{"title":"Comparative study on data mining classification methods for cervical cancer prediction using pap smear results","authors":"Y. Kurniawati, A. E. Permanasari, S. Fauziati","doi":"10.1109/IBIOMED.2016.7869827","DOIUrl":"https://doi.org/10.1109/IBIOMED.2016.7869827","url":null,"abstract":"The number of woman with cervical cancer in Indonesia is getting higher. Indonesia becomes the country with the highest number of women with cervical cancer in the world. Cervical cancer became the highest cause of cancer deaths in women globally. There has been a lot of research using data mining techniques with variety of different data mining models that can be used for analyzing cervical cancer. In this research, data that be used were obtained from the medical records of the Pap smear test results. There are 38 symptoms and 7 classes. Naïve Bayes, Support Vector Machines (SVM), and Random Forest Tree was used to evaluate the performance of the classifier. The performance matric that used in this study are accuracy, recall, precision, and ROC curve. Based on the performance matric, Random Forest Tree is the best classifier among other classifiers to classify Pap smear results.","PeriodicalId":171132,"journal":{"name":"2016 1st International Conference on Biomedical Engineering (IBIOMED)","volume":"55 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126268383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Feature extraction for palmprint recognition using kernel-PCA with modification in Gabor parameters","authors":"M. Kusban, A. Susanto, O. Wahyunggoro","doi":"10.1109/IBIOMED.2016.7869820","DOIUrl":"https://doi.org/10.1109/IBIOMED.2016.7869820","url":null,"abstract":"Palmprint recognition method is part of the biometric system that has a significant impact on the advancement of civilization, especially in the areas of sensing identity the person. To get the reliable system, the selection of actions to be taken include choosing a filter of skeleton method, selecting the scale orientation of Gabor method, and using appropriate a dimension reduction. The results show that the method of kernel fisher analysis (KFA), kernel principal component analysis (KPCA), linear discriminant analysis (LDA), and principal component analysis (PCA) became a leading candidate from dimension reduction. The research shows that the use of skeleton filter forwarded by scale orientation of Gabor by and the use of kPCA give better the equal error rate (EER) when compared with other researchers the same field.","PeriodicalId":171132,"journal":{"name":"2016 1st International Conference on Biomedical Engineering (IBIOMED)","volume":"69 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117206681","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Segmentation of malaria parasite candidates from thick blood smear microphotographs image using active contour without edge","authors":"Sekar Rini Abidin, U. Salamah, A. Nugroho","doi":"10.1109/IBIOMED.2016.7869824","DOIUrl":"https://doi.org/10.1109/IBIOMED.2016.7869824","url":null,"abstract":"Malaria is a serious health problem in Indonesia caused by malaria parasites. Early detection of Malaria is an important step to an effective treatment. Malaria parasite identification should be carried out based on observation on at least 100 fields view strong magnification of thick blood smears. Malaria parasite detection process is usually carried out with a microscope observation. But it consumes too much time and the number experts are limited. To overcome these obstacles, we developed a computer aided diagnosis system to automatically detecting malaria parasites. Parasite image segmentation is an important step in the detection process. But segmentation of malaria parasite that consists of a nucleus and cytoplasm in a thick blood smear is not easy because the boundary between object and background is not clear and has a low contrast. This study proposed a solution to the problem of segmentation of malaria candidate parasite candidates from thick blood smears. The proposed method focused on image enhancement and segmentation steps. Image enhancement consists of lowpass filtering to reduce noise and contrast stretching to increase contrast. Segmentation is used to detect object using active contour without edge, then erosion, dilation, masking, contrast stretching, and thresholding. The result showed that the proposed method is capable to segment malaria parasite candidates from thick blood smear with 97.57% accuracy, 12.04% (283 pixels) false negative rate (FNR), and 6.87% (202 pixels) false discovery rate (FDR), from 19600 pixels total in each image.","PeriodicalId":171132,"journal":{"name":"2016 1st International Conference on Biomedical Engineering (IBIOMED)","volume":"28 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127106553","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kurnianingsih, L. Nugroho, Widyawan, Lutfan Lazuardi, A. S. Prabuwono
