M. Scopelliti, Daniele Busacchio, M. Chamanzar, Yasin Karimi
{"title":"Ultrasonically sculpted tunable relay lenses for imaging and photo manipulation through turbid media (Conference Presentation) (Withdrawal Notice)","authors":"M. Scopelliti, Daniele Busacchio, M. Chamanzar, Yasin Karimi","doi":"10.1117/12.2510480","DOIUrl":"https://doi.org/10.1117/12.2510480","url":null,"abstract":"Publisher’s Note: This video, originally published on 4 March 2019, was withdrawn per author request.","PeriodicalId":206495,"journal":{"name":"Photons Plus Ultrasound: Imaging and Sensing 2019","volume":"48 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-07-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123465786","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
B. Treeby, J. Jaros, Filip Vaverka, J. Budisky, Marta Cudova, Kristian Kadlubiak, Petr Kleparnik, Filip Kuklis, Elliott S. Wise, P. Georgiou, E. Martin, James Robertson, F. Lucka, B. Cox
{"title":"Ten years of k-Wave: a review of the past and a roadmap for the future (Conference Presentation)","authors":"B. Treeby, J. Jaros, Filip Vaverka, J. Budisky, Marta Cudova, Kristian Kadlubiak, Petr Kleparnik, Filip Kuklis, Elliott S. Wise, P. Georgiou, E. Martin, James Robertson, F. Lucka, B. Cox","doi":"10.1117/12.2507824","DOIUrl":"https://doi.org/10.1117/12.2507824","url":null,"abstract":"k-Wave is an open-source MATLAB toolbox designed for the time-domain simulation of propagating acoustic waves in 1D, 2D, or 3D. The first release was in 2009, and focused on the simulation of photoacoustic initial value problems and the reconstruction of photoacoustic images from simulated or experimental data. In the ten years since, there have been eight major releases, extending both the functionality and the computational performance of the toolbox. There are now more than 10,000 registered users worldwide, and the toolbox has become the defacto standard for simulation studies in photoacoustic imaging. The development team responsible for k-Wave has also grown, with expertise now spanning physics, mathematics, inverse problems, numerical methods, software engineering, and high-performance computing. In this presentation, the major theoretical, algorithmic, and computational developments of k-Wave will be described, along with the underlying design inputs and decisions that led to these developments. A roadmap for the future development of k-Wave will also be presented. This includes new transducer classes, stair-case free sources, native support for multiple GPUs, adaptive grid refinement using moving mesh methods, gradient-based iterative photoacoustic image reconstruction, performance and accuracy improvements for the elastic wave models, and automatic job-submission to run k-Wave simulations remotely using HPC-as-a-service.","PeriodicalId":206495,"journal":{"name":"Photons Plus Ultrasound: Imaging and Sensing 2019","volume":"43 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126695146","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Junhui Shi, T. T. Wong, Yun He, Lei Li, Ruiying Zhang, Jeeseong Hwang, K. Maslov, Lihong V. Wang
{"title":"High-resolution high-contrast mid-infrared imaging of fresh biological samples with ultraviolet-localized photoacoustic microscopy (Conference Presentation)","authors":"Junhui Shi, T. T. Wong, Yun He, Lei Li, Ruiying Zhang, Jeeseong Hwang, K. Maslov, Lihong V. Wang","doi":"10.1117/12.2515616","DOIUrl":"https://doi.org/10.1117/12.2515616","url":null,"abstract":"Label-free mid-infrared (MIR) imaging provides rich chemical and structural information of biological tissues without staining. Conventionally, the long MIR wavelength severely limits the lateral resolution owing to optical diffraction; moreover, the strong MIR absorption of water ubiquitous in fresh biological samples results in high background and low contrast. Here, we present a novel approach, called ultraviolet-localized MIR photoacoustic microscopy (ULM-PAM), to achieve high-resolution and water-background–free MIR imaging of fresh biological samples. In our approach, a pulsed MIR laser thermally excites the sample at the focal spot, and a pulsed ultraviolet (UV) laser photoacoustically detects the resulting transient temperature rise owing to the Gruneisen relaxation effect, thereby reporting the intensity of the MIR absorption by the sample. The imaging resolution of our method is determined by the wavelength of the UV laser, which is one order of magnitude shorter than that of the mid-IR laser (2.5 μm to 12 μm). In addition, in the UV region from 200 nm to 230 nm, most important organic molecules in biological tissues, including proteins, lipids and nuclei acids, have strong absorption, while water is transparent. Therefore, our method can achieve high resolution and water-background free IR imaging of fresh biological samples. For cell cultures, our method achieved high-resolution and high-contrast infrared imaging of lipids, proteins. The capability of label-free histology of this method is also demonstrated in thick biological tissues, such as brain slices. Our approach provides convenient high-resolution and high-contrast MIR imaging, which can benefit diagnosis of fresh biological samples.","PeriodicalId":206495,"journal":{"name":"Photons Plus Ultrasound: Imaging and Sensing 2019","volume":"37 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115130371","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
