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MPNN-CWExplainer: An enhanced deep learning framework for HIV drug bioactivity prediction with class-weighted loss and explainability MPNN-CWExplainer:一个增强的深度学习框架,用于类加权损失和可解释性的HIV药物生物活性预测。
IF 5.2 2区 医学
Life sciences Pub Date : 2025-07-04 DOI: 10.1016/j.lfs.2025.123835
Aga Basit Iqbal , Assif Assad , Basharat Bhat , Muzafar A. Macha , Syed Zubair Ahmad Shah
{"title":"MPNN-CWExplainer: An enhanced deep learning framework for HIV drug bioactivity prediction with class-weighted loss and explainability","authors":"Aga Basit Iqbal ,&nbsp;Assif Assad ,&nbsp;Basharat Bhat ,&nbsp;Muzafar A. Macha ,&nbsp;Syed Zubair Ahmad Shah","doi":"10.1016/j.lfs.2025.123835","DOIUrl":"10.1016/j.lfs.2025.123835","url":null,"abstract":"<div><h3>Aims</h3><div>Human Immunodeficiency Virus (HIV) remains a critical global health concern due to its impact on the immune system and its progression to Acquired Immunodeficiency Syndrome (AIDS) if untreated. While antiretroviral therapy has advanced significantly, challenges such as drug resistance, adverse effects, and viral mutation necessitate the development of novel therapeutic strategies. This study aims to improve HIV bioactivity prediction and provide interpretable insights into molecular determinants influencing bioactivity.</div></div><div><h3>Materials and methods</h3><div>We propose MPNN-CWExplainer, a novel graph-based deep learning framework for molecular property prediction. The model integrates a Message Passing Neural Network (MPNN) with a class-weighted loss function to effectively address class imbalance in HIV datasets. Furthermore, GNNExplainer is incorporated to provide post-hoc interpretability by identifying key atom- and bond-level substructures contributing to model predictions. Model robustness is ensured through Bayesian hyperparameter optimization and multiple independent runs.</div></div><div><h3>Key findings</h3><div>MPNN-CWExplainer achieved state-of-the-art predictive performance on the HIV dataset, with an AUC-ROC of 87.631 % and AUC-PRC of 86.02 %, surpassing existing baseline models. The class-weighted approach enhanced minority class representation, and GNNExplainer successfully highlighted chemically meaningful substructures correlating with bioactivity.</div></div><div><h3>Significance</h3><div>The proposed framework not only improves prediction accuracy for HIV bioactivity but also enhances transparency and interpretability, crucial for medicinal chemists in understanding model behaviour. MPNN-CWExplainer serves as a robust and interpretable tool for computational drug discovery, supporting informed decision-making in lead optimization and molecular design.</div></div>","PeriodicalId":18122,"journal":{"name":"Life sciences","volume":"378 ","pages":"Article 123835"},"PeriodicalIF":5.2,"publicationDate":"2025-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144567621","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unravelling the roles of Vav3 in cytoskeletal control and angiogenesis 揭示Vav3在细胞骨架控制和血管生成中的作用。
IF 5.2 2区 医学
Life sciences Pub Date : 2025-07-04 DOI: 10.1016/j.lfs.2025.123834
Yan Wang , Zhaoran Wang , Wenya Diao , Tong Shi , Jiahe Xu , Tiantian Deng , Chaoying Wen , Jienan Gu , Tingting Deng , Cheng Xiao
