Journal of Pure and Applied Microbiology最新文献

{"title":"The Ability of the Indigenous Bacteria Chromobacterium haemolyticum strain W15 to Degrade Chromium (Cr) and Lead (Pb) in Liquid Coal Waste","authors":"Diva Chantya Nidyananda, Slamet Isworo","doi":"10.22207/jpam.18.3.17","DOIUrl":"https://doi.org/10.22207/jpam.18.3.17","url":null,"abstract":"The use of coal as a raw material for power plants has a good economic impact, but it also has a detrimental environmental impact, particularly due to the presence of Cr and Pb, heavy metals with bioaccumulation and biomagnification qualities. Efforts to control Pb and Cr in liquid coal waste can be achieved by bioremediation. The goal of this study is to screen indigenous bacteria, identify, and test biodegradation on the best bacteria capable of degrading Cr and Pb. Bacterial screening is done experimentally in the lab. Bacterial identification is done using morphological, biochemical, and molecular genetic methods. Using atomic absorption spectroscopy to validate Cr and Pb biodegradation research. Biodegradation experiments revealed that the efficacy of indigenous bacteria reduced Pb by 216% (0.238 ppm to 0.11 ppm) and Cr by 195% (0.34 ppm to 0.174 ppm). The findings of biochemical, morphological, and molecular genetic studies revealed that the top bacterial strains were up to 96% related. using Chromobacterium haemolyticum strain W15. Chromobacterium haemolyticum strain X, an indigenous bacteria capable of degrading Cr and Pb, was successfully isolated from liquid waste.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141808389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Enhancing Abiotic Stress Tolerance in Fruit Trees Using Microbial Biostimulants","authors":"Hibah M. Albasri, A. Mawad, E. S. Aldaby","doi":"10.22207/jpam.18.3.18","DOIUrl":"https://doi.org/10.22207/jpam.18.3.18","url":null,"abstract":"Global climate change has significantly reduced the yield of many crops due to various abiotic stressors. These stressors include water-related issues such as drought and flooding, thermal changes like extremely low and high temperatures, salinity, and adverse soil pH conditions including alkalinity and acidity. Biostimulants have emerged as promising and effective tools for mitigating the damage caused by these abiotic stressors in plants, ultimately enhancing both the quantity and quality of crops. Biostimulants are naturally derived substances that include humic acid, protein hydrolysates, nitrogenous compounds, seaweed extracts, beneficial bacteria, and molds. Even at low concentrations, biostimulants play a critical role in activating important plant enzymes, inducing antioxidant defenses, improving water relations and photosynthetic activity, stimulating hormone-like activities (particularly auxins, gibberellins, and cytokinins), and modulating root system development. This review discusses the physiological effects of microbial biostimulants on the quality and productivity of fruit crops, as well as their experimental applications.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141809611","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Enhancement of Plant Growth with Plant-Based Compost and the Heterotrophic Azotobacter and Streptomyces Inoculation under Greenhouse Conditions","authors":"M. O. Albureikan","doi":"10.22207/jpam.18.3.13","DOIUrl":"https://doi.org/10.22207/jpam.18.3.13","url":null,"abstract":"Compost is a natural and sustainable way to improve soil fertility and enhance plant growth. Moringa leaves have high mineral, cytokinin, and vitamin content which are useful for growth so that they can be used as organic fertilizer. Azotobacter and Streptomyces are from soil and have many biological activities. This study aimed to detect the importance of bioagents formula with Moringa Compost (MC) to enhance plant growth in poor sterile soil and plants were irrigated with half strength of Hoagland nutrient solution. Moringa leaves were collected and cleaned, and organic compost was prepared and analyzed for microbial and chemical composition. The prepared MC was rich in nitrogen and minerals and had high content of bacteria and fungi. The two bioagents used were isolate MB5 and MB11 which were characterized and molecular identified as Azotobacter chroococcum MB5 and Streptomyces griseus MB11. The free-living A. chroococcum can fix atmospheric nitrogen while Streptomyces is a filamentous bacterium with a high ability to produce secondary metabolites. The addition of 20% MC to soil increased soil EC and microbial