Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics最新文献

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Superpixel guided active contour segmentation of retinal layers in OCT volumes OCT卷中视网膜层的超像素引导活动轮廓分割
Fangliang Bai, S. Gibson, M. Marques, A. Podoleanu
{"title":"Superpixel guided active contour segmentation of retinal layers in OCT volumes","authors":"Fangliang Bai, S. Gibson, M. Marques, A. Podoleanu","doi":"10.1117/12.2282326","DOIUrl":"https://doi.org/10.1117/12.2282326","url":null,"abstract":"Retinal OCT image segmentation is a precursor to subsequent medical diagnosis by a clinician or machine learning algorithm. In the last decade, many algorithms have been proposed to detect retinal layer boundaries and simplify the image representation. Inspired by the recent success of superpixel methods for pre-processing natural images, we present a novel framework for segmentation of retinal layers in OCT volume data. In our framework, the region of interest (e.g. the fovea) is located using an adaptive-curve method. The cell layer boundaries are then robustly detected firstly using 1D superpixels, applied to A-scans, and then fitting active contours in B-scan images. Thereafter the 3D cell layer surfaces are efficiently segmented from the volume data. The framework was tested on healthy eye data and we show that it is capable of segmenting up to 12 layers. The experimental results imply the effectiveness of proposed method and indicate its robustness to low image resolution and intrinsic speckle noise.","PeriodicalId":184459,"journal":{"name":"Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics","volume":"19 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123651746","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Towards an ultra-thin medical endoscope: multimode fibre as a wide-field image transferring medium 迈向超薄医用内窥镜:多模光纤作为宽视场图像传输介质
M. Ďuriš, A. Bradu, A. Podoleanu, M. Hughes
{"title":"Towards an ultra-thin medical endoscope: multimode fibre as a wide-field image transferring medium","authors":"M. Ďuriš, A. Bradu, A. Podoleanu, M. Hughes","doi":"10.1117/12.2283482","DOIUrl":"https://doi.org/10.1117/12.2283482","url":null,"abstract":"Multimode optical fibres are attractive for biomedical and industrial applications such as endoscopes because of the small cross section and imaging resolution they can provide in comparison to widely-used fibre bundles. However, the image is randomly scrambled by propagation through a multimode fibre. Even though the scrambling is unpredictable, it is deterministic, and therefore the scrambling can be reversed. To unscramble the image, we treat the multimode fibre as a linear, disordered scattering medium. To calibrate, we scan a focused beam of coherent light over thousands of different beam positions at the distal end and record complex fields at the proximal end of the fibre. This way, the inputoutput response of the system is determined, which then allows computational reconstruction of reflection-mode images. However, there remains the problem of illuminating the tissue via the fibre while avoiding back reflections from the proximal face. To avoid this drawback, we provide here the first preliminary confirmation that an image can be transferred through a 2x2 fibre coupler, with the sample at its distal port interrogated in reflection. Light is injected into one port for illumination and then collected from a second port for imaging.","PeriodicalId":184459,"journal":{"name":"Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics","volume":"52 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127711831","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Long axial imaging range using conventional swept source lasers in optical coherence tomography via re-circulation loops 在光学相干层析成像中,通过再循环回路使用传统扫源激光器进行长轴向成像
A. Bradu, D. Jackson, A. Podoleanu
{"title":"Long axial imaging range using conventional swept source lasers in optical coherence tomography via re-circulation loops","authors":"A. Bradu, D. Jackson, A. Podoleanu","doi":"10.1117/12.2282116","DOIUrl":"https://doi.org/10.1117/12.2282116","url":null,"abstract":"Typically, swept source optical coherence tomography (SS-OCT) imaging instruments are capable of a longer axial range than their camera based (CB) counterpart. However, there are still various applications that would take advantage for an extended axial range. In this paper, we propose an interferometer configuration that can be used to extend the axial range of the OCT instruments equipped with conventional swept-source lasers up to a few cm. In this configuration, the two arms of the interferometer are equipped with adjustable optical path length rings. The use of semiconductor optical amplifiers in the two rings allows for compensating optical losses hence, multiple paths depth reflectivity profiles (Ascans) can be combined axially. In this way, extremely long overall axial ranges are possible. The use of the recirculation loops produces an effect equivalent to that of extending the coherence length of the swept source laser. Using this approach, the achievable axial imaging range in SS-OCT can reach values well beyond the limit imposed by the coherence length of the laser, to exceed in principle many centimeters. In the present work, we demonstrate axial ranges exceeding 4 cm using a commercial swept source laser and reaching 6 cm using an “in-house” swept source laser. When used in a conventional set-up alone, both these lasers can provide less than a few mm axial range.","PeriodicalId":184459,"journal":{"name":"Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics","volume":"2016 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132861067","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Supercontinuum ultra-high resolution line-field OCT; experimental spectrograph comparison and comparison with current clinical OCT systems by the imaging of a human cornea 超连续统超高分辨率线场OCT;对实验摄谱仪进行比较,并与现有临床OCT系统对人角膜的成像进行比较
