Metabolic engineering最新文献

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Reconstruction of arginine deiminase pathway sustains a higher-energy state in mammalian cells 精氨酸脱亚胺酶途径的重建维持了哺乳动物细胞的高能量状态
IF 6.8 1区 生物学
Metabolic engineering Pub Date : 2026-04-01 Epub Date: 2026-02-10 DOI: 10.1016/j.ymben.2026.02.004
Mauro Torres , Matthew Reaney , Kate Meeson , Devika Kalsi , Leon P. Pybus , Alan J. Dickson
{"title":"Reconstruction of arginine deiminase pathway sustains a higher-energy state in mammalian cells","authors":"Mauro Torres ,&nbsp;Matthew Reaney ,&nbsp;Kate Meeson ,&nbsp;Devika Kalsi ,&nbsp;Leon P. Pybus ,&nbsp;Alan J. Dickson","doi":"10.1016/j.ymben.2026.02.004","DOIUrl":"10.1016/j.ymben.2026.02.004","url":null,"abstract":"<div><div>ATP is the universal “energy currency” of the cell, and its supply may represent one of several limiting factors influencing the productivity of mammalian cell factories. Here, we present a novel, mitochondria-independent approach to enhance cellular energy metabolism. We engineered Chinese hamster ovary (CHO) cells to express the bacterial arginine deiminase (ADI) pathway along with two arginine transporters. This system enables the direct, cytosolic conversion of arginine to ATP, effectively generating energy without relying solely on the cell's native metabolic machinery. ADI pathway expression was associated with intracellular ATP and concurrent improvements in culture performance across different CHO cell backgrounds. In contrast, cell lines engineered only for enhanced arginine uptake showed no performance gain, consistent with the hypothesis that de-novo ATP generation may contribute to improve productivity. Metabolic profiling revealed that the ADI pathway affects cellular metabolism. We observed a downshift in glycolysis, characterized by decreased glucose consumption and reduced lactate and alanine production, while amino acid and TCA cycle intermediaries remained broadly unchanged. Adenylate measurements and AMPK signalling analysis confirmed a higher energy state (ATP↑, ADP/ATP↓, p-AMPK/AMPK↓) in engineered cells. Supplementing the cell culture medium with arginine or citrulline was associated with further increases in growth and mAb titres in ADI-expressing cells. These results establish the ADI pathway as a powerful and distinct method for enhancing cellular energy. This mitochondria-independent approach highlights a new paradigm for improving the efficiency of industrial bioprocesses.</div></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"95 ","pages":"Pages 63-76"},"PeriodicalIF":6.8,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146153271","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metabolic engineering of Escherichia coli for the high-level production of putrescine 大肠杆菌代谢工程高产腐胺的研究。
IF 6.8 1区 生物学
Metabolic engineering Pub Date : 2026-04-01 Epub Date: 2026-01-16 DOI: 10.1016/j.ymben.2026.01.006
Yoo-Sung Ko , Je Woong Kim , Alisher Nazarbekov , Gi Bae Kim , Sang Yup Lee
{"title":"Metabolic engineering of Escherichia coli for the high-level production of putrescine","authors":"Yoo-Sung Ko ,&nbsp;Je Woong Kim ,&nbsp;Alisher Nazarbekov ,&nbsp;Gi Bae Kim ,&nbsp;Sang Yup Lee","doi":"10.1016/j.ymben.2026.01.006","DOIUrl":"10.1016/j.ymben.2026.01.006","url":null,"abstract":"<div><div>Putrescine is an important platform chemical used in the manufacture of engineering plastics. To support the development of a sustainable plastics industry, microbial production of putrescine from renewable resources has attracted increasing attention. In this study, we report the development of an engineered <em>Escherichia coli</em> strain capable of efficiently producing putrescine. To overcome the limitation caused by putrescine toxicity, the previously developed XQ52 strain (a W3110-derived putrescine-producing strain) was subjected to adaptive laboratory evolution, resulting in the AXQ52 strain, which produced 61.7 g/L of putrescine in fed-batch fermentation. This titer surpassed the natural tolerance threshold of <em>E. coli</em>. Genome sequencing of the AXQ52 strain revealed mutations that improved cellular fitness under high putrescine concentrations. Further production improvements were achieved by fine-tuning the expression of phosphoenolpyruvate carboxylase gene, introducing a heterologous ornithine acetyltransferase, and disrupting glutamate decarboxylase. The final engineered strain produced 72.7 g/L of putrescine with a yield of 0.25 g/g glucose and a productivity of 1.28 g/L/h, representing the highest microbial putrescine production reported to date from a simple carbon source.