{"title":"Unravelling the roles of Vav3 in cytoskeletal control and angiogenesis","authors":"Yan Wang ,&nbsp;Zhaoran Wang ,&nbsp;Wenya Diao ,&nbsp;Tong Shi ,&nbsp;Jiahe Xu ,&nbsp;Tiantian Deng ,&nbsp;Chaoying Wen ,&nbsp;Jienan Gu ,&nbsp;Tingting Deng ,&nbsp;Cheng Xiao","doi":"10.1016/j.lfs.2025.123834","DOIUrl":"10.1016/j.lfs.2025.123834","url":null,"abstract":"<div><div>The oncogene Vav guanine nucleotide exchange factor 3 (Vav3) can accelerate neovascularization in the context of cancer by increasing cell proliferation and metastasis, making it a useful reference for understanding the process of pannus development in rheumatoid arthritis (RA). The overactivation of synovial tissue leads to increased cell invasion and inflammatory infiltration, resulting in a tumour-like immune microenvironment. Pannus formation, an early complication of RA, can progress to bone injury. The regulatory effect of Vav3 on cell invasion mainly involves increased adhesion and metastasis to support neovascularization, with effects on inflammatory cells, osteoclasts, and the cytoskeleton, resulting in microvessel formation and even bone destruction. The influence of Vav3 on cell proliferation and differentiation manifests as the promotion of immune cell formation and activation, as well as the intensification of immune infiltration into the local tissue. Targeted inhibition of Vav3 expression can reduce the pathological damage described above and may be a potential therapeutic target to limit pannus formation. Notably, as Vav3 is a cytoskeleton-associated protein, the association between epigenetic modifications of Vav3 (such as methylation and acetylation) and metabolic reprogramming is an interesting direction for future research on autoimmune diseases. Therefore, we summarize the latest information related to the biological role of Vav3, emphasizing the regulatory effects of the cytoskeleton in pannus development in the context of tumour-related research and discussing the clinical value of Vav3 epigenetic modification and energy metabolism in angiogenesis.</div></div>","PeriodicalId":18122,"journal":{"name":"Life sciences","volume":"378 ","pages":"Article 123834"},"PeriodicalIF":5.2,"publicationDate":"2025-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144575803","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microcystin-LR exacerbates chronic kidney disease in rats: insights into gut microbiome and host proteome dysregulation 微囊藻毒素- lr加重大鼠慢性肾病:肠道微生物组和宿主蛋白质组失调的见解
IF 5.2 2区 医学
Life sciences Pub Date : 2025-07-04 DOI: 10.1016/j.lfs.2025.123840
Suppakrit Kongsintaweesuk , Keerapach Tunbenjasiri , Thatsanapong Pongking , Sitiruk Roytrakul , Sawanya Charoenlappanit , Sirirat Anutrakulchai , Chawalit Pairojkul , Kitti Intuyod , Pakornkiat Tanasuka , David Blair , Somchai Pinlaor , Porntip Pinlaor
{"title":"Microcystin-LR exacerbates chronic kidney disease in rats: insights into gut microbiome and host proteome dysregulation","authors":"Suppakrit Kongsintaweesuk ,&nbsp;Keerapach Tunbenjasiri ,&nbsp;Thatsanapong Pongking ,&nbsp;Sitiruk Roytrakul ,&nbsp;Sawanya Charoenlappanit ,&nbsp;Sirirat Anutrakulchai ,&nbsp;Chawalit Pairojkul ,&nbsp;Kitti Intuyod ,&nbsp;Pakornkiat Tanasuka ,&nbsp;David Blair ,&nbsp;Somchai Pinlaor ,&nbsp;Porntip Pinlaor","doi":"10.1016/j.lfs.2025.123840","DOIUrl":"10.1016/j.lfs.2025.123840","url":null,"abstract":"<div><h3>Aims</h3><div>This study aimed to investigate the effects of microcystin-leucine arginine (MC-LR), an environmental nephrotoxin, on the gut-kidney axis in chronic kidney disease (CKD), focusing on interactions between the gut microbiome and host proteome.