Molecular & Cellular Proteomics最新文献

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Assessing Target Specificity of the Small Molecule Inhibitor MARIMASTAT to Snake Venom Toxins: A Novel Application of Thermal Proteome Profiling. 评估小分子抑制剂马利司他对蛇毒毒素的靶向特异性:热蛋白质组图谱分析的新应用。
IF 6.1 2区 生物学
Molecular & Cellular Proteomics Pub Date : 2024-06-01 Epub Date: 2024-04-27 DOI: 10.1016/j.mcpro.2024.100779
Cara F Smith, Cassandra M Modahl, David Ceja Galindo, Keira Y Larson, Sean P Maroney, Lilyrose Bahrabadi, Nicklaus P Brandehoff, Blair W Perry, Maxwell C McCabe, Daniel Petras, Bruno Lomonte, Juan J Calvete, Todd A Castoe, Stephen P Mackessy, Kirk C Hansen, Anthony J Saviola
{"title":"Assessing Target Specificity of the Small Molecule Inhibitor MARIMASTAT to Snake Venom Toxins: A Novel Application of Thermal Proteome Profiling.","authors":"Cara F Smith, Cassandra M Modahl, David Ceja Galindo, Keira Y Larson, Sean P Maroney, Lilyrose Bahrabadi, Nicklaus P Brandehoff, Blair W Perry, Maxwell C McCabe, Daniel Petras, Bruno Lomonte, Juan J Calvete, Todd A Castoe, Stephen P Mackessy, Kirk C Hansen, Anthony J Saviola","doi":"10.1016/j.mcpro.2024.100779","DOIUrl":"10.1016/j.mcpro.2024.100779","url":null,"abstract":"<p><p>New treatments that circumvent the pitfalls of traditional antivenom therapies are critical to address the problem of snakebite globally. Numerous snake venom toxin inhibitors have shown promising cross-species neutralization of medically significant venom toxins in vivo and in vitro. The development of high-throughput approaches for the screening of such inhibitors could accelerate their identification, testing, and implementation and thus holds exciting potential for improving the treatments and outcomes of snakebite envenomation worldwide. Energetics-based proteomic approaches, including thermal proteome profiling and proteome integral solubility alteration (PISA) assays, represent \"deep proteomics\" methods for high throughput, proteome-wide identification of drug targets and ligands. In the following study, we apply thermal proteome profiling and PISA methods to characterize the interactions between venom toxin proteoforms in Crotalus atrox (Western Diamondback Rattlesnake) and the snake venom metalloprotease (SVMP) inhibitor marimastat. We investigate its venom proteome-wide effects and characterize its interactions with specific SVMP proteoforms, as well as its potential targeting of non-SVMP venom toxin families. We also compare the performance of PISA thermal window and soluble supernatant with insoluble precipitate using two inhibitor concentrations, providing the first demonstration of the utility of a sensitive high-throughput PISA-based approach to assess the direct targets of small molecule inhibitors for snake venom.</p>","PeriodicalId":18712,"journal":{"name":"Molecular & Cellular Proteomics","volume":" ","pages":"100779"},"PeriodicalIF":6.1,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11154231/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140859764","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Proteome, Lysine Acetylome, and Succinylome Identify Posttranslational Modification of STAT1 as a Novel Drug Target in Silicosis. 蛋白质组、赖氨酸乙酰基组和琥珀酰基组将 STAT1 的翻译后修饰确定为矽肺病的新型药物靶点。
IF 6.1 2区 生物学
Molecular & Cellular Proteomics Pub Date : 2024-06-01 Epub Date: 2024-04-17 DOI: 10.1016/j.mcpro.2024.100770
Tiantian Zhang, Yiyang Wang, Youliang Sun, Meiyue Song, Junling Pang, Mingyao Wang, Zhe Zhang, Peiran Yang, Yiling Chen, Xianmei Qi, Huan Zhou, Zhenzong Han, Yanjiang Xing, Ying Liu, Baicun Li, Jiangfeng Liu, Juntao Yang, Jing Wang
