Scientific Data最新文献_第6页

Chromosome-level genome assembly of banaba (Lagerstroemia speciosa L.). 巴纳巴（Lagerstroemia speciosa L.）染色体级基因组组装。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-14 DOI: 10.1038/s41597-024-04109-y

Zhiting Wan, Tangchun Zheng, Ming Cai, Jia Wang, Huitang Pan, Tangren Cheng, Qixiang Zhang

引用次数: 0

The chromosome-level genome assembly and annotation of an invasive forest pest Obolodiplosis robiniae. 入侵森林害虫 Obolodiplosis robiniae 的染色体级基因组组装和注释。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-14 DOI: 10.1038/s41597-024-04037-x

Lan Huang, Li Wang, Hui-Quan Sun, Wen-Xia Huai, Ruo-Zhu Lin, Shu-Jun Wei, Yan-Xia Yao

引用次数: 0

Genome assembly at chromosome scale with telomere ends for Pearlspot, Etroplus suratensis. 珠斑（Etroplus suratensis）带端粒末端的染色体尺度基因组组装。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-13 DOI: 10.1038/s41597-024-04096-0

Vinaya Kumar Katneni, Karthic Krishnan, Sudheesh K Prabhudas, Roja Jayaraman, Nida Quraishi, Kumaraguru Vasagam, Ashok Kumar Jangam, Jesudhas Raymond Jani Angel, Nimisha Kaikkolante, Kumaravel Jayaraman, S Shekhar Mudagandur

{"title":"Genome assembly at chromosome scale with telomere ends for Pearlspot, Etroplus suratensis.","authors":"Vinaya Kumar Katneni, Karthic Krishnan, Sudheesh K Prabhudas, Roja Jayaraman, Nida Quraishi, Kumaraguru Vasagam, Ashok Kumar Jangam, Jesudhas Raymond Jani Angel, Nimisha Kaikkolante, Kumaravel Jayaraman, S Shekhar Mudagandur","doi":"10.1038/s41597-024-04096-0","DOIUrl":"10.1038/s41597-024-04096-0","url":null,"abstract":"The pearlspot, Etroplus suratensis is a climate resilient cichlid fish that exhibits unusual adaptation to salinity. The fish is able to complete full life cycle in diverse salinity habitats ranging from fresh water to marine environments. High-quality primary and phased genome assemblies were generated for pearlspot fish using PacBio HiFi and Arima HiC sequencing technologies, for the first time. The primary assembly is highly contiguous with contig N50 length of 36 Mb. The final assembly is of 1.247 Gb with N50 length of 51.57 Mb and 98% of the genome length anchored to 24 chromosomes. The genome was assessed to be 99.9% complete based on BUSCO evaluation and was predicted to contain 52.96% repeat elements. We have predicted 27,192 protein encoding genes, of which 21,580 were functionally annotated. The genome offers an invaluable resource to understand adaptation of pearlspot fish to diverse salinity habitats.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1226"},"PeriodicalIF":5.8,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11560961/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142627269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Chromosome-level genome assembly of the cave leech Sinospelaeobdella cavatuses (Hirudinea: Haemadipsidae). 洞穴水蛭（Sinospelaeobdella cavatuses）（蛭科：Haemadipsidae）染色体组水平的基因组组装。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-13 DOI: 10.1038/s41597-024-04007-3

Binbin Yao, Delong Guan, Lulu Yang, Tao Jiang, Lu Zhao, Muhammad Salabat Khan, Sheng-Quan Xu

引用次数: 0

Comprehensive experimental datasets of quasicrystals and their approximants. 准晶体及其近似值的综合实验数据集。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-13 DOI: 10.1038/s41597-024-04043-z

Erina Fujita, Chang Liu, Asuka Ishikawa, Tomoya Mato, Koichi Kitahara, Ryuji Tamura, Kaoru Kimura, Ryo Yoshida, Yukari Katsura

引用次数: 0

Whole genome sequencing of CRISPR/Cas9-engineered NF-κB reporter mice for validation and variant discovery. 对 CRISPR/Cas9 改造的 NF-κB 报告小鼠进行全基因组测序，以进行验证和变异发现。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-13 DOI: 10.1038/s41597-024-04064-8