</div></div><div><h3>Materials and methods</h3><div>Male Sprague-Dawley rats were administered adenine (200 mg/kg/day) for 10 days to induce kidney injury, followed by MC-LR (10 μg/mL/kg, i.p., every other day for 4 weeks). Renal function (Blood urea nitrogen, BUN; Serum creatinine, SCr and urine albumin to creatinine ratio, uACR) and kidney pathology (EGTI histology scores and picrosirius-red staining) were assessed. Expression of kidney injury (KIM-1), fibrosis (CTGF), inflammation (HMGB1 and CD3), oxidative stress (H2AX) markers were evaluated by immunohistochemical staining. Gut microbiota was analyzed by 16S rRNA sequencing, and fecal proteomics by LC-MS/MS.</div></div><div><h3>Key findings</h3><div>MC-LR markedly exacerbated adenine-induced kidney injury, leading to impair kidney function (elevated BUN, SCr, and uACR levels) and worsen kidney histopathology (higher EGTI histology scores and prominent fibrosis). Elevated expression levels of KIM1, HMBG1, CTGF, H2AX and CD3 were observed following MC-LR exposure. Notably, pro-inflammatory bacterial families (<em>Enterococcaceae</em>, <em>Enterobacteriaceae</em>) were elevated, while beneficial taxa (<em>Bifidobacteriaceae</em>, <em>Muribaculaceae</em>) decreased in the combination group. Proteomic analysis revealed upregulation of inflammatory markers (TXNIP, Itgb3bp), which correlated with <em>Enterococcaceae</em> abundance. <em>Bifidobacteriaceae</em> negatively correlated with kidney injury markers.</div></div><div><h3>Significance</h3><div>Our study reveals that MC-LR exacerbates chronic kidney disease progression by disrupting the gut-kidney axis. We highlight gut barrier integrity and inflammation as crucial therapeutic targets, offering novel insights and intervention strategies for CKD management, particularly in beyond early stages.</div></div>","PeriodicalId":18122,"journal":{"name":"Life sciences","volume":"378 ","pages":"Article 123840"},"PeriodicalIF":5.2,"publicationDate":"2025-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144575802","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Retraction notice to “Highland barley attenuates high fat and cholesterol diet induced hyperlipidemia in mice revealed by 16S rRNA gene sequencing and untargeted metabolomics” [Life Sci. 334 (2023) 122142] “青稞降低高脂高胆固醇饮食诱导小鼠高脂血症的16S rRNA基因测序和非靶向代谢组学研究”[生命科学]. 334(2023)122142]。
IF 5.2 2区 医学
Life sciences Pub Date : 2025-07-03 DOI: 10.1016/j.lfs.2025.123824
Xiang Li , Li Wang
{"title":"Retraction notice to “Highland barley attenuates high fat and cholesterol diet induced hyperlipidemia in mice revealed by 16S rRNA gene sequencing and untargeted metabolomics” [Life Sci. 334 (2023) 122142]","authors":"Xiang Li ,&nbsp;Li Wang","doi":"10.1016/j.lfs.2025.123824","DOIUrl":"10.1016/j.lfs.2025.123824","url":null,"abstract":"","PeriodicalId":18122,"journal":{"name":"Life sciences","volume":"377 ","pages":"Article 123824"},"PeriodicalIF":5.2,"publicationDate":"2025-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144564874","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
METTL3-mediated TUG1 regulation of miR-9 in doxorubicin resistance in HCC mettl3介导的TUG1调控miR-9在HCC患者阿霉素耐药中的作用。
IF 5.2 2区 医学
Life sciences Pub Date : 2025-07-02 DOI: 10.1016/j.lfs.2025.123832
Enliang Li , Rongshou Wu , Yuexiao Tang , Jun Yang , Kehao Li , Zhenduo Shao , Jiayan Mao , Jianghui Xiong , Xiu Hu , Wei Chen , Linquan Wu