{"title":"Emergency alert prediction for elderly based on supervised learning","authors":"Kurnianingsih, L. Nugroho, Widyawan, Lutfan Lazuardi, A. S. Prabuwono","doi":"10.1109/IBIOMED.2016.7869816","DOIUrl":"https://doi.org/10.1109/IBIOMED.2016.7869816","url":null,"abstract":"At the older age, the likelihood of disability increases and hence the increasing need for long-term care and facilities to assist elderly people who endure gradual loss of body function. Early detection of changes in health condition of elderly can increase safety for elderly people in emergency conditions. Alert prediction can be viewed as an assistive technology that will deliver appropriate escalation in the earliest time so that elderly can receive immediate responses. Supervised learning can be used as a tool to predict alert in emergency condition by training historical data of elderly behaviors and conditions. This paper proposed emergency alert prediction using supervised learning algorithms. Three algorithms of supervised learning, namely deep learning, k-NN, and LVQ were used to simulate the proposed system. The objective of this paper is to investigate the performance of three algorithms in making emergency alert prediction for elderly living independently. We conducted experiments for 30 days to elderly living independently and we obtained 1038 datasets. The simulation results showed deep learning performed the best accuracy 99.57% correct. Whereas k-NN obtained the best accuracy 90.79% correct, and LVQ obtained the best accuracy 80.32%.","PeriodicalId":171132,"journal":{"name":"2016 1st International Conference on Biomedical Engineering (IBIOMED)","volume":"214 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121934522","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Pulmonary crackle feature extraction using tsallis entropy for automatic lung sound classification","authors":"Achmad Rizal, Risanuri Hidayat, H. A. Nugroho","doi":"10.1109/IBIOMED.2016.7869823","DOIUrl":"https://doi.org/10.1109/IBIOMED.2016.7869823","url":null,"abstract":"pulmonary crackle sound is produced by an abnormality in the respiratory tract. Pulmonary crackle sound is one of lung sound that is discontinuous, short duration and appears on the inspiratory phase, expiratory phase or both. Various methods are used by researchers to detect crackle sound automatically, for example using entropy measurement. Tsallis entropy is a measure of the entropy that has nonextensivity property. Tsallis entropy is often used to measure rapidly changing signals. Crackle sound has both of properties, so hopefully, Tsallis entropy can be utilized as feature extraction techniques for pulmonary crackle sound. The test results showed the use of Tsallis entropy with nonextensivity order of q = 2, 3, and 4 produce the highest accuracy. Using MLP and 3fold crossvalidation, an accuracy of 95.35%, Sensitivity of 90.48%, and 100% Specificity are achieved. The advantage of this method is the fewer number of features produced and simple computation. Tests using data classes and the number of larger data required in future studies.","PeriodicalId":171132,"journal":{"name":"2016 1st International Conference on Biomedical Engineering (IBIOMED)","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130490471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Comparison of pre- and post-reconstruction denoising approaches in positron emission tomography","authors":"Sicong Yu, H. Muhammed","doi":"10.1109/IBIOMED.2016.7869821","DOIUrl":"https://doi.org/10.1109/IBIOMED.2016.7869821","url":null,"abstract":"In Positron Emission Tomography (PET), image quality is highly degraded by noise. Therefore, two main PETimage denoising approaches can be used: pre- and postreconstruction denoising. In the pre-reconstruction approach the PET sinogram is denoised before forwarding it to the image reconstruction algorithm. On the other hand, the reconstructed PET-image is denoised in the post-reconstruction approach. In this study, comparison of image quality of the resulting images of the pre- and post-reconstruction approaches is performed. In both types of approaches, the Gaussian filter, the Non-Local Means filter (NLM), the Block-Matching and 3D filter (BM3D), the K-Nearest Neighbors Filter (KNN) and the Patch Confidence K-Nearest Neighbors Filter (PCkNN) are utilized. These approaches are evaluated on a simulated PET-phantom dataset, a real-life physical thorax-phantom PET dataset as well as a reallife MicroPET-scan dataset of a mouse. The performance is measured using the Signal-to-Noise Ratio (SNR) in addition to the Contrast-to-Noise Ratio (CNR) in the resulting images.","PeriodicalId":171132,"journal":{"name":"2016 1st International Conference on Biomedical Engineering (IBIOMED)","volume":"34 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114213853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dian Hapsari, A. E. Permanasari, S. Fauziati, Ida Fitriana
{"title":"Management information systems development for veterinary hospital patient registration using first in first out algorithm","authors":"Dian Hapsari, A. E. Permanasari, S. Fauziati, Ida Fitriana","doi":"10.1109/IBIOMED.2016.7869829","DOIUrl":"https://doi.org/10.1109/IBIOMED.2016.7869829","url":null,"abstract":"Registration system is one of the most important elements in an organization or institution that involves the presence of customers and one by one services. Nowadays, with the development of technology, services process in an institution become more effective and efficient. One of the institutions that require the development of this technology, in the form of hospital information management system, is the veterinary hospital. The conventional system has many shortcomings include allowing an error in writing the patient data also the patient registration recaps is less effective and more time consuming. Therefore, a prototype of RSH management information system was made as an ilustration in the design of hospital information management system. The focus of this study is the patient registration system which use First In First Out (FIFO) algorithms where the patient who came first to the hospital is the one who enrolled first.","PeriodicalId":171132,"journal":{"name":"2016 1st