counts compared to MC-free soil. Moreover, inoculation of soil with either AZ or ST increased the microbial counts and soil EC and the clearest increase was in the case of inoculation of soil with MC+AZ+ST. It also found that MC extract alone with the bacterial filtrates increases seed germination of Phaseolus vulgaris L. (common bean), which is a herbaceous annual worldwide plant, grown for its edible dry seeds or green unripe pods. In this regard, inoculation of soil with inoculum of both A. chroococcum MB5, and S. griseus MB11, in the presence of MC has the most pronounced effect and enhances both the growth, fresh and dry weights, leaf number, plant height, and root length of P. vulgaris grown under greenhouse conditions for one month and chemical content of the plant protein carbohydrates, P, N, Ca++ and K+. In conclusion, the combined application A. chroococcum MB5 and S. griseus MB11, as a biofertilizers with Moringa compost is recommended to enhance P. vulgaris growth. The use of these biofertilizers can reduce the use of chemical fertilizers, which can have detrimental effects on soil and the environment. Therefore, further research on the inoculation and application of these microorganisms with MC is essential for sustainable agriculture.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141815019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Survival Strategy, Metabolic Potential and Taxonomic Reframe of Kocuria polaris","authors":"Syed Raziuddin Quadri","doi":"10.22207/jpam.18.3.11","DOIUrl":"https://doi.org/10.22207/jpam.18.3.11","url":null,"abstract":"Antarctica is renowned as the most inhospitable environment where microorganisms are thriving in the frontiers of life. In the past few years, many novel bacterial species have been reported from the Antarctic environment. During taxonomic re-evaluation of novel bacterial species from Antarctica, it was noticed that Kocuria polaris shared high 16S rRNA gene sequence similarity with Kocuria rosea. In the present study, the taxonomic position, metabolic potentials, and stress survival strategy of K. polaris were evaluated through genome analysis. K. polaris encodes genes for glycolysis, citrate cycle, pentose phosphate pathway, dissimilatory nitrate reduction, assimilatory sulfate reduction, etc. In addition, K. polaris also encodes genes for cold and salt stress. The 16S rRNA gene sequence extracted from K. polaris and K. rosea genomes showed 99.7% similarity. In the phylogenomic tree, K. polaris and K. rosea clustered together. The average nucleotide identity and digital DNA–DNA hybridization values between K. polaris and K. rosea exceeded the threshold (95-96% for ANI and 70% for dDDH) value for distinguishing species, showing that they are similar species. The present study shed light on K. polaris survival strategy in extreme conditions. We further propose to reclassify Kocuria polaris as a later heterotypic synonym of Kocuria rosea.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141815851","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Molecular Approach for Screening and Identification of Food Containments using Colony PCR","authors":"Aarya Harshal Suryawanshi, Sai Sree Thanay Allam, Satwik Korukonda, Satyashila Kamble, Bhavithavya Kumar Machavarapu, Nagavenkat Sriperambuduru, P. Vemuri","doi":"10.22207/jpam.18.3.12","DOIUrl":"https://doi.org/10.22207/jpam.18.3.12","url":null,"abstract":"Food is the primary cause for diseases in humans and carries high risk pathogens. Assessment of the safety in foods is needed to validate the presence of pathogenic bacteria. We used colony PCR for this approach to detect foodborne pathogens such as Escherichia coli, Lactobacillus and Bacillus cereus. Suitable primers were selected based on specific gene 1040 for Escherichia coli, gene S2 for Lactobacillus, and gene NVF for Bacillus cereus. Agarose gel electrophoresis is used for the detection of amplified products against a suitable marker. ImageJ is used for DNA band analysis, enabling precise quantification, normalization, and statistical comparisons. These studies have established a promising role in the detection of pathogens in various environmental samples. The insights gained from this study may serve as the foundation for rapid detection of foodborne diseases in the food industry.