{"title":"METTL3-mediated TUG1 regulation of miR-9 in doxorubicin resistance in HCC","authors":"Enliang Li ,&nbsp;Rongshou Wu ,&nbsp;Yuexiao Tang ,&nbsp;Jun Yang ,&nbsp;Kehao Li ,&nbsp;Zhenduo Shao ,&nbsp;Jiayan Mao ,&nbsp;Jianghui Xiong ,&nbsp;Xiu Hu ,&nbsp;Wei Chen ,&nbsp;Linquan Wu","doi":"10.1016/j.lfs.2025.123832","DOIUrl":"10.1016/j.lfs.2025.123832","url":null,"abstract":"<div><h3>Aims</h3><div>Hepatocellular carcinoma (HCC) is one of the most prevalent malignant human tumors and a main cause of cancer death worldwide. Drug resistance limits the use of doxorubicin (DOX), a proliferation inhibitor used to treat HCC. This study aims to reveal the molecular mechanisms underlying DOX resistance and develop more effective therapies for HCC.</div></div><div><h3>Materials and methods</h3><div>An N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) RNA immunoprecipitation sequencing-quantitative real-time polymerase chain reaction experiment was performed to assess m<sup>6</sup>A RNA methylation in HCC cells. A patient-derived xenograft mouse model was established to investigate the function of a chimeric peptide supramolecular nanoparticle system (SP94 dR/ miR-9 nanoparticles) <em>in vivo</em>.</div></div><div><h3>Results</h3><div>We found that the expression levels of <em>METTL3</em> and <em>TUG1</em> were upregulated in HCC, which was closely related to poor overall survival. Moreover, METTL3 and TUG1 depletion increased HCC cell sensitivity to DOX. <em>METTL3</em> silencing repressed <em>TUG1</em> expression in an m<sup>6</sup>A-dependent manner. Meanwhile, <em>TUG1</em> depletion sensitized HCC cells to DOX <em>via</em> EIF5A2 by upregulating miR-9. Furthermore, SP94-dR/miR-9 nanoparticles dramatically enhanced HCC cell sensitivity to DOX by regulating autophagy <em>in vitro</em> and inhibiting tumor growth <em>in vivo</em>.</div></div><div><h3>Significance</h3><div>Our data identified a novel molecular pathway comprising the METTL3-m<sup>6</sup>A-<em>TUG1</em>-miR-9-EIF5A2 signaling axis in HCC, providing new targets for future DOX resistance management.</div></div>","PeriodicalId":18122,"journal":{"name":"Life sciences","volume":"378 ","pages":"Article 123832"},"PeriodicalIF":5.2,"publicationDate":"2025-07-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144564873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Proteomics reveals crosstalk between calcium disturbance and multiple stresses facilitating lethal ventricular arrhythmias-sudden cardiac death under the co-morbidity of acute myocardial ischemia and type II diabetes mellitus 蛋白质组学揭示了钙干扰与多重应激之间的串扰,促进了急性心肌缺血和II型糖尿病合并症下致死性室性心律失常-心源性猝死
IF 5.2 2区 医学
Life sciences Pub Date : 2025-07-02 DOI: 10.1016/j.lfs.2025.123826
Ye Zhang , Xiaojun Zhang , Huishan Liang , Haiyan Li , Wei Zhang , Mengxuan Zhang , Danya Zhou , Mengting Zhu , Xudong Xiao , Junyao Lv , Guanghui Zhu , Xiaojun Yu , Minchao Lai , Dian Wang
{"title":"Proteomics reveals crosstalk between calcium disturbance and multiple stresses facilitating lethal ventricular arrhythmias-sudden cardiac death under the co-morbidity of acute myocardial ischemia and type II diabetes mellitus","authors":"Ye Zhang ,&nbsp;Xiaojun Zhang ,&nbsp;Huishan Liang ,&nbsp;Haiyan Li ,&nbsp;Wei Zhang ,&nbsp;Mengxuan Zhang ,&nbsp;Danya Zhou ,&nbsp;Mengting Zhu ,&nbsp;Xudong Xiao ,&nbsp;Junyao Lv ,&nbsp;Guanghui Zhu ,&nbsp;Xiaojun Yu ,&nbsp;Minchao Lai ,&nbsp;Dian Wang","doi":"10.1016/j.lfs.2025.123826","DOIUrl":"10.1016/j.lfs.2025.123826","url":null,"abstract":"<div><h3>Aims</h3><div>Diabetes mellitus (DM) often co-exists with myocardial ischemia (MI). Whether DM increases sudden cardiac death (SCD) susceptibility in early MI remains unclear, and the underlying mechanism needs to be further explored.