</div></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"95 ","pages":"Pages 28-38"},"PeriodicalIF":6.8,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145995006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Omics analyses decoding mechanisms underlying the self-flocculating phenotype of yeast cells and stress tolerance for robust production 组学分析了酵母细胞自絮凝表型和抗逆性的解码机制。
IF 6.8 1区 生物学
Metabolic engineering Pub Date : 2026-04-01 Epub Date: 2026-01-07 DOI: 10.1016/j.ymben.2026.01.003
Xue Zhang , Yang Dai , Xin-Qing Zhao , Chen-Guang Liu , Zhuo Wang , Feng-Wu Bai
{"title":"Omics analyses decoding mechanisms underlying the self-flocculating phenotype of yeast cells and stress tolerance for robust production","authors":"Xue Zhang ,&nbsp;Yang Dai ,&nbsp;Xin-Qing Zhao ,&nbsp;Chen-Guang Liu ,&nbsp;Zhuo Wang ,&nbsp;Feng-Wu Bai","doi":"10.1016/j.ymben.2026.01.003","DOIUrl":"10.1016/j.ymben.2026.01.003","url":null,"abstract":"<div><div>A unique self-flocculating yeast strain SPSC01 was developed through protoplast fusion for fuel ethanol production with high product titers. In this study, we conducted comparative multi-omics analyses on SPSC01 to elucidate mechanisms underlying its self-flocculating phenotype and associated stress tolerance, the most desirable merit for robust production in industry. Leveraging two cutting-edge third-generation sequencing technologies, we achieved a gapless high-quality and chromosome-level assembly for the genomes of SPSC01 and its parental strains. Through comprehensive genome analyses, we identified 25 unique genes that are absent in the parental strains, along with 13 novel genes with unknown functions. The self-flocculation of yeast cells is driven by the copy number of genetic variations and significantly upregulated transcription of <em>FLO</em> genes. Mutations in both <em>cis</em>- and <em>trans</em>-regulatory elements contribute to the constitutive expression of <em>FLO1</em> and its derivative genes, a prerequisite for developing the self-flocculating phenotype. Notably, we discovered a novel small protein G12 that harbors a zinc finger domain, and its overexpression substantially enhanced ethanol production of engineered yeast strains. Furthermore, alterations in metabolic pathways with ergosterol, glutathione, amino acid, and glycerophospholipid are implicated for developing tolerance to ethanol and major inhibitors acetic acid and furfural that are released during the pretreatment of lignocellulosic biomass. The progress provides strategies for engineering yeast cell factories with robustness through rational design to produce biofuels and bio-based chemicals with high product titers and productivities, in particular with the biorefinery of lignocellulosic biomass for sustainable socioeconomic development.</div></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"95 ","pages":"Pages 77-89"},"PeriodicalIF":6.8,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145937781","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineering Halomonas bluephagenesis for high-efficiency biosynthesis of pyruvate 丙酮酸高效生物合成的工程产蓝盐单胞菌
IF 6.8 1区 生物学
Metabolic engineering Pub Date : 2026-04-01 Epub Date: 2026-02-08 DOI: 10.1016/j.ymben.2026.02.003
Kang Wang , Zonghao Zhang , Zhongnan Zhang , Fuqing Wu , Guo-Qiang Chen