International Conference on Biomedical Engineering (IBIOMED)","volume":"134 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123210903","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Comparison of radialis sphygmomanometer in evaluating the blood pressure of healthy volunteers","authors":"H. Rachmat","doi":"10.1109/IBIOMED.2016.7869817","DOIUrl":"https://doi.org/10.1109/IBIOMED.2016.7869817","url":null,"abstract":"In this study, we compared the blood pressure measurement that obtained by a radialis sphygmomanometer with two others non-invasive sphygmomanometer types i.e. an aneroid sphygmomanometer and a brachial sphygmomanometer. The aim of this study was to evaluate statistically the blood pressure values of a radialis sphygmomanometer relative two other types of sphygmomanometer. This study was performed as a validation test before modifying the existing display-based radialis sphygmomanometer to a voice-based radialis sphygmomanometer. By developing the radialis sphygmomanometer with voice output, we believed that a blind people can be possible to measure the blood pressure easily, independently and periodically. To collect the data measurements, an experience nurse measured two blood pressure values i.e. systolic and diastolic of 30 healthy adult volunteers (17 female, 13 male; mean age 40.87±13.97 years, range: 16-75 years) with three diffent types of sphygmomanometer. A mercury sphygmomanometer was used at first and continued by a brachial sphygmomanometer and a radialis sphygmomanometer in order. Data were then analyzed statically using one way ANOVA in SPSS 18. The statistic results showed that the average measurement values were equal among three types of sphygmomanometer with significance (α) of systole and diastole bigger than 0.05 i.e. 0.055 and 0.178, respectively.","PeriodicalId":171132,"journal":{"name":"2016 1st International Conference on Biomedical Engineering (IBIOMED)","volume":"24 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125555290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M. Rahmawaty, H. A. Nugroho, Yuli Triyani, I. Ardiyanto, I. Soesanti
{"title":"Classification of breast ultrasound images based on texture analysis","authors":"M. Rahmawaty, H. A. Nugroho, Yuli Triyani, I. Ardiyanto, I. Soesanti","doi":"10.1109/IBIOMED.2016.7869825","DOIUrl":"https://doi.org/10.1109/IBIOMED.2016.7869825","url":null,"abstract":"Ultrasonography (USG) is a popular imaging modality because of its flexibility, non-invasion, non-ionisation and low cost. A breast ultrasound used to detect and classify abnormalities of the breast mass. However, the diagnosis is very subjective because it depends on the ability of the radiologist. In order to eliminate operator dependency and to improve the diagnostic accuracy, a computerised system is necessary to do the feature extraction and the classification of the breast nodule. This research proposes a classification of breast USG images by using some texture features into two classes. The dataset consists of 57 USG images which grouped into 27 anechoic cases and 30 hypoechoic cases. An initial step of image pre-processing is conducted to enhance the detection capability. Afterwards, followed by some methods of morphological operation, region growing active contour and histogram equalization. The feature extraction method used texture analysis, which is histogram, gray level co-occurrence matrix (GLCM) and fractal Brownian motion (FBM). Finally, Multilayer Perceptron (MLP) classification method is used to classify anechoic nodule from hypoechoic nodule. The result shows that the proposed method achieved the accuracy of 91.23%, sensitivity of 95.83%, specificity of 87.88%, Positive Predictive Value (PPV) of 85.19% and Negative Predictive Value (NPV) of 96.67%. This suggest that the proposed method is excellent in analyzing breast USG images.","PeriodicalId":171132,"journal":{"name":"2016 1st International Conference on Biomedical Engineering (IBIOMED)","volume":"51 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130709460","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sinantya Feranti Anindya, H. Rachmat, E. Sutjiredjeki
{"title":"A prototype of SSVEP-based BCI for home appliances control","authors":"Sinantya Feranti Anindya, H. Rachmat, E. Sutjiredjeki","doi":"10.1109/IBIOMED.2016.7869810","DOIUrl":"https://doi.org/10.1109/IBIOMED.2016.7869810","url":null,"abstract":"In this research, a prototype of home appliances control system based on steady-state visually evoked potential (SSVEP) is designed. The system is designed using two SSVEP datasets with different characteristics: the first dataset consists eight frequencies within 6-12 Hz, while the second consists frequencies of 8, 14, and 28 Hz. The EEG signal from the datasets is processed using three components: windowed-sinc digital filter for pre-processing, FFT for feature extraction, and SVM for feature classification. Then, the signal processing result is used for controlling three LEDs, which represent the home appliances to be controlled. Based on the test conducted on both datasets, using RBF kernel for SVM results in higher classification accuracy (83.26% and 71.67%) compared to using linear kernel (36.84% and 65%). In addition, the result shows the designed system works best when SSVEP frequencies within low range (i.e. 14 Hz and below) is used.","PeriodicalId":171132,"journal":{"name":"2016 1st International Conference on Biomedical Engineering (IBIOMED)","volume":"5 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116444913","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}