for Euophryini, especially for the deeper relationships, in which the monophyly of Euophryini, as well as most clades corresponding to a genus or a group of closely related genera, are strongly supported. Additionally, the evolutionary patterns of male embolus length and female copulatory duct length of 117 euophryine species were investigated through ancestral character state reconstruction and phylogenetically independent contrast analyses using the UCE phylogenetic framework. The results suggest strongly that the evolution of the lengths of male embolus and female copulatory duct in Euophryini is positively correlated. The common ancestor of Euophryini likely had relatively short embolus and copulatory duct, followed by repeated lengthening or shortening of both structures in different lineages. Possible mechanisms that may have caused this intersexual coevolution pattern in Euophryini are discussed. This study advances our understandings of the phylogeny, systematics and genitalic evolution of euophryines, providing a solid foundation for future studies on the diversification and evolution of this jumping spider group.</p>","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"50 3","pages":"554-567"},"PeriodicalIF":4.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144197421","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogenomic insights into the relationship and the evolutionary history of planthoppers (Insecta: Hemiptera: Fulgoromorpha) 基于基因组的系统发育分析为蜡蝉亚目(Fulgoromorpha)的系统发育关系及进化提供新见解 Phylogenomic insights into the relationship and the evolutionary history of planthoppers (Insecta: Hemiptera: Fulgoromorpha) 基于基因组的系统发育分析为蜡蝉亚目(Fulgoromorpha)的系统发育关系及进化提供新见解
IF 4.7 1区 农林科学
Systematic Entomology Pub Date : 2024-12-31 DOI: 10.1111/syen.12666
Junchen Deng, Adam Stroiński, Jacek Szwedo, Hamid Reza Ghanavi, Etka Yapar, Diego Castillo Franco, Monika Prus-Frankowska, Anna Michalik, Niklas Wahlberg, Piotr Łukasik
{"title":"Phylogenomic insights into the relationship and the evolutionary history of planthoppers (Insecta: Hemiptera: Fulgoromorpha)\u0000 基于基因组的系统发育分析为蜡蝉亚目(Fulgoromorpha)的系统发育关系及进化提供新见解","authors":"Junchen Deng,&nbsp;Adam Stroiński,&nbsp;Jacek Szwedo,&nbsp;Hamid Reza Ghanavi,&nbsp;Etka Yapar,&nbsp;Diego Castillo Franco,&nbsp;Monika Prus-Frankowska,&nbsp;Anna Michalik,&nbsp;Niklas Wahlberg,&nbsp;Piotr Łukasik","doi":"10.1111/syen.12666","DOIUrl":"https://doi.org/10.1111/syen.12666","url":null,"abstract":"<p>Planthoppers (Hemiptera: Fulgoromorpha) are a species-rich and globally distributed insect clade with high economic, ecological and evolutionary importance. However, the relationships among planthopper lineages and families remain unclear. Previous efforts based on inconsistent morphological traits, a few genes or limited sampling often resulted in conflicting tree topologies. Here, we used genome-level data to assemble 1164 nuclear single-copy genes and 13 mitochondrial protein-coding genes for 149 planthopper species representing 19 out of 21 extant families. Additional markers were added from published mitogenomes, expanding our sampling to 285 species. These markers were used for maximum likelihood–based tree inference and dating analyses. The newly inferred phylogenies validated well-accepted relationships and recovered novel placements for several taxa, including the family Achilixiidae and species from the tribe Lyncidini and genus <i>Madagascaritia</i> in Dictyopharidae and Fulgoridae. Based on molecular and morphological evidence, we proposed taxonomic changes including the establishment of a new family Borysthenidae stat. rev. within Delphacoidea and a new superfamily Meenoploidea superfam. nov. with redefined Kinnaridae stat. rev. and Meenoplidae stat. rev. The time analyses based on 57 nuclear markers and 30 fossils dated the origin of extant Fulgoromorpha back to Guadalupian, Permian (~263 Ma), close to the maximum constraint at 267.3 Ma, while applying an older root constraint resulted in an origin in Mississippian, Carboniferous (~332 Ma). While future sampling of unstudied fauna in unexplored regions or habitats may change the topology, the current phylogenomic analysis will serve as a solid foundation for research into planthopper ecology, evolution and significance.</p>","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"50 3","pages":"495-518"},"PeriodicalIF":4.7,"publicationDate":"2024-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/syen.12666","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144197531","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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