S. Lawman, V. Romano, P. Madden, S. Mason, Bryan M. Williams, Yalin Zheng, Yaochun Shen
{"title":"Supercontinuum ultra-high resolution line-field OCT; experimental spectrograph comparison and comparison with current clinical OCT systems by the imaging of a human cornea","authors":"S. Lawman, V. Romano, P. Madden, S. Mason, Bryan M. Williams, Yalin Zheng, Yaochun Shen","doi":"10.1117/12.2286159","DOIUrl":"https://doi.org/10.1117/12.2286159","url":null,"abstract":"Ultra high axial resolution (UHR) was demonstrated early in the development of optical coherence tomography (OCT), but has not yet reached clinical practice. We present the combination of supercontinuum light source and line field (LF-) OCT as a technical and economical route to get UHR-OCT into clinic and other OCT application areas. We directly compare images of a human donor cornea taken with low and high resolution current generation clinical OCT systems with UHR-LF-OCT. These images highlight the massive information increase of UHR-OCT. Application to pharmaceutical pellets, and the functionality and imaging performance of different imaging spectrograph choices for LF- OCT are also demonstrated.","PeriodicalId":184459,"journal":{"name":"Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics","volume":"58 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130254967","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Use of a supercontinuum white light in evaluating the spectral sensitivity of the pupil light reflex 用超连续白光评价瞳孔光反射的光谱灵敏度
Catherine Chin, L. Leick, A. Podoleanu, G. Lall
{"title":"Use of a supercontinuum white light in evaluating the spectral sensitivity of the pupil light reflex","authors":"Catherine Chin, L. Leick, A. Podoleanu, G. Lall","doi":"10.1117/12.2286064","DOIUrl":"https://doi.org/10.1117/12.2286064","url":null,"abstract":"We assessed the spectral sensitivity of the pupillary light reflex in mice using a high power super continuum white light (SCWL) source in a dual wavelength configuration. This novel approach was compared to data collected from a more traditional setup using a Xenon arc lamp fitted with monochromatic interference filters. Irradiance response curves were constructed using both systems, with the added benefit of a two-wavelength, equivocal power, output using the SCWL. The variables applied to the light source were intensity, wavelength and stimulus duration through which the physiological output measured was the minimum pupil size attained under such conditions. We show that by implementing the SCWL as our novel stimulus we were able to dramatically increase the physiological usefulness of our pupillometry system.","PeriodicalId":184459,"journal":{"name":"Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics","volume":"17 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124867067","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phase estimation for global defocus correction in optical coherence tomography 光学相干层析成像中全局离焦校正的相位估计
Mikkel Jensen, N. Israelsen, A. Podoleanu, O. Bang
{"title":"Phase estimation for global defocus correction in optical coherence tomography","authors":"Mikkel Jensen, N. Israelsen, A. Podoleanu, O. Bang","doi":"10.1117/12.2292547","DOIUrl":"https://doi.org/10.1117/12.2292547","url":null,"abstract":"In this work we investigate three techniques for estimation of the non-linear phase present due to defocus in optical coherence tomography, and apply them with the angular spectrum method. The techniques are: Least squares fitting the of unwrapped phase of the angular spectrum, iterative optimization, and sub-aperture correlations. The estimated phase of a single en-face image is used to extrapolate the non-linear phase at all depths, which in the end can be used to correct the entire 3-D tomogram, and any other tomogram from the same system.","PeriodicalId":184459,"journal":{"name":"Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126897079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Stable supercontinuum source based on random lasing 基于随机激光的稳定超连续谱源
R. Ma, Y. Rao, Weili Zhang, Xiong Zeng, Han Wu
{"title":"Stable supercontinuum source based on random lasing","authors":"R. Ma, Y. Rao, Weili Zhang, Xiong Zeng, Han Wu","doi":"10.1117/12.2282548","DOIUrl":"https://doi.org/10.1117/12.2282548","url":null,"abstract":"Backward supercontinuum generation seeded by random distributed feedback fiber laser is proposed and demonstrated. Fully-distributed random lasing is firstly used as an effective pump laser to generate supercontinuum in the hybrid configuration with TrueWave fiber and dispersion compensated fiber. Supercontinuum in both propagating directions are generated through the collective nonlinear effects. It is found backward supercontinuum possesses much lower dynamical amplitude fluctuation in time domain. Random distributed lasing pumped supercontinuum generation not only enrich both the research scope of supercontinuum and random fiber laser, but also provide a practical way for development of stable broadband sources for OCT applications.","PeriodicalId":184459,"journal":{"name":"Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics","volume":"239 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115503886","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Optimisation of a polygon mirror-based spectral filter for swept source optical coherence tomography (SS-OCT) 扫描源光学相干层析成像(SS-OCT)中基于多边形镜的光谱滤波器的优化
