Journal of Phycology最新文献

Population genetics of the freshwater red alga Batrachospermum gelatinosum (Rhodophyta) I: Frequent intragametophytic selfing in a monoicous, haploid-diploid species. 淡水红藻 Batrachospermum gelatinosum（红藻纲）的种群遗传学 I. 单体-单倍体-二倍体物种的频繁叶内自交：一个单体、单倍体-二倍体物种中频繁的叶内自交。

IF 2.8 3区生物学

Journal of Phycology Pub Date : 2024-10-28 DOI: 10.1111/jpy.13510

Sarah J Shainker-Connelly, Roseanna M Crowell, Solenn Stoeckel, Morgan L Vis, Stacy A Krueger-Hadfield

{"title":"Population genetics of the freshwater red alga Batrachospermum gelatinosum (Rhodophyta) I: Frequent intragametophytic selfing in a monoicous, haploid-diploid species.","authors":"Sarah J Shainker-Connelly, Roseanna M Crowell, Solenn Stoeckel, Morgan L Vis, Stacy A Krueger-Hadfield","doi":"10.1111/jpy.13510","DOIUrl":"https://doi.org/10.1111/jpy.13510","url":null,"abstract":"Life cycles with a prolonged haploid phase are thought to be correlated with greater rates of selfing and asexual reproduction. In red algae, recent population genetic studies have aimed to test this prediction but have mostly focused on marine species with separate sexes. We characterized the reproductive system of the obligately monoicous (i.e., hermaphroditic) freshwater red alga Batrachospermum gelatinosum and predicted that we would find genetic signatures of uniparental reproduction because of its haploid-diploid life cycle. We sampled 18 sites and genotyped 311 gametophytes with 10 polymorphic microsatellite loci to describe the reproductive system. Genotypic richness was low (<0.5) and pareto β values (describing clonal membership) were <0.7 for most sites. In taxa with separate sexes, these patterns are typically indicative of asexual reproduction. However, the genetic consequences of selfing in monoicous gametophytes are indistinguishable from those caused by asexual processes. Since we sampled gametophytes and have not yet genotyped the chantransia (i.e., the diploid phase), we interpreted low diversity as a signature of intragametophytic selfing. Additionally, to understand the factors that drive selfing, we tested latitude and several other environmental variables, but none was significantly correlated with the genetic variation we observed. Nevertheless, future studies should genotype the chantransia to measure observed heterozygosity among other summary statistics to disentangle the effects of selfing versus asexual reproduction. Together, these data, coupled with further characterization of abiotic factors that influence population genetic patterns, will allow us to test potential drivers of reproductive system evolution.","PeriodicalId":16831,"journal":{"name":"Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142502636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Clonality contributes to the spread of Avrainvillea lacerata (Bryopsidales, Chlorophyta) in Hawai'i. 克隆性有助于 Avrainvillea lacerata（Bryopsidales，绿藻纲）在夏威夷的传播。

IF 2.8 3区生物学

Journal of Phycology Pub Date : 2024-10-28 DOI: 10.1111/jpy.13508

Brinkley M Thornton, Heather L Spalding, Solenn Stoeckel, Melissa L Harris, Rachael M Wade, Stacy A Krueger-Hadfield