{"title":"Engineering Halomonas bluephagenesis for high-efficiency biosynthesis of pyruvate","authors":"Kang Wang ,&nbsp;Zonghao Zhang ,&nbsp;Zhongnan Zhang ,&nbsp;Fuqing Wu ,&nbsp;Guo-Qiang Chen","doi":"10.1016/j.ymben.2026.02.003","DOIUrl":"10.1016/j.ymben.2026.02.003","url":null,"abstract":"<div><div>Pyruvate, a C3 platform compound, has significant applications across multiple sectors, including bio-based materials (e.g., polylactic acid), pharmaceutical intermediates (such as L-alanine), and food additives. Biomanufacturing via microbial fermentation provides renewable feedstocks and cleaner processes compared to traditional petroleum-based methods. This study explores the extremophilic halophile <em>Halomonas bluephagenesis</em> TD01 as a chassis organism for pyruvate production. To enhance pyruvate synthesis, several engineering strategies were implemented, including blocking the primary carbon consumption pathway, eliminating pyruvate bypass degradation, reducing tricarboxylic acid cycle activity, removing the glycolic acid cycle, regulating transcription factors, and minimizing pyruvate reabsorption and utilization. The engineered <em>H. bluephagenesis</em> TD1.24 produced 39 g/L pyruvate in a 50-h non-sterile fed-batch fermentation. Simultaneously, the high-pyruvate-producing strains showed improved conversion rate of PHB and efficient acetoin synthesis. <em>H. bluephagenesis</em> demonstrated robustness as a chassis for next generation industrial biotechnology (NGIB), enabling the production of both its native and a broader range of biological products.</div></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"95 ","pages":"Pages 50-62"},"PeriodicalIF":6.8,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146138368","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineering xylose catabolism in the yeast Komagataella phaffii 法菲黑马酵母木糖分解代谢的工程研究
IF 6.8 1区 生物学
Metabolic engineering Pub Date : 2026-04-01 Epub Date: 2026-02-06 DOI: 10.1016/j.ymben.2026.02.001
Kun Zhang , Xin Ni , Peng Cai , Yongjin J. Zhou
{"title":"Engineering xylose catabolism in the yeast Komagataella phaffii","authors":"Kun Zhang ,&nbsp;Xin Ni ,&nbsp;Peng Cai ,&nbsp;Yongjin J. Zhou","doi":"10.1016/j.ymben.2026.02.001","DOIUrl":"10.1016/j.ymben.2026.02.001","url":null,"abstract":"<div><div>Efficient xylose utilization is crucial for biomass hydrolysate valorization. However, <em>Komagataella phaffii</em> cannot efficiently utilize xylose. Here, we constructed xylose isomerase (XI)-xylulokinase (XK) pathway, nonoxidative pentose phosphate pathway (PPP), and nonoxidative glycolysis (NOG) pathway in <em>K. phaffii</em> to increase cell growth on xylose. Additionally, the bypass pathway of xylose metabolism, the high osmolarity glycerol/mitogen-activated protein kinase (HOG-MAPK) signaling pathway, and possible negative transcription factors were blocked to further promote xylose catabolism. Moreover, adaptive laboratory evolution (ALE) dramatically improved xylose utilization, and six potential targets were identified through multiomics and reverse engineering. The engineered strain exhibited the highest reported specific growth rate μ<sub>max</sub> of up to 0.042 h<sup>−1</sup> and lag time of 25.0 h with a biomass yield of 0.366 g dry cell weight/g from sole xylose in minimal media. This strain also showed faster metabolite turnover, efficient free fatty acid (FFA) production and partial amelioration of glucose repression effect from xylose alone. The engineered metabolic plasticity described here will facilitate the regulation of xylose catabolism in other nonnative xylose-consuming yeasts.</div></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"95 ","pages":"Pages 39-49"},"PeriodicalIF":6.8,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146134407","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineering amino acid-derived malonyl-CoA pathways to boost polyketide production in Yarrowia lipolytica 工程氨基酸衍生的丙二酰辅酶a途径促进聚脂耶氏菌的聚酮生产
IF 6.8 1区 生物学
Metabolic engineering Pub Date : 2026-03-01 Epub Date: 2025-11-19 DOI: 10.1016/j.ymben.2025.11.015
Jinpeng Wang , Yuxiang Hong , Zizhao Wu , Ayelet Fishman , Peng Xu