</div></div><div><h3>Materials and methods</h3><div>We induced type II DM in mice to produce a co-morbidity model of DM and MI. Proteomic analysis was conducted to identify proteomic features associated with DM-SCD and MI. Additionally, a neonatal rat ventricular myocyte (NRVM) model was established under conditions of hypoxia and high glucose (HG) to elucidate the interplay between oxidative stress and endoplasmic reticulum (ER) stress in MI co-morbid with DM.</div></div><div><h3>Key findings</h3><div>Our findings revealed that DM increased the incidence of lethal ventricular arrhythmia (LVA)-SCD in early MI. Proteomic data indicate that Ca<sup>2+</sup>-mediated oxidative stress and ER stress may synergistically contribute to the increased SCD incidence. SCD mice exhibited increased mitochondrial ROS (mROS) and cytosolic ROS (cytoROS), decreased mitochondrial membrane potential (MMP) and reduced/oxidized glutathione ratio, upregulation of RyR2-S2814 phosphorylation, and increased expression of ER stress-related proteins in the ischemic myocardium. NRVMs subjected to hypoxia and HG showed cytosolic and mitochondrial Ca<sup>2+</sup> overload, excessive ROS production, and reduced intracellular K<sup>+</sup> levels. Treatment with MitoTEMPO to scavenge mROS and 4-PBA to inhibit ER stress normalized SCD-associated alterations in mice and hypoxia- and HG-associated alterations in NRVMs, preventing LVA-SCD.</div></div><div><h3>Significance</h3><div>Our study uncovers that DM increases the incidence of LVA-SCD in early MI, which is associated with the crosstalk between calcium dysregulation and multiple stresses.</div></div>","PeriodicalId":18122,"journal":{"name":"Life sciences","volume":"378 ","pages":"Article 123826"},"PeriodicalIF":5.2,"publicationDate":"2025-07-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144557624","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Human urine-derived stem cells from different donor sources ameliorate diabetic nephropathy in mice by activating autophagy and restoring mitochondrial function of podocyte 不同供体来源的人尿源干细胞通过激活自噬和恢复足细胞线粒体功能改善小鼠糖尿病肾病
IF 5.2 2区 医学
Life sciences Pub Date : 2025-07-01 DOI: 10.1016/j.lfs.2025.123831
Jie-Zhou , Ya-Yi Lin , Wei-Fen Cheng , Xi-Yan Wang , Zi-Wei Chen , Xin-Yi Jiang , Shao-Bo Li , Xiang-Cheng Zhang , Ling-Fei Yan , Lin-Xie , Jing-Yuan Li , Quan-Wen Liu
{"title":"Human urine-derived stem cells from different donor sources ameliorate diabetic nephropathy in mice by activating autophagy and restoring mitochondrial function of podocyte","authors":"Jie-Zhou ,&nbsp;Ya-Yi Lin ,&nbsp;Wei-Fen Cheng ,&nbsp;Xi-Yan Wang ,&nbsp;Zi-Wei Chen ,&nbsp;Xin-Yi Jiang ,&nbsp;Shao-Bo Li ,&nbsp;Xiang-Cheng Zhang ,&nbsp;Ling-Fei Yan ,&nbsp;Lin-Xie ,&nbsp;Jing-Yuan Li ,&nbsp;Quan-Wen Liu","doi":"10.1016/j.lfs.2025.123831","DOIUrl":"10.1016/j.lfs.2025.123831","url":null,"abstract":"<div><h3>Background</h3><div>Human urine-derived stem cells (hUSCs) are a novel type of mesenchymal stem cells (MSCs) originating from the kidney, with promising potential for personalized therapies. However, it remains unclear whether hUSCs can be successfully isolated from individuals of different ages and disease states-including healthy young individuals, healthy elderly individuals, and patients with diabetic nephropathy (DN), as well as their therapeutic potential and mechanism in DN.