{"title":"Clonality contributes to the spread of Avrainvillea lacerata (Bryopsidales, Chlorophyta) in Hawai'i.","authors":"Brinkley M Thornton, Heather L Spalding, Solenn Stoeckel, Melissa L Harris, Rachael M Wade, Stacy A Krueger-Hadfield","doi":"10.1111/jpy.13508","DOIUrl":"https://doi.org/10.1111/jpy.13508","url":null,"abstract":"The relative rates of sexual versus asexual reproduction influence the partitioning of genetic diversity within and among populations. During range expansions, asexual reproduction often facilitates colonization and establishment. The arrival of the green alga Avrainvillea lacerata has caused shifts in habitat structure and community assemblages since its discovery in 1981 offshore of O'ahu, Hawai'i. Field observations suggest this species is spreading via vegetative reproduction. To characterize the reproductive system of A. lacerata in Hawai'i, we developed seven microsatellite loci and genotyped 321 blades collected between 2018 and 2023 from three intertidal sites at Maunalua Bay and 'Ewa Beach. We observed one to four alleles at multiple loci, suggesting A. lacerata is tetraploid. Each site was characterized by high genotypic richness (R > 0.8). However, clonal rates were also high, suggesting the vegetative spread of A. lacerata plays a significant role. The importance of clonal reproduction for the persistence of A. lacerata in Hawai'i is consistent with the ecological data collected for this species and observations of other abundant macroalgal invaders in Hawai'i and other regions of the world. These data demonstrate the necessity for implementing appropriate population genetic methods and provide insights into the biology of this alga that will contribute to future studies on effective management strategies incorporating its reproductive system. This study represents one of the few that investigate green algal population genetic patterns and contributes to our understanding of algal reproductive system evolution.","PeriodicalId":16831,"journal":{"name":"Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142502634","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Multigene phylogenetics of Sargassum (Phaeophyceae) revealed low molecular diversity in contrast to high morphological variability in the NE Atlantic Ocean. 马尾藻（Phaeophyceae）的多基因系统学显示，东北大西洋的分子多样性较低，而形态变异性较高。

IF 2.8 3区生物学

Journal of Phycology Pub Date : 2024-10-26 DOI: 10.1111/jpy.13517

Daniel Álvarez-Canali, Marta Sansón, Carlos Sangil, Ana Tronholm

{"title":"Multigene phylogenetics of Sargassum (Phaeophyceae) revealed low molecular diversity in contrast to high morphological variability in the NE Atlantic Ocean.","authors":"Daniel Álvarez-Canali, Marta Sansón, Carlos Sangil, Ana Tronholm","doi":"10.1111/jpy.13517","DOIUrl":"https://doi.org/10.1111/jpy.13517","url":null,"abstract":"Sargassum species play a key role in habitat formation in tropical and subtropical regions; however, species identification has been hampered by the phenological plasticity exhibited in response to environmental conditions and life history. Molecular phylogenetics has challenged taxa circumscriptions and proven critical in delimiting species in this genus. Yet, the Atlantic species of Sargassum remain poorly understood, and recent studies have shown low molecular diversity between the species in the NW Atlantic. Here, we expand the taxon sampling to the NE Atlantic to assess the diversity of Sargassum in the Atlantic basin, based on a comprehensive morphological and multigene approach. We selected genes commonly used in delineating species in this genus (ITS2, rbcLS, cox3, mtsp) and explored additional markers (cox2, nad6, psbC, clpC, atpB) to infer the phylogenetic relationships between the morphospecies observed in the NE Atlantic. Phylogenetic analyses using single-gene and multigene alignments including 185 new sequences confirmed the low molecular diversity and supported the distinction of a single clade in Sargassum section Sargassum of N Atlantic benthic species. In contrast, morphological analysis resulted in the identification of 10 species and three new morphospecies that we described here but opt not to equate to species until further molecular evidence is available. Our results were congruent with previous findings from the NW Atlantic and highlight the morphological and ecological diversity of Sargassum in the Atlantic. These results suggest a recent colonization and incipient speciation of Sargassum in the Atlantic basin and showcase the need of further high-throughput analyses.","PeriodicalId":16831,"journal":{"name":"Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142502635","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Assessing climatic conditions and biotic interactions shaping the success of Cystoseira foeniculacea early-life stages. 评估气候条件和生物相互作用对 Cystoseira foeniculacea 早期生命阶段的影响。

IF 2.8 3区生物学

Journal of Phycology Pub Date : 2024-10-23 DOI: 10.1111/jpy.13516

Alejandro Bernal-Ibáñez, Eva Cacabelos, Raul Triay-Portella, Patrício Ramalhosa, Ignacio Gestoso