{"title":"Proteome, Lysine Acetylome, and Succinylome Identify Posttranslational Modification of STAT1 as a Novel Drug Target in Silicosis.","authors":"Tiantian Zhang, Yiyang Wang, Youliang Sun, Meiyue Song, Junling Pang, Mingyao Wang, Zhe Zhang, Peiran Yang, Yiling Chen, Xianmei Qi, Huan Zhou, Zhenzong Han, Yanjiang Xing, Ying Liu, Baicun Li, Jiangfeng Liu, Juntao Yang, Jing Wang","doi":"10.1016/j.mcpro.2024.100770","DOIUrl":"10.1016/j.mcpro.2024.100770","url":null,"abstract":"<p><p>Inhalation of crystalline silica dust induces incurable lung damage, silicosis, and pulmonary fibrosis. However, the mechanisms of the lung injury remain poorly understood, with limited therapeutic options aside from lung transplantation. Posttranslational modifications can regulate the function of proteins and play an important role in studying disease mechanisms. To investigate changes in posttranslational modifications of proteins in silicosis, combined quantitative proteome, acetylome, and succinylome analyses were performed with lung tissues from silica-injured and healthy mice using liquid chromatography-mass spectrometry. Combined analysis was applied to the three omics datasets to construct a protein landscape. The acetylation and succinylation of the key transcription factor STAT1 were found to play important roles in the silica-induced pathophysiological changes. Modulating the acetylation level of STAT1 with geranylgeranylacetone effectively inhibited the progression of silicosis. This report revealed a comprehensive landscape of posttranslational modifications in silica-injured mouse and presented a novel therapeutic strategy targeting the posttranslational level for silica-induced lung diseases.</p>","PeriodicalId":18712,"journal":{"name":"Molecular & Cellular Proteomics","volume":" ","pages":"100770"},"PeriodicalIF":6.1,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11107463/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140865040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring the Early Molecular Pathogenesis of Osteoarthritis Using Differential Network Analysis of Human Synovial Fluid. 利用人体滑液的差异网络分析探索骨关节炎的早期分子发病机制。
IF 6.1 2区 生物学
Molecular & Cellular Proteomics Pub Date : 2024-06-01 Epub Date: 2024-05-14 DOI: 10.1016/j.mcpro.2024.100785
Martin Rydén, Amanda Sjögren, Patrik Önnerfjord, Aleksandra Turkiewicz, Jon Tjörnstrand, Martin Englund, Neserin Ali
{"title":"Exploring the Early Molecular Pathogenesis of Osteoarthritis Using Differential Network Analysis of Human Synovial Fluid.","authors":"Martin Rydén, Amanda Sjögren, Patrik Önnerfjord, Aleksandra Turkiewicz, Jon Tjörnstrand, Martin Englund, Neserin Ali","doi":"10.1016/j.mcpro.2024.100785","DOIUrl":"10.1016/j.mcpro.2024.100785","url":null,"abstract":"<p><p>The molecular mechanisms that drive the onset and development of osteoarthritis (OA) remain largely unknown. In this exploratory study, we used a proteomic platform (SOMAscan assay) to measure the relative abundance of more than 6000 proteins in synovial fluid (SF) from knees of human donors with healthy or mildly degenerated tissues, and knees with late-stage OA from patients undergoing knee replacement surgery. Using a linear mixed effects model, we estimated the differential abundance of 6251 proteins between the three groups. We found 583 proteins upregulated in the late-stage OA, including MMP1, collagenase 3 and interleukin-6. Further, we selected 760 proteins (800 aptamers) based on absolute fold changes between the healthy and mild degeneration groups. To those, we applied Gaussian Graphical Models (GGMs) to analyze the conditional dependence of proteins and to identify key proteins and subnetworks involved in early OA pathogenesis. After regularization and stability selection, we identified 102 proteins involved in GGM networks. Notably, network complexity was lost in the protein graph for mild degeneration when compared to controls, suggesting a disruption in the regular protein interplay. Furthermore, among our main findings were several downregulated (in mild degeneration versus healthy) proteins with unique interactions in the healthy group, one of which, SLCO5A1, has not previously been associated with OA. Our results suggest that this protein is important for healthy joint function. Further, our data suggests that SF proteomics, combined with GGMs, can reveal novel insights into the molecular pathogenesis and identification of biomarker candidates for early-stage OA.</p>","PeriodicalId":18712,"journal":{"name":"Molecular & Cellular Proteomics","volume":" ","pages":"100785"},"PeriodicalIF":6.1,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11252953/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140944415","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Replisome Proximal Protein Associations and Dynamic Proteomic Changes at Stalled Replication Forks. 复制体近端蛋白关联和停滞复制叉的动态蛋白质组变化