Michael Everson, Virgil-Florin Duma, G. Dobre
{"title":"Optimisation of a polygon mirror-based spectral filter for swept source optical coherence tomography (SS-OCT)","authors":"Michael Everson, Virgil-Florin Duma, G. Dobre","doi":"10.1117/12.2283034","DOIUrl":"https://doi.org/10.1117/12.2283034","url":null,"abstract":"Medical imaging using Optical Coherence Tomography (OCT) provides clinicians with 3D, high resolution reconstructions of microscopic structures, in depth. It has been initially developed for ophthalmology, in order to scan the retinas of patients to diagnose illness. The quality of the images depends upon their axial and lateral resolutions and the properties of the light being used. Research using a polygon mirror (PM) as a spectral filter in Swept Source OCT (SS-OCT) has resulted in a variety of different experimental arrangements. Although the application of PM-based SS-OCT sources has been successfully demonstrated, the combination of their components’ fundamental properties and the overall impact they have on imaging performance is rarely reported. A more detailed examination of these properties would lead to a full description of their operation and to the best methods to employ if system performance is to be maximised. This work presents our current findings of on-going research into the optimisation of PM-based SS-OCT systems. A swept source spectral filter, consisting of a collimator, a transmission grating, a two-lens telescope and an off-axis PM with an end reflector mirror has been evaluated experimentally and compared with theoretical predictions. The system’s performance has been compared for two different fibre collimators. Although the beam width on the grating is different for each of the two collimators, the spot size at the PM facet is made the same by selecting appropriate focal lengths. An improvement in the signal roll-off at the interferometer output of ~1.0 dB/mm was obtained when using a 3.4 mm collimator compared to a 1.5 mm collimator.","PeriodicalId":184459,"journal":{"name":"Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics","volume":"16 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129780649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
New clinical opportunities for retinal vascular imaging: adaptive optics to OCT angiography 视网膜血管成像的新临床机会:自适应光学到OCT血管造影
R. Rosen, Toco Y P Chui, Rishard Weitz, A. Dubra, J. Carroll, P. Garcia, Alexander Pinhas, Nicole K. Scripsema, Shelley Mo, Steven Agemy, Brian D. Krawitz
{"title":"New clinical opportunities for retinal vascular imaging: adaptive optics to OCT angiography","authors":"R. Rosen, Toco Y P Chui, Rishard Weitz, A. Dubra, J. Carroll, P. Garcia, Alexander Pinhas, Nicole K. Scripsema, Shelley Mo, Steven Agemy, Brian D. Krawitz","doi":"10.1117/12.2304296","DOIUrl":"https://doi.org/10.1117/12.2304296","url":null,"abstract":"As techniques of retinal imaging have evolved, anatomic features that were only assessable in the laboratory have become available in the clinic for patient care. The retinal capillaries were initially described on microscope sections in the pathology laboratory. As optical methods have advanced these features have become part of the routine clinical landscape inspected daily by physicians. This paper briefly traces the evolution of these techniques and shows how they fit into the modern diagnostic armamentarium of ophthalmic retinal care.","PeriodicalId":184459,"journal":{"name":"Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics","volume":"229 3","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132702850","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Photonic compressive sensing enabled data efficient time stretch optical coherence tomography 光子压缩感知实现了数据高效的时间拉伸光学相干层析成像
Chaitanya K. Mididoddi, Chao Wang
{"title":"Photonic compressive sensing enabled data efficient time stretch optical coherence tomography","authors":"Chaitanya K. Mididoddi, Chao Wang","doi":"10.1117/12.2283035","DOIUrl":"https://doi.org/10.1117/12.2283035","url":null,"abstract":"Photonic time stretch (PTS) has enabled real time spectral domain optical coherence tomography (OCT). However, this method generates a torrent of massive data at GHz stream rate, which requires capturing as per Nyquist principle. If the OCT interferogram signal is sparse in Fourier domain, which is always true for samples with limited number of layers, it can be captured at lower (sub-Nyquist) acquisition rate as per compressive sensing method. In this work we report a data compressed PTS-OCT system based on photonic compressive sensing with 66% compression with low acquisition rate of 50MHz and measurement speed of 1.51MHz per depth profile. A new method has also been proposed to improve the system with all-optical random pattern generation, which completely avoids electronic bottleneck in traditional binary pseudorandom binary sequence (PRBS) generators.","PeriodicalId":184459,"journal":{"name":"Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics","volume":"71 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127485374","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
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