{"title":"Assessing climatic conditions and biotic interactions shaping the success of Cystoseira foeniculacea early-life stages.","authors":"Alejandro Bernal-Ibáñez, Eva Cacabelos, Raul Triay-Portella, Patrício Ramalhosa, Ignacio Gestoso","doi":"10.1111/jpy.13516","DOIUrl":"https://doi.org/10.1111/jpy.13516","url":null,"abstract":"Early-life stages of canopy-forming macroalgae are critical for the maintenance of natural populations and the success of restoration actions. Unfortunately, the abiotic conditions and biotic interactions shaping the success of these stages have received less attention than the interactions shaping the success of adults. Here, we combined field and mesocosm experiments to explore the effects of temperature, herbivory, and canopy presence on the development of early-life stages of the brown seaweed Cystoseira foeniculacea. We assessed these effects by examining changes in recruit density and size. After recruiting zygotes under laboratory conditions, we conducted one laboratory and three field experiments. In the first field experiment, the density of recruits decreased over time in all rockpools and was negatively affected by rising temperatures and turf cover. Additionally, a marine heatwave (MHW; 11 days >25°C) was recorded in the donor pools, producing strong decay in the density of transplanted recruits and a significant reduction of the mature canopy. The second field experiment tested the survival of recruits based on their positioning within the canopy. We observed a higher density of recruits when placed at the edge or outside the canopy compared to recruits placed under the canopy. In the third field experiment, an herbivory-exclusion experiment, we show how density of recruits decreased in less than 48 h in noncaged treatments. In the laboratory, we conducted a thermotolerance experiment under controlled conditions, exposing the recruits to 19, 22, 25, 28, and 31°C for 7 weeks to assess thermal impacts on their survival and growth. Temperatures above the 25°C threshold reduced the density and size of the recruits. This study sheds light on the performance of the early-life stages of a Cystoseira spp. in Macaronesia, showing a low survival ratio against the current pressures even in the context of the potential refuge provided by the intertidal rockpools.","PeriodicalId":16831,"journal":{"name":"Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142502633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Growing older, growing more diverse: Sea turtles and epibiotic cyanobacteria. 年龄越大，种类越多：海龟和表生蓝藻。

IF 2.8 3区生物学

Journal of Phycology Pub Date : 2024-10-22 DOI: 10.1111/jpy.13511

Lucija Kanjer, Klara Filek, Maja Mucko, Mateja Zekan Lupić, Maša Frleta-Valić, Romana Gračan, Sunčica Bosak

{"title":"Growing older, growing more diverse: Sea turtles and epibiotic cyanobacteria.","authors":"Lucija Kanjer, Klara Filek, Maja Mucko, Mateja Zekan Lupić, Maša Frleta-Valić, Romana Gračan, Sunčica Bosak","doi":"10.1111/jpy.13511","DOIUrl":"10.1111/jpy.13511","url":null,"abstract":"Cyanobacteria are known for forming associations with various animals, including sea turtles, yet our understanding of cyanobacteria associated with sea turtles remains limited. This study aims to address this knowledge gap by investigating the diversity of cyanobacteria in biofilm samples from loggerhead sea turtle carapaces, utilizing a 16S rRNA gene amplicon sequencing approach. The predominant cyanobacterial order identified was Nodosilineales, with the genus Rhodoploca having the highest relative abundance. Our results suggest that cyanobacterial communities become more diverse as sea turtles age, as we observed a positive correlation between community diversity and the length of a sea turtle's carapace. Since larger and older turtles predominantly utilize neritic habitats, the shift to a more diverse cyanobacterial community aligned with a change in loggerhead habitat. Our research provides detailed insights into the cyanobacterial communities associated with loggerhead sea turtles, establishing a foundation for future studies delving into this fascinating ecological relationship and its potential implications for sea turtle conservation.","PeriodicalId":16831,"journal":{"name":"Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142468342","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A cry for kelp: Evidence for polyphenolic inhibition of Oxford Nanopore sequencing of brown algae. 为海带呐喊：多酚抑制牛津纳米孔褐藻测序的证据。

IF 2.8 3区生物学

Journal of Phycology Pub Date : 2024-10-22 DOI: 10.1111/jpy.13513

William S Pearman, Vanessa Arranz, Jose I Carvajal, Annabel Whibley, Yusmiati Liau, Katherine Johnson, Rachel Gray, Jackson M Treece, Neil J Gemmell, Libby Liggins, Ceridwen I Fraser, Evelyn L Jensen, Nicholas J Green