IF 7 2区 生物学
Molecular & Cellular Proteomics Pub Date : 2024-05-01 Epub Date: 2024-04-13 DOI: 10.1016/j.mcpro.2024.100767
Carla-Marie Jurkovic, Jennifer Raisch, Stephanie Tran, Hoang Dong Nguyen, Dominique Lévesque, Michelle S Scott, Eric I Campos, François-Michel Boisvert
{"title":"Replisome Proximal Protein Associations and Dynamic Proteomic Changes at Stalled Replication Forks.","authors":"Carla-Marie Jurkovic, Jennifer Raisch, Stephanie Tran, Hoang Dong Nguyen, Dominique Lévesque, Michelle S Scott, Eric I Campos, François-Michel Boisvert","doi":"10.1016/j.mcpro.2024.100767","DOIUrl":"10.1016/j.mcpro.2024.100767","url":null,"abstract":"<p><p>DNA replication is a fundamental cellular process that ensures the transfer of genetic information during cell division. Genome duplication takes place in S phase and requires a dynamic and highly coordinated recruitment of multiple proteins at replication forks. Various genotoxic stressors lead to fork instability and collapse, hence the need for DNA repair pathways. By identifying the multitude of protein interactions implicated in those events, we can better grasp the complex and dynamic molecular mechanisms that facilitate DNA replication and repair. Proximity-dependent biotin identification was used to identify associations with 17 proteins within four core replication components, namely the CDC45/MCM2-7/GINS helicase that unwinds DNA, the DNA polymerases, replication protein A subunits, and histone chaperones needed to disassemble and reassemble chromatin. We further investigated the impact of genotoxic stress on these interactions. This analysis revealed a vast proximity association network with 108 nuclear proteins further modulated in the presence of hydroxyurea; 45 being enriched and 63 depleted. Interestingly, hydroxyurea treatment also caused a redistribution of associations with 11 interactors, meaning that the replisome is dynamically reorganized when stressed. The analysis identified several poorly characterized proteins, thereby uncovering new putative players in the cellular response to DNA replication arrest. It also provides a new comprehensive proteomic framework to understand how cells respond to obstacles during DNA replication.</p>","PeriodicalId":18712,"journal":{"name":"Molecular & Cellular Proteomics","volume":" ","pages":"100767"},"PeriodicalIF":7.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11101681/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140853407","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
TIMAHAC: Streamlined Tandem IMAC-HILIC Workflow for Simultaneous and High-Throughput Plant Phosphoproteomics and N-glycoproteomics. TIMAHAC:简化串联 IMAC-HILIC 工作流程,实现同步高通量植物磷蛋白组学和 N-糖蛋白组学。
IF 7 2区 生物学
Molecular & Cellular Proteomics Pub Date : 2024-05-01 Epub Date: 2024-04-11 DOI: 10.1016/j.mcpro.2024.100762
Chin-Wen Chen, Pei-Yi Lin, Ying-Mi Lai, Miao-Hsia Lin, Shu-Yu Lin, Chuan-Chih Hsu
{"title":"TIMAHAC: Streamlined Tandem IMAC-HILIC Workflow for Simultaneous and High-Throughput Plant Phosphoproteomics and N-glycoproteomics.","authors":"Chin-Wen Chen, Pei-Yi Lin, Ying-Mi Lai, Miao-Hsia Lin, Shu-Yu Lin, Chuan-Chih Hsu","doi":"10.1016/j.mcpro.2024.100762","DOIUrl":"10.1016/j.mcpro.2024.100762","url":null,"abstract":"<p><p>Protein post-translational modifications (PTMs) are crucial in plant cellular processes, particularly in protein folding and signal transduction. N-glycosylation and phosphorylation are notably significant PTMs, playing essential roles in regulating plant responses to environmental stimuli. However, current sequential enrichment methods for simultaneous analysis of phosphoproteome and N-glycoproteome are labor-intensive and time-consuming, limiting their throughput. Addressing