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141816615","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Identification and Antimicrobial Susceptibility Patterns of Neisseria gonorrhoeae, Ureaplasma spp. and Mycoplasma spp. Isolated from Tribal Women","authors":"Juhi, Vaishali Halwai, Rambir Singh, Sona Singh, Neha Jain, Sosan Xess, Poonam Sharma","doi":"10.22207/jpam.18.3.07","DOIUrl":"https://doi.org/10.22207/jpam.18.3.07","url":null,"abstract":"Sexually transmitted infections (STIs) are a major public health problem worldwide with significant social and economic implications. Effective control and prevention strategies necessitate a thorough understanding of the prevalence, isolation, and identification of STI pathogens. The present study aims to provide a comprehensive analysis of the isolation, identification, prevalence, and antimicrobial susceptibility pattern of STI pathogens based on culture method analysis. Endocervical /vaginal swab samples from female patients symptomatic for STI were cultured on different selective and differential media and pathogens were identified by colony morphology and biochemical tests. Antimicrobial Susceptibility Test (AST) of isolated and identified culture pathogen was performed by using Kirby-Bauer disc diffusion method. Among 209 endocervical/vaginal swab samples from symptomatic patients, 126 (60.28%) tested positive and 83 (39.71%) negative. Ureaplasma spp. (n = 100) was the most prevalent isolate, constituting 79.36% of culture-positive samples, followed by N. gonorrhoea (n = 99) at 78.57%, and Mycoplasma spp. (n = 41) at 32.54% individually and in combination. AST analysis revealed erythromycin (74%), ofloxacin (69%), and roxithromycin (64%) as the most resistant antibiotics for Ureaplasma spp. N. gonorrhoea showed the highest resistance to cefixime (78.79%), followed by ofloxacin (75.76%) and erythromycin (69.7%). Azithromycin and erythromycin exhibited 100% resistance against Mycoplasma spp. The study provides information on the prevalent bacterial pathogens involved in STIs among women in Anuppur and Shahdol districts, Madhya Pradesh. Understanding the diversity, distribution patterns and antibiotic sensitivity of these pathogens is crucial for developing targeted interventions and effective prevention strategies in such resource-limited areas.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141816179","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Novel phytosterol with Antimicrobial Potential of Digera muricata Mart. from Chittorgarh Region, India","authors":"N. Tomer, Anil Kumar Sharma, M. Ali, Manas Mathur, Hariom Nagar, Ramgopal Dhakar, Amit Sen, Z. Zaidi, Sarmad Moin","doi":"10.22207/jpam.18.3.14","DOIUrl":"https://doi.org/10.22207/jpam.18.3.14","url":null,"abstract":"Digera muricata Mart, a plant having therapeutic characteristics that has been utilised traditionally, belongs to the Amaranthaceae family, and a promising source of specific natural products utilized as antioxidant, prophylactic, antimicrobial, anthelmintic, anti-diabetic, and allelopathic agent. In the present study, a biologically active phytosterol was isolated from Digera muricata Mart. The isolated compound was characterized by 13C, 1H NMR, FTIR, and HRMS. Characterization of the isolate was done by antimicrobial assay, and molecular docking. The antimicrobial potential of the isolated phytosterol (50 µl) against Streptococcus pyogenes was found to be maximum (ZOI-20.0 ± 1.0), followed by Streptococcus agalactiae (ZOI-11.3±1.5), Candida albicans (ZOI- 09.0 ± 1.0), Klebsiella pneumonia (ZOI-8.6 ± 1.5) and Escherichia coli (ZOI-8.6 ± 1.5). The molecular docking results indicate that the phytosterol binds to the receptor 1AI9 at the 32th and 58th positions; 1KZN receptor at the 76th position, the 5L3J receptor at the 46th (ASN) and 136th (ARG) position; 7WIJ receptor at the 419th (ARG) and 582th (ASP) and 585th (ASN) positions.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141816785","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Isolation and Identification of Isolate, S1 with High Biotransformation Potential of Ferulic Acid to Vanillin","authors":"Nagaraju Bathini, Sai Krishna Esampally, Premsagar Korripally, Vishnuvardhan Reddy Sultanpuram, T. Mothe","doi":"10.22207/jpam.18.3.09","DOIUrl":"https://doi.org/10.22207/jpam.18.3.09","url":null,"abstract":"Nine actinobacterial isolates were purified from the sediment sample of Kogilvai village, Warangal, Telangana, based on their capability to grow on the minimal medium with Ferulic acid (FA) as only Carbon (C) source. FA to Vanillin conversion capacity of these isolates was identified by Thin-layer chromatography (TLC). Biotransformation of FA to Vanillin was high by four isolates, S1, S3, O3 and O4 when compared to other