</div></div><div><h3>Methods</h3><div>hUSCs were isolated from healthy young men (hUSC-HY), healthy elderly men (hUSC-HE), and male DN patients (hUSC-DN), and their biological characteristics were systematically evaluated. The therapeutic effects of early-passage (P3-P5) hUSC-HY, hUSC-HE, and hUSC-DN were assessed in DN mouse models. <em>In vitro</em>, the effects of conditioned medium (CM) derived from each hUSC group on apoptosis in high glucose (HG)-injured mouse podocytes (MPC5) were assessed. To explore the underlying mechanisms, autophagy activation and mitochondrial function were further analyzed in HG-injured MPC5 cells treated with or without hUSC-CM.</div></div><div><h3>Results</h3><div>Early-passage (P0-P5) hUSC-HY, hUSC-HE, and hUSC-DN exhibited comparable biological characteristics. However, after passage 5, hUSC-HE and hUSC-DN progressively developed senescent phenotypes. Early-passage hUSC-HY, hUSC-HE, and hUSC-DN effectively improved renal function and ameliorated tissue damage in DN mice, primarily by inhibiting HG-induced podocyte apoptosis. <em>In vitro</em>, CM derived from all three hUSCs types (P3–P5) significantly attenuated HG-induced apoptosis in podocytes (MPC5 cells) by the activation of autophagy through suppression of the PI3K/AKT/mTOR and ERK/mTOR signaling pathways. Additionally, hUSCs were shown to deliver functional mitochondria to injured MPC5 cells, thereby restoring mitochondrial function and further contributing to the inhibition of podocyte apoptosis.</div></div>","PeriodicalId":18122,"journal":{"name":"Life sciences","volume":"378 ","pages":"Article 123831"},"PeriodicalIF":5.2,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144536202","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive overview of the complex gut microbiota–miRNA crosstalk in immunocompromised pediatric patients 免疫功能低下儿科患者复杂肠道微生物- mirna串扰的全面概述。
IF 5.2 2区 医学
Life sciences Pub Date : 2025-07-01 DOI: 10.1016/j.lfs.2025.123833
Regiane Nogueira Spalanzani , Thaís Muniz Vasconcelos , Lorena Bavia , Luiza Souza Rodrigues , Dany Mesa , Aline Simoneti Fonseca , Luciane Regina Cavalli , Libera Maria Dalla-Costa
{"title":"Comprehensive overview of the complex gut microbiota–miRNA crosstalk in immunocompromised pediatric patients","authors":"Regiane Nogueira Spalanzani ,&nbsp;Thaís Muniz Vasconcelos ,&nbsp;Lorena Bavia ,&nbsp;Luiza Souza Rodrigues ,&nbsp;Dany Mesa ,&nbsp;Aline Simoneti Fonseca ,&nbsp;Luciane Regina Cavalli ,&nbsp;Libera Maria Dalla-Costa","doi":"10.1016/j.lfs.2025.123833","DOIUrl":"10.1016/j.lfs.2025.123833","url":null,"abstract":"<div><div>Immunocompromised pediatric patients, particularly those diagnosed with leukemia, often experience immune suppression due to prolonged use of immunosuppressive medication and chemotherapy. Consequently, these patients are highly vulnerable to infections caused by both pathogenic and non-pathogenic microorganisms. To prevent such infections, antibiotics and antifungals are routinely administered as prophylactic treatments. However, the use of antimicrobials significantly impacts the patient's microbiota, particularly the gut microbiota, which plays a crucial role in immunomodulating the mucosa and maintaining the integrity of the intestinal epithelium. Disruption of these functions may transform the intestinal epithelium into a potential entry point for harmful microorganisms. The regulation of gut homeostasis and the composition of the intestinal microbiota have been linked to different host-derived microRNAs (miRNAs) that regulate gene expression. Intestinal epithelial cells release miRNAs into the lumen, where they modulate the growth of gut microbes and the microbiota's composition. This review summarizes current insights into the relationship between the gut microbiota and intestinal miRNAs, emphasizing their potential as diagnostic and prognostic biomarkers for immunocompromised pediatric patients.</div></div>","PeriodicalId":18122,"journal":{"name":"Life sciences","volume":"378 ","pages":"Article 123833"},"PeriodicalIF":5.2,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144560509","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rab26-mediated lysosomal translocation of eEF1A alleviates myocardial hypertrophy and cardiac remodeling rab26介导的eEF1A溶酶体易位减轻心肌肥厚和心脏重构。
