Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings.最新文献_第4页

Performance comparison of algorithms for finding transcription factor binding sites 寻找转录因子结合位点的算法性能比较

Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. Pub Date : 2003-03-10 DOI: 10.1109/BIBE.2003.1188949

S. Sinha, M. Tompa

引用次数: 32

Determining the asymmetries of skin lesions with fuzzy borders 边界模糊皮肤病变的不对称性判定

Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. Pub Date : 2003-03-10 DOI: 10.1109/BIBE.2003.1188955

V. Ng, Tim K. Lee, Benny Y. M. Fung

引用次数: 4

Load balancing: a case study of a pharmaceutical drug candidate database 负载平衡:一个药物候选数据库的案例研究

Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. Pub Date : 2003-03-10 DOI: 10.1109/BIBE.2003.1188973

Zina Ben-Miled, S. Li, Jesse Martin, Chavali Balagopalakrishna, O. Bukhres, Robert J. Oppelt

引用次数: 0

Predictive model for yeast protein functions using modular neural approach 基于模块化神经网络的酵母蛋白功能预测模型

Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. Pub Date : 2003-03-10 DOI: 10.1109/BIBE.2003.1188984

Doosung Hwang, F. Fotouhi, R. Finley, W. Grosky

引用次数: 1

A fast algorithm for RNA secondary structure prediction including pseudoknots 包含假结的RNA二级结构快速预测算法

Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. Pub Date : 2003-03-10 DOI: 10.1109/BIBE.2003.1188924

F. Tahi, S. Engelen, M. Régnier

引用次数: 12

Requirements of phylogenetic databases 系统发育数据库的要求

Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. Pub Date : 2003-03-10 DOI: 10.1109/BIBE.2003.1188940

Luay K. Nakhleh, Daniel P. Miranker, François Barbançon, W. H. Piel, M. Donoghue

引用次数: 29

Prostate gland and extra-capsular tissue 3D reconstruction and measurement 前列腺及囊外组织三维重建与测量

Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. Pub Date : 2003-03-10 DOI: 10.1109/BIBE.2003.1188958

F. McKenzie, Rania Hussein, Jennifer Seevinck, P. Schellhammer, J. Diaz

{"title":"Prostate gland and extra-capsular tissue 3D reconstruction and measurement","authors":"F. McKenzie, Rania Hussein, Jennifer Seevinck, P. Schellhammer, J. Diaz","doi":"10.1109/BIBE.2003.1188958","DOIUrl":"https://doi.org/10.1109/BIBE.2003.1188958","url":null,"abstract":"Currently there are little objective parameters that can quantify the success of one form of prostate surgical removal over another. Accordingly, at Old Dominion University (ODU) we have been developing a process resulting in the use of software algorithms to assess the coverage and depth of extra-capsular soft tissue removed with the prostate by the various surgical approaches. Parameters such as the percent of capsule that is bare of soft tissue and where present the depth and extent of coverage have been assessed. First, visualization methods and tools are developed for images of prostate slices that are provided to ODU by the Pathology Department at Eastern Virginia Medical School (EVMS). The visualization tools interpolate and present 3D models of the prostates. Measurement algorithms are then applied to determine statistics about extra-capsular tissue coverage. This paper addresses the modeling, visualization, and analysis of prostate gland tissue to aid in quantifying prostate surgery success. Particular attention is directed towards the accuracy of these measurements and is addressed in the analysis discussions.","PeriodicalId":178814,"journal":{"name":"Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings.","volume":"68 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2003-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131437790","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 12

MotifMiner: a general toolkit for efficiently identifying common substructures in molecules MotifMiner:用于有效识别分子中常见子结构的通用工具包

Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. Pub Date : 2003-03-10 DOI: 10.1109/BIBE.2003.1188971

M. Coatney, S. Parthasarathy

{"title":"MotifMiner: a general toolkit for efficiently identifying common substructures in molecules","authors":"M. Coatney, S. Parthasarathy","doi":"10.1109/BIBE.2003.1188971","DOIUrl":"https://doi.org/10.1109/BIBE.2003.1188971","url":null,"abstract":"Scientific research often involves examining structural relationships in molecules since scientists strongly believe in the causal relationship between structure and function. Traditionally, researchers have identified these patterns, or motifs, manually using biochemical expertise. However, with the massive influx of new biochemical data and the ability to gather data for very large molecules, there is great need for techniques that automatically and efficiently identify commonly occurring structural patterns in molecules. Previous automated substructure discovery approaches have each introduced variations of similar underlying techniques and have embedded domain knowledge. While doing so improves performance for the particular domain, this complicates extensibility to other domains. Also, they do not address scalability or noise, which is critical for certain structural domains like macromolecules. In this paper, we present MotifMiner, a general toolkit for automatically identifying common motifs in most any scientific molecular dataset. We describe both our application framework and services for identifying motifs, as well as demonstrate the flexibility of our system by analyzing several disparate domains, including protein, drug, and MD simulation datasets.","PeriodicalId":178814,"journal":{"name":"Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings.","volume":"76 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2003-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116020919","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 14

A new approach to detect similar proteins from 2D gel electrophoresis images 一种从二维凝胶电泳图像中检测相似蛋白的新方法

Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. Pub Date : 2003-03-10 DOI: 10.1109/BIBE.2003.1188945

Nawaz Khan, S. Rahman

引用次数: 3

Respiratory gating for MRI and MRS in rodents 啮齿类动物呼吸门控的MRI和MRS研究

Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. Pub Date : 2003-03-10 DOI: 10.1109/BIBE.2003.1188938

J. Garbow, J. Dugas, M. Conradi

引用次数: 8