{"title":"A cry for kelp: Evidence for polyphenolic inhibition of Oxford Nanopore sequencing of brown algae.","authors":"William S Pearman, Vanessa Arranz, Jose I Carvajal, Annabel Whibley, Yusmiati Liau, Katherine Johnson, Rachel Gray, Jackson M Treece, Neil J Gemmell, Libby Liggins, Ceridwen I Fraser, Evelyn L Jensen, Nicholas J Green","doi":"10.1111/jpy.13513","DOIUrl":"https://doi.org/10.1111/jpy.13513","url":null,"abstract":"Genomic resources have yielded unprecedented insights into ecological and evolutionary processes, not to mention their importance in economic and conservation management of specific organisms. However, the field of macroalgal genomics is hampered by difficulties in the isolation of suitable DNA. Even when DNA that appears high quality by standard metrics has been isolated, such samples may not perform well during the sequencing process. We here have compared Oxford Nanopore long-read sequencing results for three species of macroalgae to those of nonmacroalgal species and determined that when using macroalgal samples, sequencing activity declined rapidly, resulting in reduced sequencing yield. Chemical analysis of macroalgal DNA that would be considered suitable for sequencing revealed that DNA derived from dried macroalgae was enriched for polyphenol-DNA adducts (DNA with large polyphenols chemically attached to it), which may have led to sequencing inhibition. Of note, we observed the strongest evidence of sequencing inhibition and reduced sequence output when using samples dried using silica gel-suggesting that such storage approaches may not be appropriate for samples destined for Oxford Nanopore sequencing. Our findings have wide-ranging implications for the generation of genomic resources from macroalgae and suggest a need to develop new storage methods that are more amenable to Oxford Nanopore sequencing or to use fresh flash-frozen tissue wherever possible for genome sequencing.","PeriodicalId":16831,"journal":{"name":"Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142468341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Algal highlight: What is in a name? Well… 藻类亮点：名字里有什么？Well....

IF 2.8 3区生物学

Journal of Phycology Pub Date : 2024-10-22 DOI: 10.1111/jpy.13506

Dale Casamatta

引用次数: 0

Population genetics of the freshwater red alga Batrachospermum gelatinosum (Rhodophyta) II: Phylogeographic analyses reveal spatial genetic structure among and within five major drainage basins in eastern North America. 淡水红藻 Batrachospermum gelatinosum（红藻纲）的种群遗传学 II：系统地理学分析揭示了北美东部五大流域之间和内部的空间遗传结构。

IF 2.8 3区生物学

Journal of Phycology Pub Date : 2024-10-21 DOI: 10.1111/jpy.13512

Roseanna M Crowell, Sarah J Shainker-Connelly, Stacy A Krueger-Hadfield, Morgan L Vis

{"title":"Population genetics of the freshwater red alga Batrachospermum gelatinosum (Rhodophyta) II: Phylogeographic analyses reveal spatial genetic structure among and within five major drainage basins in eastern North America.","authors":"Roseanna M Crowell, Sarah J Shainker-Connelly, Stacy A Krueger-Hadfield, Morgan L Vis","doi":"10.1111/jpy.13512","DOIUrl":"https://doi.org/10.1111/jpy.13512","url":null,"abstract":"The freshwater red alga Batrachospermum gelatinosum has a well-documented distribution spanning historically glaciated and unglaciated eastern North America. This alga has no known desiccation-resistant propagule; thus, long-distance dispersal events are likely rare. We predicted strong genetic structure among drainage basins and admixture among sites within basins. We predicted greater genetic diversity at lower latitude sites because they likely serve as refugia and the origin of northward, post-Pleistocene range expansion. We used 10 microsatellite loci to investigate genetic diversity from 311 gametophytes from 18 sites in five major drainage basins: South Atlantic Gulf, Mid-Atlantic, Ohio River, Great Lakes, and Northeast. Our data showed strong genetic partitioning among drainage basins and among sites within basins, yet no isolation by distance was detected. Genetic diversity varied widely among sites and was not strictly related to latitude as predicted. The results from B. gelatinosum provide strong support that each stream site contributes to the unique genetic variation within the species, potentially due to limited dispersal and the prevailing reproductive mode of intragametophytic selfing. Simulations of migration suggested post-Pleistocene dispersal from the Mid-Atlantic. Batrachospermum gelatinosum potentially persisted in refugia that were just south of the ice margins rather than in the southernmost part of its range. Research of other taxa with similar ranges could determine whether these results are generally applicable for freshwater red algae. Nevertheless, these results from B. gelatinosum add to the growing literature focused on the patterns and genetic consequences of post-Pleistocene range expansion by eastern North American biota.","PeriodicalId":16831,"journal":{"name":"Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142468344","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Unveiling interactions mediated by B vitamins between diatoms and their associated bacteria from cocultures. 从共培养物中揭示 B 族维生素介导的硅藻与其相关细菌之间的相互作用。