this challenge, this study introduces a novel tandem S-Trap-IMAC-HILIC (S-Trap: suspension trapping; IMAC: immobilized metal ion affinity chromatography; HILIC: hydrophilic interaction chromatography) strategy, termed TIMAHAC, for simultaneous analysis of plant phosphoproteomics and N-glycoproteomics. This approach integrates IMAC and HILIC into a tandem tip format, streamlining the enrichment process of phosphopeptides and N-glycopeptides. The key innovation lies in the use of a unified buffer system and an optimized enrichment sequence to enhance efficiency and reproducibility. The applicability of TIMAHAC was demonstrated by analyzing the Arabidopsis phosphoproteome and N-glycoproteome in response to abscisic acid (ABA) treatment. Up to 1954 N-glycopeptides and 11,255 phosphopeptides were identified from Arabidopsis, indicating its scalability for plant tissues. Notably, distinct perturbation patterns were observed in the phosphoproteome and N-glycoproteome, suggesting their unique contributions to ABA response. Our results reveal that TIMAHAC offers a comprehensive approach to studying complex regulatory mechanisms and PTM interplay in plant biology, paving the way for in-depth investigations into plant signaling networks.</p>","PeriodicalId":18712,"journal":{"name":"Molecular & Cellular Proteomics","volume":" ","pages":"100762"},"PeriodicalIF":7.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11098956/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140860966","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessment of Kinome-Wide Activity Remodeling upon Picornavirus Infection. 评估皮卡病毒感染时整个基因组的活动重塑
IF 7 2区 生物学
Molecular & Cellular Proteomics Pub Date : 2024-05-01 Epub Date: 2024-03-30 DOI: 10.1016/j.mcpro.2024.100757
Tim S Veth, Lonneke V Nouwen, Marleen Zwaagstra, Heyrhyoung Lyoo, Kathryn A Wierenga, Bart Westendorp, Maarten A F M Altelaar, Celia Berkers, Frank J M van Kuppeveld, Albert J R Heck
{"title":"Assessment of Kinome-Wide Activity Remodeling upon Picornavirus Infection.","authors":"Tim S Veth, Lonneke V Nouwen, Marleen Zwaagstra, Heyrhyoung Lyoo, Kathryn A Wierenga, Bart Westendorp, Maarten A F M Altelaar, Celia Berkers, Frank J M van Kuppeveld, Albert J R Heck","doi":"10.1016/j.mcpro.2024.100757","DOIUrl":"10.1016/j.mcpro.2024.100757","url":null,"abstract":"<p><p>Picornaviridae represent a large family of single-stranded positive RNA viruses of which different members can infect both humans and animals. These include the enteroviruses (e.g., poliovirus, coxsackievirus, and rhinoviruses) as well as the cardioviruses (e.g., encephalomyocarditis virus). Picornaviruses have evolved to interact with, use, and/or evade cellular host systems to create the optimal environment for replication and spreading. It is known that viruses modify kinase activity during infection, but a proteome-wide overview of the (de)regulation of cellular kinases during picornavirus infection is lacking. To study the kinase activity landscape during picornavirus infection, we here applied dedicated targeted mass spectrometry-based assays covering ∼40% of the human kinome. Our data show that upon infection, kinases of the MAPK pathways become activated (e.g., ERK1/2, RSK1/2, JNK1/2/3, and p38), while kinases involved in regulating the cell cycle (e.g., CDK1/2, GWL, and DYRK3) become inactivated. Additionally, we observed the activation of CHK2, an important kinase involved in the DNA damage response. Using pharmacological kinase inhibitors, we demonstrate that several of these activated kinases are essential for the replication of encephalomyocarditis virus. Altogether, the data provide a quantitative understanding of the regulation of kinome activity induced by picornavirus infection, providing a resource important for developing novel antiviral therapeutic interventions.</p>","PeriodicalId":18712,"journal":{"name":"Molecular & Cellular Proteomics","volume":" ","pages":"100757"},"PeriodicalIF":7.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11067349/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140331922","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dynamic Proteomic Changes in Tumor and Immune Organs Reveal Systemic Immune Response to Tumor Development. 肿瘤和免疫器官的动态蛋白质组变化揭示了肿瘤发生的全身免疫反应。