{"title":"Engineering amino acid-derived malonyl-CoA pathways to boost polyketide production in Yarrowia lipolytica","authors":"Jinpeng Wang ,&nbsp;Yuxiang Hong ,&nbsp;Zizhao Wu ,&nbsp;Ayelet Fishman ,&nbsp;Peng Xu","doi":"10.1016/j.ymben.2025.11.015","DOIUrl":"10.1016/j.ymben.2025.11.015","url":null,"abstract":"<div><div>Malonyl-CoA is a central precursor involved in the synthesis of various bio-based chemicals, including polyketides, fatty acids, and flavonoids. However, the production of these chemicals is often limited by the availability of malonyl-CoA. Based on retrosynthesis principles, we designed two thermodynamically favorable malonyl-CoA pathways using L-glutamate and L-aspartate as substrates. The novel pathways leverage oxidative deamination and decarboxylation reactions and efficiently channel metabolic flux toward malonyl-CoA, resulting in increased production of total polyketides beyond the capacity of the native acetyl-CoA carboxylase route using glucose as substrate. We also discovered a new-to-nature polyketide (4-hydroxy-6-hydroxyethyl-2-pyrone) derived from the side activity of the TAL pathway, reaching 6.4 g/L in <em>Y. lipolytica</em>. This work highlights the utility of the novel malonyl-CoA pathways in enhancing polyketide production, and the possibility of upcycling abundant amino acids or protein waste in the animal farming or meat industry to produce high-value nonnatural polyketides.</div></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"94 ","pages":"Pages 99-109"},"PeriodicalIF":6.8,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145553880","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Disruption of acyl-acyl carrier protein (acyl-ACP) synthetase in cyanobacteria impairs lipid remodeling as revealed by acyl-ACP measurements 蓝藻中酰基酰基载体蛋白(酰基acp)合成酶的破坏损害脂质重塑,这是由酰基acp测量显示的
IF 6.8 1区 生物学
Metabolic engineering Pub Date : 2026-03-01 Epub Date: 2025-11-05 DOI: 10.1016/j.ymben.2025.11.004
Juthamas Jaroensuk , Joshua P. Abraham , Baltazar E. Zuniga , Hawkins S. Shepard , Michael Wei , Russell Williams , Stewart A. Morley , Maneesh Lingwan , Jiahong Zhou , Michael A. Jindra , Poonam Jyoti , Bo Wang , Jody C. May , John A. McLean , Jamey D. Young , Brian F. Pfleger , Doug K. Allen
{"title":"Disruption of acyl-acyl carrier protein (acyl-ACP) synthetase in cyanobacteria impairs lipid remodeling as revealed by acyl-ACP measurements","authors":"Juthamas Jaroensuk ,&nbsp;Joshua P. Abraham ,&nbsp;Baltazar E. Zuniga ,&nbsp;Hawkins S. Shepard ,&nbsp;Michael Wei ,&nbsp;Russell Williams ,&nbsp;Stewart A. Morley ,&nbsp;Maneesh Lingwan ,&nbsp;Jiahong Zhou ,&nbsp;Michael A. Jindra ,&nbsp;Poonam Jyoti ,&nbsp;Bo Wang ,&nbsp;Jody C. May ,&nbsp;John A. McLean ,&nbsp;Jamey D. Young ,&nbsp;Brian F. Pfleger ,&nbsp;Doug K. Allen","doi":"10.1016/j.ymben.2025.11.004","DOIUrl":"10.1016/j.ymben.2025.11.004","url":null,"abstract":"<div><div>Free fatty acid (FFA) production in bacteria is a key target for metabolic engineering. The knockout of the acyl-ACP synthetase (AAS) prevents reincorporation of FFA into the fatty acid biosynthetic cycle and is widely used to enhance their secretion. However, the role of AAS in membrane lipid remodeling under environmental stress, such as altered temperature, remains poorly understood. In cyanobacteria, temperature shifts are known to affect fatty acid desaturation and membrane fluidity, yet it is unclear whether AAS contributes to these adaptive responses through re-esterification of membrane-released acyl chains. We elucidated unique aspects of fatty acid metabolism in response to temperature changes in biotechnologically relevant microbes with the development of an efficient method for quantifying acyl-ACP intermediates using anion exchange chromatography (AEX). In <em>Escherichia coli,</em> which performs desaturation during fatty acid biosynthesis, we detected saturated and unsaturated acyl-ACPs that confirm biosynthetic pathway operation. In the cyanobacteria, <em>Picosynechococcus</em> sp. PCC 7002 and the Δ<em>aas</em> strain, changes between two temperatures were interpreted with support from proteomic and lipidomic analyses and indicated that the AAS is tied to membrane lipid remodeling. Further, polyunsaturated acyl-ACPs were detected in the Δ<em>aas</em> strain, which was unexpected because fatty acid synthesis does not produce polyunsaturates in cyanobacteria, suggesting the presence of alternative acyl-activating enzymes or unknown acyl-ACP desaturases. This study highlights the possible link between acyl chain recycling and lipid remodeling in cyanobacteria and demonstrates the utility of AEX-based acyl-ACP profiling in dissecting fatty acid metabolism.