IF 5.2 2区 医学
Life sciences Pub Date : 2025-07-01 DOI: 10.1016/j.lfs.2025.123830
Yifan Tong , Yutong Li , Yaguang Bi , Yajiao Liu , Xiaoping Peng , Binfeng He , Xiang Wang
{"title":"Rab26-mediated lysosomal translocation of eEF1A alleviates myocardial hypertrophy and cardiac remodeling","authors":"Yifan Tong ,&nbsp;Yutong Li ,&nbsp;Yaguang Bi ,&nbsp;Yajiao Liu ,&nbsp;Xiaoping Peng ,&nbsp;Binfeng He ,&nbsp;Xiang Wang","doi":"10.1016/j.lfs.2025.123830","DOIUrl":"10.1016/j.lfs.2025.123830","url":null,"abstract":"<div><h3>Backgrounds</h3><div>Pathological myocardial hypertrophy and cardiac remodeling are a maladaptive response to stressors such as hypertension and genetic mutations, characterized by cardiomyocyte enlargement, fibrosis, cardiomyocyte apoptosis and impaired cardiac function. Rab26, a small GTPase, plays a crucial role in vesicle trafficking, secretion and apoptosis. However, its role in myocardial hypertrophy and cardiac remodeling remains unclear.</div></div><div><h3>Methods</h3><div>Transverse aortic constriction (TAC) model was employed to induce myocardial hypertrophy and cardiac remodeling, with functional and histological assessments. Cardiac-specific Rab26 overexpression was achieved via AAV9-cTnT-Rab26 delivery, while Rab26 knockout was used for loss-of-function analysis. Molecular mechanisms were explored using protein interaction studies, fluorescence co-localization, and protease inhibition assays.</div></div><div><h3>Results</h3><div>Our findings indicated a significant downregulation of Rab26 protein expression in the disease model, while its mRNA levels remained unaltered. Notably, cardiac-specific overexpression of Rab26 led to improved cardiac function, decreased cardiac fibrosis, suppressed myocardial hypertrophy and cardiomyocyte apoptosis. Furthermore, the knockout of Rab26 aggravated myocardial hypertrophy and cardiac remodeling. At the mechanistic level, Rab26 facilitates lysosomal translocation and degradation of eEF1A. Additionally, eEF1A silencing eliminated the protective effect of Rab26 on the heart. Comprehensive evaluation revealed the critical role of the Rab26-eEF1A axis in mediating pathological myocardial hypertrophy and cardiac remodeling.</div></div><div><h3>Conclusions</h3><div>This study suggests that Rab26 prevents cardiac remodeling and dysfunction under pressure overload by promoting the lysosome translocation and degradation of eEF1A. Targeting the Rab26-eEF1A axis thus provides a potential strategy for preventing or reversing myocardial hypertrophy and cardiac remodeling.</div></div>","PeriodicalId":18122,"journal":{"name":"Life sciences","volume":"378 ","pages":"Article 123830"},"PeriodicalIF":5.2,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144560510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Regulatory mechanism of ferroptosis in acute kidney injury and potential therapeutic strategies 铁下垂在急性肾损伤中的调节机制及潜在的治疗策略
IF 5.2 2区 医学
Life sciences Pub Date : 2025-07-01 DOI: 10.1016/j.lfs.2025.123828
Wendi Zhong , Zihuang Xie , Siqi Wei , Tian Zhong , Tao Jiang
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