J. Baik, Jin-Young Kim, Hyojin Kim, Hyosang Ahn, Kyunghee Byun, H. Choi, S. Ryu, Chulhong Kim
{"title":"Fast label-free photoacoustic-histology (Conference Presentation)","authors":"J. Baik, Jin-Young Kim, Hyojin Kim, Hyosang Ahn, Kyunghee Byun, H. Choi, S. Ryu, Chulhong Kim","doi":"10.1117/12.2507837","DOIUrl":"https://doi.org/10.1117/12.2507837","url":null,"abstract":"A Frozen section examination is the conventional intraoperative histology method widely used in cancer surgery for tumor margin assessment. However, this method is necessary to perform complicated process including sectioning and staining, which require approximately 15 minutes. Particularly with the ultraviolet (UV) laser (266 nm), photoacoustic microscopy (PAM) showed the capability to visualize cell nuclei without the time consuming procedures by utilizing superior optical contrast of DNA/RNA at this wavelength, which can be a potential alternative of the frozen section. However, previously developed UV-PAM is limited to be applied in intraoperative scenarios because it has suffered from slow imaging speed because of 2D mechanical scanning with linear stepper motors. To overcome this limitation, we developed a fast UV-PAM system based on a 2-axis waterproof microelectromechanical systems (MEMS) scanner with the specially fabricated optical components for UV light. This MEMS scanner enables to scan 3 × 3 mm2 range and acquire 400 × 400 pixels image within 20 seconds. The measured spatial and axial resolutions of the developed system are 2.2 and 39 μm, respectively. Finally, we acquired the histology-like PA image of the mouse kidney with characteristic tubular structures of kidney epithelial cells. In the mouse brain, distinct microstructures such as hippocampus and dentate gyrus were differentiated with the validation of frozen section sample.","PeriodicalId":206495,"journal":{"name":"Photons Plus Ultrasound: Imaging and Sensing 2019","volume":"25 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123561198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Antonio Miguel M. Caravaca Aguirre, Sakshi Singh, R. Piestun, E. Bossy
{"title":"Hybrid modality photoacoustic/fluorescence microscopy through a multimode\u0000fiber using speckle illumination\u0000 (Conference Presentation)","authors":"Antonio Miguel M. Caravaca Aguirre, Sakshi Singh, R. Piestun, E. Bossy","doi":"10.1117/12.2508865","DOIUrl":"https://doi.org/10.1117/12.2508865","url":null,"abstract":"We present an ultra-thin endoscope that combines a multimode optical fiber (MMF) attached to\u0000an optical hydrophone for simultaneous optical-resolution photoacoustic microscopy and fluorescence\u0000imaging. The MMF is used for light delivery and fluorescence collection and the hydrophone\u0000for acoustic detection; a digital micro-mirror device (DMD) modulates the amplitude of the optical\u0000wavefront of a pulsed laser coupled into the MMF, controlling the illumination at the distal tip.\u0000The DMD allows for fast calibration approaches to reach calibration and measurement times of a\u0000few seconds.\u0000We obtain optical-diffraction-limited images with full field illumination recording the intensity\u0000of a series of various calibrated speckle patterns produced by different configurations of the DMD\u0000at the input, with no wavefront shaping. The intensity fluctuations from speckle pattern to speckle\u0000pattern encodes for the position at which the signal is emitted. The fluorescence signal from the sample is\u0000collected with the MMF and detected with a PMT at the proximal side. For the acoustic detection,\u0000embedding the ultrasound detection within the device avoids the absorption of high-frequency ultrasound\u0000by the tissue and therefore removes any limitation on the insertion depth. The footprint of\u0000the probe is 250 um x 125 um making it thinner than common GRIN lenses used for endoscopy. \u0000To best of our knowledge, our approach provides the thinnest endoscope head capable\u0000of obtaining optical-resolution photoacoustic and fluorescence images simultaneously.","PeriodicalId":206495,"journal":{"name":"Photons Plus Ultrasound: Imaging and Sensing 2019","volume":"5 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125332564","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}