IF 2.8 3区生物学

Journal of Phycology Pub Date : 2024-10-16 DOI: 10.1111/jpy.13515

Cecilia Costas-Selas, Sandra Martínez-García, Jarone Pinhassi, Emilio Fernández, Eva Teira

{"title":"Unveiling interactions mediated by B vitamins between diatoms and their associated bacteria from cocultures.","authors":"Cecilia Costas-Selas, Sandra Martínez-García, Jarone Pinhassi, Emilio Fernández, Eva Teira","doi":"10.1111/jpy.13515","DOIUrl":"https://doi.org/10.1111/jpy.13515","url":null,"abstract":"Unveiling the interactions among phytoplankton and bacteria at the level of species requires axenic isolates to experimentally demonstrate their mutual effects. In this study, we describe the interactions among the diatoms Pseudo-nitzschia granii and Chaetoceros tenuissimus and their associated bacterial species, isolated from surface water of a coastal upwelling system using coculture experiments. Microalgae growth was assessed in axenic monocultures or in coculture with each of their co-isolated bacteria in the presence or absence of B vitamins. Pseudo-nitzschia granii growth was limited by B-vitamin supply, except when cultured with the bacteria Jannaschia cystaugens, which seemed to provide adequate levels of B vitamins to the diatom. Chaetoceros tenuissimus growth was reduced in the absence of B vitamins. Moreover, the growth of C. tenuissimus was stimulated by Alteromonas sp. and Celeribacter baekdonensis during the exponential growth. These results show a diversity of specific interactions between the diatoms and co-isolated bacteria, ranging from allelopathy to commensalism. Understanding how interactions between phytoplankton and bacteria modulate the structure and function of marine microbial plankton communities will contribute to a greater knowledge of plankton ecology and improve our ability to predict nutrient fluxes in marine ecosystems or the formation of blooms in a context of global change.","PeriodicalId":16831,"journal":{"name":"Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142468345","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Investigating the evolution of green algae with a large transcriptomic data set. 利用大型转录组数据集研究绿藻的进化。

IF 2.8 3区生物学

Journal of Phycology Pub Date : 2024-10-15 DOI: 10.1111/jpy.13509

David A Ferranti, Charles F Delwiche

{"title":"Investigating the evolution of green algae with a large transcriptomic data set.","authors":"David A Ferranti, Charles F Delwiche","doi":"10.1111/jpy.13509","DOIUrl":"https://doi.org/10.1111/jpy.13509","url":null,"abstract":"The colonization of land by plants approximately 450-500 million years ago (Mya) is one of the most important events in the history of life on Earth. Land plants, hereafter referred to as \"embryophytes,\" comprise the foundation of every terrestrial biome, making them an essential lineage for the origin and maintenance of biodiversity. The embryophytes form a monophyletic clade within one of the two major phyla of the green algae (Viridiplantae), the Streptophyta. Estimates from fossil data and molecular clock analyses suggest the Streptophyte algae (Charophytes) diverged from the other main phylum of green algae, the Chlorophyta, as much as 1500 Mya. Here we present a phylogenetic analysis using transcriptomic and genomic data of 62 green algae and embryophyte operational taxonomic units, 31 of which were assembled de novo for this project. We have focused on identifying the charophyte lineage that is sister to embryophytes, and show that the Zygnematophyceae have the strongest support, followed by the Charophyceae. Furthermore, we have examined amino acid and codon usage across the tree and determined these data broadly follow the phylogenetic tree. We concluded by searching the data set for protein domains and gene families known to be important in embryophytes. Many of these domains and genes have homologous sequences in the charophyte lineages, giving insight into the processes that underlay the colonization of the land by plants. This provides new insights into green algal diversification, identifies previously unknown attributes of genome evolution within the group, and shows how functional mechanisms have evolved over time.","PeriodicalId":16831,"journal":{"name":"Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.8,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142468343","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0