</div></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"94 ","pages":"Pages 45-56"},"PeriodicalIF":6.8,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145447241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineered plants for the production of the antioxidants arbutin and gallate 改造植物生产抗氧化剂熊果苷和没食子酸酯
IF 6.8 1区 生物学
Metabolic engineering Pub Date : 2026-03-01 Epub Date: 2025-11-10 DOI: 10.1016/j.ymben.2025.11.009
Sami Kazaz , Yu-Ton Chen , Senri Yamamoto , Yang Tian , Chien-Yuan Lin , Dylan Chin , İrem Pamukçu , Ibraheem Mohammed Al Shammaa , Yusuf Selman Akbas , Monikaben Nimavat , Emine Akyuz Turumtay , Edward E.K. Baidoo , Albert P. Kausch , Yuki Tobimatsu , Aymerick Eudes
{"title":"Engineered plants for the production of the antioxidants arbutin and gallate","authors":"Sami Kazaz ,&nbsp;Yu-Ton Chen ,&nbsp;Senri Yamamoto ,&nbsp;Yang Tian ,&nbsp;Chien-Yuan Lin ,&nbsp;Dylan Chin ,&nbsp;İrem Pamukçu ,&nbsp;Ibraheem Mohammed Al Shammaa ,&nbsp;Yusuf Selman Akbas ,&nbsp;Monikaben Nimavat ,&nbsp;Emine Akyuz Turumtay ,&nbsp;Edward E.K. Baidoo ,&nbsp;Albert P. Kausch ,&nbsp;Yuki Tobimatsu ,&nbsp;Aymerick Eudes","doi":"10.1016/j.ymben.2025.11.009","DOIUrl":"10.1016/j.ymben.2025.11.009","url":null,"abstract":"<div><div>The shikimate pathway is a crucial metabolic route for the biosynthesis of numerous valuable chemicals. In this study, we engineered the shikimate pathway in plants via expression of microbial enzymes to produce the two important antioxidants gallate and arbutin. The engineered pathways utilize the aromatics protocatechuate and 4-hydroxybenzoate as metabolic intermediates. Through transient expression in <em>Nicotiana benthamiana</em> leaves, we first identified biosynthetic routes for the production of gallate from either chorismate or 3-dehydroshikimate. Gallate production was then achieved in Arabidopsis using a genetic background that overproduces protocatechuate and via expression of a mutated version of the 4-hydroxybenzoate hydroxylase PobA from <em>Pseudomonas</em> sp. Arbutin production was obtained in Arabidopsis using a genetic background that overproduces 4-hydroxybenzoate and via expression of the monooxygenase MNX1 from <em>Candida parapsilosis</em>. The best Arabidopsis transgenic lines accumulated gallate and arbutin in the range of 0.25 and 0.93 dry weight % (dwt%), respectively. Using sorghum for large-scale <em>in planta</em> production, the titers of gallate and arbutin produced from the intermediate 4-hydroxybenzoate reached 0.58 dwt% and 0.50 dwt%, respectively, in mature transgenic plants, surpassing levels typically observed in plants that naturally produce these compounds. Gallate and arbutin were readily extracted from plant tissues using methanol solvent. Analysis of extractive-free biomass showed only trace amounts of gallate and its precursors 4-hydroxybenzoate and protocatechuate crosslinked to cell walls, suggesting that they mainly occur as soluble conjugated forms stored in the vacuole. This study presents alternative synthesis routes using plant hosts for the eco-friendly production of gallate and arbutin.</div></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"94 ","pages":"Pages 57-66"},"PeriodicalIF":6.8,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145492048","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Lacto-N-tetraose biosynthesis from lactose via metabolically rewired Escherichia coli 通过代谢重组的大肠杆菌从乳糖合成乳酸- n -四糖
IF 6.8 1区 生物学
Metabolic engineering Pub Date : 2026-03-01 Epub Date: 2025-12-11 DOI: 10.1016/j.ymben.2025.12.001
Dileep Sai Kumar Palur , Shannon R. Pressley , Alex McGill , Yuanyuan Bai , Hai Yu , Xi Chen , Shota Atsumi