five isolates (O1, O2, S2, S4 and S5) with initial pH 7 in basal medium. Among these four isolates, optimal and rapid FA to Vanillin bioconversion of 140 mg/L was shown by isolate S1 with UV-spectrophotometry. Its conversion was confirmed by High Performance Liquid Chromatography (HPLC) analysis with retention time of 2.9 min after 28hrs of incubation at 37°C with 1g/L ferulic acid in the medium with 150 rpm. Isolate S1 could utilize Lactose, Maltose, Glycerol, Fructose, Galactose, Sucrose, Dextrose, L-Arabinose, ONPG, Esculin and not other carbohydrates present in the Himedia Hicarbo kit. Molecular characterization showed that 16S rDNA gene sequence of isolate S1 was 98.27% similar to Limosilactobacillus fermentum CECT 562 with completeness of 96.7% and was identified as Limosilactobacillus sp. 16S rDNA gene sequence of isolate S1 was submitted to NCBI GenBank and its accession number was OR136396. As this isolate has high potential of FA to Vanillin biotransformation capacity, it can be further explored to be used for industrial setups for commercial exploitation.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141814616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"In silico Molecular Docking of Cyclic Peptides against TEM-1 Beta-Lactamases for Effective Antimicrobial Drug Development","authors":"A. Sowmiya, S. Jayakodi, K.A. Selvam, K. Sangeetha","doi":"10.22207/jpam.18.3.16","DOIUrl":"https://doi.org/10.22207/jpam.18.3.16","url":null,"abstract":"Targeting the class A Beta lactamases Omega loop is an ideal way to combat drug resistance because of its significant role in the catalytic activity and deacylation process inhibition. Therefore, the molecular docking approach with computerized peptide-based in silico screening has been applied for the identification of inhibitors of TEM-type βLs. Among the subjected 105 peptides, Chrombacin (-47.8 KJ/mol), Gassericin A (-35.7 KJ/mol), Duramycin (-34.1 KJ/mol), Brevinin-1DYa (-34.0 KJ/mol), Amoebapore A (-31.2 KJ/mol), Mundticin ATO6 (-29.0 KJ/mol), Lactocyclicin Q (-26.3 KJ/mol), Cinnamycin (-25.9 KJ/mol showed highest binding energy. Among the peptides that showed the highest docking score Elafin, Cinnamycin, Duramycin interacted with Lys 73 of the α domain of catalytic residues of TEM-1 Beta lactamases, whereas Taromycin A, Gassericin A interacted with Lys 234 of the β domain, depicting a strong inhibition and also exhibited desirable physicochemical properties. Hence further in vitro examination of these cyclic peptides against the resistant strains is warranted to help design further novel inhibitors based on their scaffolds and also for the development of an effective drug combination regime.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141817850","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Isolation of α-Amylase Producing Microorganisms from Soil of Kachchh, Gujarat","authors":"Mayur Morbia, Archana Pandey, Priti Mahla, Surendra Gohil","doi":"10.22207/jpam.18.3.10","DOIUrl":"https://doi.org/10.22207/jpam.18.3.10","url":null,"abstract":"The purpose of this study is to explore the soil of the Gujarat, Kachchh region to identify amylase-producing bacteria and characterize them using molecular methods. The unique ecological characteristics of the Kachchh region may facilitate the isolation of these bacteria. Samples were collected from multiple locations within the Kachchh District, including Gandhidham, Rapar, Bhuj, Nakhatrana, Mandvi, and Mundra Talukas. These samples were then screened to isolate amylase-producing bacteria. A total of 27 different types of colonies were identified, out of which 16 exhibited amylase production (M1-M16). Out of 27 colonies identified, 16 showed amylase production. Strains M2, M7, and M13 exhibited high amylase activity, with M2 showing a consistent increase over 72 hours, making it a strong candidate for amylase production. Further identification of M2 stain identified M2 as a Gram-positive, spore-forming, capsulated, and motile bacillus, specifically Bacillus licheniformis. This was confirmed through DNA sequencing and analysis in the NCBI database, which showed a 99.15% similarity with Bacillus licheniformis. The study concludes that Soil in Kachchh is rich with microorganisms that produce amylase, an enzyme with diverse industrial applications. These organisms are valuable for sectors like food, textiles, paper, detergents, pharmaceuticals, and biofuel production.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141815346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}