Guruswamy Mahesh, Erik W Martin, Mohammad Aqdas, Kyu-Seon Oh, Myong-Hee Sung

{"title":"Whole genome sequencing of CRISPR/Cas9-engineered NF-κB reporter mice for validation and variant discovery.","authors":"Guruswamy Mahesh, Erik W Martin, Mohammad Aqdas, Kyu-Seon Oh, Myong-Hee Sung","doi":"10.1038/s41597-024-04064-8","DOIUrl":"10.1038/s41597-024-04064-8","url":null,"abstract":"Targeted knockout, mutations, or knock-in of genomic DNA fragments in model organisms have been used widely for functional and cell-tracking studies. The desired genetic perturbation is often accomplished by recombination-based or CRISPR/Cas9-based genome engineering. For validating the intended genetic modification, a local region surrounding the targeted locus is typically examined based on enzymatic cleavage and consequent length patterns, e.g. in a Southern analysis. Despite its wide use, this approach is open to incomplete and ambiguous readouts. With decreasing costs of high-throughput sequencing, it is becoming feasible to consider a large-scale validation of a new strain after a targeted genetic perturbation. Here we describe a dataset of whole-genome sequences and the variant analysis results from four novel reporter mouse strains. This served to validate the strains and identified all the off-target effects on the genome, thereby increasing the genetic diversity of genomic sequences over those represented in the public databases for inbred mice.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1225"},"PeriodicalIF":5.8,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11561245/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142627346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Chromosome-level genome assembly of Indo-Pacific king mackerel (Scomberomorus guttatus). 印度-太平洋马鲛鱼（Scomberomorus guttatus）染色体级基因组组装。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-13 DOI: 10.1038/s41597-024-04110-5

Yan Gao, Sailan Liu, Qilin Gutang, Chengzhang Li, Xiaoqi Lin, Bo Liang, Ping Li, Jianqing Lin, Wenhua Liu

引用次数: 0

High-resolution topography reveals morphological changes of Stromboli volcano following the July 2024 eruption. 高分辨率地形图显示了 2024 年 7 月爆发后斯特龙博利火山的形态变化。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-12 DOI: 10.1038/s41597-024-04098-y

Riccardo Civico, Tullio Ricci, Alessandro Cecili, Piergiorgio Scarlato

引用次数: 0

Intracranial aneurysm CTA images and 3D models dataset with clinical morphological and hemodynamic data. 颅内动脉瘤 CTA 图像和三维模型数据集，以及临床形态学和血液动力学数据。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-12 DOI: 10.1038/s41597-024-04056-8

Miao Song, Simin Wang, Qian Qian, Yuan Zhou, Yi Luo, Xijun Gong

{"title":"Intracranial aneurysm CTA images and 3D models dataset with clinical morphological and hemodynamic data.","authors":"Miao Song, Simin Wang, Qian Qian, Yuan Zhou, Yi Luo, Xijun Gong","doi":"10.1038/s41597-024-04056-8","DOIUrl":"10.1038/s41597-024-04056-8","url":null,"abstract":"Intracranial aneurysm is a cerebrovascular disease associated with a high rupture risk, often resulting in death or severe disability. Recent advances in AI enable the prediction of intracranial aneurysm initiation, progression, and rupture through medical image analysis. Despite growing research interest, there is a shortage of publicly available datasets for training and validating AI models. This paper presents a comprehensive dataset comprising high-resolution CTA images of 99 patients with 105 MCA aneurysms and 44 normal healthy controls, along with their respective clinical data and 3D models of aneurysms and the parent arteries derived from the CTA images. Furthermore, recognizing the significance of blood hemodynamics on aneurysm development, this dataset also included the morphological and hemodynamic parameters obtained by computational fluid dynamics (CFD) for each patient and healthy control, which can be utilized by researchers without prior CFD experience. This dataset will facilitate hypothesis-driven or data-driven research on intracranial aneurysms, and has the potential to deepen our understanding of this disease.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1213"},"PeriodicalIF":5.8,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11557944/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142627314","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

The first host plant dataset of Curculionidae Scolytinae of the world: miscellaneous tribes (Part 2). 世界上第一个蟋蟀科（Scolytinae）寄主植物数据集：杂类（第 2 部分）。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-12 DOI: 10.1038/s41597-024-04087-1

Matteo Marchioro, Laura Besana, Michele Rossini, Davide Vallotto, Enrico Ruzzier, Giacomo Ortis, Isabel Martinez-Sañudo, Massimo Faccoli

引用次数: 0