IF 7 2区 生物学
Molecular & Cellular Proteomics Pub Date : 2024-05-01 Epub Date: 2024-03-28 DOI: 10.1016/j.mcpro.2024.100756
Zhike Li, Shuwen Liu, Zhouyong Gao, Linlin Ji, Jiaqi Jiao, Nairen Zheng, Xianju Li, Guangshun Wang, Jun Qin, Yi Wang
{"title":"Dynamic Proteomic Changes in Tumor and Immune Organs Reveal Systemic Immune Response to Tumor Development.","authors":"Zhike Li, Shuwen Liu, Zhouyong Gao, Linlin Ji, Jiaqi Jiao, Nairen Zheng, Xianju Li, Guangshun Wang, Jun Qin, Yi Wang","doi":"10.1016/j.mcpro.2024.100756","DOIUrl":"10.1016/j.mcpro.2024.100756","url":null,"abstract":"<p><p>In orthotopic mouse tumor models, tumor progression is a complex process, involving interactions among tumor cells, host cell-derived stromal cells, and immune cells. Much attention has been focused on the tumor and its tumor microenvironment, while the host's macroenvironment including immune organs in response to tumorigenesis is poorly understood. Here, we report a temporal proteomic analysis on a subcutaneous tumor and three immune organs (LN, MLN, and spleen) collected on Days 0, 3, 7, 10, 14, and 21 after inoculation of mouse forestomach cancer cells in a syngeneic mouse model. Bioinformatics analysis identified key biological processes during distinct tumor development phases, including an initial acute immune response, the attack by the host immune system, followed by the adaptive immune activation, and the build-up of extracellular matrix. Proteomic changes in LN and spleen largely recapitulated the dynamics of the immune response in the tumor, consistent with an acute defense response on D3, adaptive immune response on D10, and immune evasion by D21. In contrast, the immune response in MLN showed a gradual and sustained activation, suggesting a delayed response from a distal immune organ. Combined analyses of tumors and host immune organs allowed the identification of potential therapeutic targets. A proof-of-concept experiment demonstrated that significant growth reduction can be achieved by dual inhibition of MEK and DDR2. Together, our temporal proteomic dataset of tumors and immune organs provides a useful resource for understanding the interaction between tumors and the immune system and has the potential for identifying new therapeutic targets for cancer treatment.</p>","PeriodicalId":18712,"journal":{"name":"Molecular & Cellular Proteomics","volume":" ","pages":"100756"},"PeriodicalIF":7.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11060955/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140330018","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Proteomics Impact on Cell Biology to Resolve Cell Structure and Function. 蛋白质组学对细胞生物学的影响,以解析细胞结构和功能。
IF 7 2区 生物学
Molecular & Cellular Proteomics Pub Date : 2024-05-01 Epub Date: 2024-04-02 DOI: 10.1016/j.mcpro.2024.100758
John J M Bergeron
{"title":"Proteomics Impact on Cell Biology to Resolve Cell Structure and Function.","authors":"John J M Bergeron","doi":"10.1016/j.mcpro.2024.100758","DOIUrl":"10.1016/j.mcpro.2024.100758","url":null,"abstract":"<p><p>The acceleration of advances in proteomics has enabled integration with imaging at the EM and light microscopy levels, cryo-EM of protein structures, and artificial intelligence with proteins comprehensively and accurately resolved for cell structures at nanometer to subnanometer resolution. Proteomics continues to outpace experimentally based structural imaging, but their ultimate integration is a path toward the goal of a compendium of all proteins to understand mechanistically cell structure and function.</p>","PeriodicalId":18712,"journal":{"name":"Molecular & Cellular Proteomics","volume":"23 5","pages":"100758"},"PeriodicalIF":7.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11070594/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140868247","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Galectin-4 Antimicrobial Activity Primarily Occurs Through its C-Terminal Domain. Galectin-4 的抗菌活性主要通过其 C 端结构域产生。