{"title":"Lacto-N-tetraose biosynthesis from lactose via metabolically rewired Escherichia coli","authors":"Dileep Sai Kumar Palur ,&nbsp;Shannon R. Pressley ,&nbsp;Alex McGill ,&nbsp;Yuanyuan Bai ,&nbsp;Hai Yu ,&nbsp;Xi Chen ,&nbsp;Shota Atsumi","doi":"10.1016/j.ymben.2025.12.001","DOIUrl":"10.1016/j.ymben.2025.12.001","url":null,"abstract":"<div><div>Human milk oligosaccharides (HMOs), such as lacto-<em>N</em>-tetraose (LNT), play critical roles in infant health by shaping gut microbiota and modulating immune function. While LNT is already produced at industrial scales, efficient microbial routes to more complex HMOs derived from LNT remain limited. Here, we established a simplified microbial platform in <em>Escherichia coli</em> that produces LNT directly from lactose as the sole carbon and precursor source. A key innovation was construction of a strain library with tunable β-galactosidase (LacZ) activity, enabling controlled lactose hydrolysis to generate glucose and galactose for UDP-sugar biosynthesis while preserving sufficient intact lactose as the scaffold for LNT assembly. Quantitative profiling of intracellular UDP-sugars further guided identification of metabolic bottlenecks. The optimized strain achieved co-production of 2.4 g/L LNT and 2.0 g/L lacto-<em>N</em>-triose II (LNT II) from 10 g/L lactose. This streamlined strategy demonstrates the feasibility of producing LNT from a single substrate and provides a versatile foundation for scalable microbial biosynthesis of more complex HMOs.</div></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"94 ","pages":"Pages 182-191"},"PeriodicalIF":6.8,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145731784","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Systematic metabolic engineering of an industrial Penicillium citrinum for one-step pravastatin production 一步法生产普伐他汀的工业柠檬酸青霉的系统代谢工程。
IF 6.8 1区 生物学
Metabolic engineering Pub Date : 2026-03-01 Epub Date: 2025-12-16 DOI: 10.1016/j.ymben.2025.12.005
Mengyi Xiong , Zhiqiang Du , Zehao Fan , Beibei Wang , Wenjiao Diao , Min Wang , Xuenian Huang , Xuefeng Lu
{"title":"Systematic metabolic engineering of an industrial Penicillium citrinum for one-step pravastatin production","authors":"Mengyi Xiong ,&nbsp;Zhiqiang Du ,&nbsp;Zehao Fan ,&nbsp;Beibei Wang ,&nbsp;Wenjiao Diao ,&nbsp;Min Wang ,&nbsp;Xuenian Huang ,&nbsp;Xuefeng Lu","doi":"10.1016/j.ymben.2025.12.005","DOIUrl":"10.1016/j.ymben.2025.12.005","url":null,"abstract":"<div><div>Pravastatin is a widely prescribed cholesterol-lowering drug known for its superior water solubility and favorable pharmacokinetics. However, its industrial production remains constrained by an inefficient two-step fermentation process, particularly the second biotransformation step involving <em>Streptomyces fermentation</em>. In this study, we engineered the industrial mevastatin-producing strain <em>Penicillium citrinum</em> MEFC10 to achieve efficient one-step pravastatin biosynthesis. Through systematic screening and integration of optimal cytochrome P450-redox partner modules, a one-step pravastatin production cell factory was constructed in industrial <em>Penicillium citrinum</em> MEFC10. Next, NADP<sup>+</sup>-dependent <em>g6pd3</em> was overexpressed to increase statin biosynthesis via NADPH regeneration. Further manipulation of pathway transcriptional regulator, self-resistance gene and minimization of byproduct formation, a high-performance Pra2.0 strain was constructed. The Pra2.0 strain produced 8.48 g/L pravastatin and 15.06 g/L total statins in a 50-L bioreactor under fed-batch fermentation. This work established a one-step fermentation process for pravastatin production with markedly improved efficiency over the conventional methods. This work not only establishes an efficient, green production route for pravastatin but also provides a versatile engineering framework for the sustainable biosynthesis of other complex fungal polyketides.</div></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"94 ","pages":"Pages 223-230"},"PeriodicalIF":6.8,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145777265","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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