IF 6.1 2区 生物学
Molecular & Cellular Proteomics Pub Date : 2024-05-01 Epub Date: 2024-03-13 DOI: 10.1016/j.mcpro.2024.100747
Hau-Ming Jan, Shang-Chuen Wu, Carter J Stowell, Mary L Vallecillo-Zúniga, Anu Paul, Kashyap R Patel, Sasikala Muthusamy, Hsien-Ya Lin, Diyoly Ayona, Ryan Philip Jajosky, Samata P Varadkar, Hirotomo Nakahara, Rita Chan, Devika Bhave, William J Lane, Melissa Y Yeung, Marie A Hollenhorst, Seth Rakoff-Nahoum, Richard D Cummings, Connie M Arthur, Sean R Stowell
{"title":"Galectin-4 Antimicrobial Activity Primarily Occurs Through its C-Terminal Domain.","authors":"Hau-Ming Jan, Shang-Chuen Wu, Carter J Stowell, Mary L Vallecillo-Zúniga, Anu Paul, Kashyap R Patel, Sasikala Muthusamy, Hsien-Ya Lin, Diyoly Ayona, Ryan Philip Jajosky, Samata P Varadkar, Hirotomo Nakahara, Rita Chan, Devika Bhave, William J Lane, Melissa Y Yeung, Marie A Hollenhorst, Seth Rakoff-Nahoum, Richard D Cummings, Connie M Arthur, Sean R Stowell","doi":"10.1016/j.mcpro.2024.100747","DOIUrl":"10.1016/j.mcpro.2024.100747","url":null,"abstract":"<p><p>Although immune tolerance evolved to reduce reactivity with self, it creates a gap in the adaptive immune response against microbes that decorate themselves in self-like antigens. This is particularly apparent with carbohydrate-based blood group antigens, wherein microbes can envelope themselves in blood group structures similar to human cells. In this study, we demonstrate that the innate immune lectin, galectin-4 (Gal-4), exhibits strain-specific binding and killing behavior towards microbes that display blood group-like antigens. Examination of binding preferences using a combination of microarrays populated with ABO(H) glycans and a variety of microbial strains, including those that express blood group-like antigens, demonstrated that Gal-4 binds mammalian and microbial antigens that have features of blood group and mammalian-like structures. Although Gal-4 was thought to exist as a monomer that achieves functional bivalency through its two linked carbohydrate recognition domains, our data demonstrate that Gal-4 forms dimers and that differences in the intrinsic ability of each domain to dimerize likely influences binding affinity. While each Gal-4 domain exhibited blood group-binding activity, the C-terminal domain (Gal-4C) exhibited dimeric properties, while the N-terminal domain (Gal-4N) failed to similarly display dimeric activity. Gal-4C not only exhibited the ability to dimerize but also possessed higher affinity toward ABO(H) blood group antigens and microbes expressing glycans with blood group-like features. Furthermore, when compared to Gal-4N, Gal-4C exhibited more potent antimicrobial activity. Even in the context of the full-length protein, where Gal-4N is functionally bivalent by virtue of Gal-4C dimerization, Gal-4C continued to display higher antimicrobial activity. These results demonstrate that Gal-4 exists as a dimer and exhibits its antimicrobial activity primarily through its C-terminal domain. In doing so, these data provide important insight into key features of Gal-4 responsible for its innate immune activity against molecular mimicry.</p>","PeriodicalId":18712,"journal":{"name":"Molecular & Cellular Proteomics","volume":" ","pages":"100747"},"PeriodicalIF":6.1,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11097083/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140137028","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Corrigendum to "Red Blood Cells Protein Profile Is Modified in Breast Cancer Patients". 乳腺癌患者的红细胞蛋白谱发生改变 "的更正。
IF 7 2区 生物学
Molecular & Cellular Proteomics Pub Date : 2024-05-01 Epub Date: 2024-05-11 DOI: 10.1016/j.mcpro.2024.100774
Thais Pereira-Veiga, Susana Bravo, Antonio Gómez-Tato, Celso Yáñez-Gómez, Carmen Abuín, Vanesa Varela, Juan Cueva, Patricia Palacios, Ana B Dávila-Ibáñez, Roberto Piñeiro, Ana Vilar, María Del Pilar Chantada-Vázquez, Rafael López-López, Clotilde Costa
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