{"title":"Simulation of Ultra-Short Laser Pulses Propagation and Ionization in Dual-Gas-Cells to Enhance the Quasi-Phase Matching of Harmonics Generation in Plasmas","authors":"W. Adress","doi":"10.5614/j.math.fund.sci.2024.55.3.4","DOIUrl":"https://doi.org/10.5614/j.math.fund.sci.2024.55.3.4","url":null,"abstract":"A numerical model was designed and implemented to investigate the influence of plasma defocusing on laser characteristics. The effects of plasma defocusing were investigated by studying beam divergence, intensity reduction, and blue shifting. The diffusion of the ultra-intense laser beam in gas cells was within a Rayleigh range. Moreover, using dual-gas-cells, the impact of quasi-phase matching (QPM) on the creation of harmonic pulses in argon and hydrogen plasmas was studied. The alternating structure of argon and hydrogen gas cells showed a perfect build-up of the generated ultra-short harmonics pulses. The impact of electron density on laser diffusion and the creation of harmonic pulses were also investigated in this work. In the simulation, argon plasma with different plasma densities was used in an alternating structure to create dual-gas-cells and quasi-phase-matching. Noticeable conversion of the fundamental laser pulses to harmonics pulses was accomplished in the model by using the QPM concept.","PeriodicalId":16255,"journal":{"name":"Journal of Mathematical and Fundamental Sciences","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141656039","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dzaky Dian Ruhimat, F. Failamani, Bambang Prijamboedi
{"title":"Structural and Photoluminescence Properties of Ca2+-Substituted Self-Activated Photoluminescence Material of Na2TiSiO5","authors":"Dzaky Dian Ruhimat, F. Failamani, Bambang Prijamboedi","doi":"10.5614/j.math.fund.sci.2023.55.2.6","DOIUrl":"https://doi.org/10.5614/j.math.fund.sci.2023.55.2.6","url":null,"abstract":"The effects of Ca2+ substitution on the structural and optical properties of Na2TiSiO5 were studied. It was expected that the Ca2+ ions would replace Na+ ions and change the coordination of Ti4+-O2- as a luminescence center. Na2(1‑x)CaxTiSiO5 (x = 0.00, 0.50, 1.00) samples were synthesized using the solid-state method, and their structural properties, the local Ti4+-O2- coordination, the absorption spectra, and the photoluminescence properties were studied. The electronic structure of Na2(1-x)CaxTiSiO5 with x = 0.00 and 1.00 was also calculated using the Full Potential Linear Augmented Plane Wave (FP-LAPW) method to explain some of the observed properties. The Ca2+ substitution resulted in a phase transformation from an orthorhombic to a monoclinic structure. The number of TiO6 octahedra increased with the increase of Ca2+ and correlated with the decrease of PL emission intensity of the Na2(1‑x)CaxTiSiO5 samples. The Ti-3d bands in the CaTiSiO5 were more dispersive than in the Na2TiSiO5 and were responsible for the PL emission intensity reduction.","PeriodicalId":16255,"journal":{"name":"Journal of Mathematical and Fundamental Sciences","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141116450","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ronaldo Irzon, Kurnia Kurnia, Muhammad Firdaus, Eko Yulianto, Firdaus Djabar
{"title":"Geochemistry of I-type Volcanic Arc Granitoid From Tanggamus Regency, Southern Sumatra","authors":"Ronaldo Irzon, Kurnia Kurnia, Muhammad Firdaus, Eko Yulianto, Firdaus Djabar","doi":"10.5614/j.math.fund.sci.2023.55.2.5","DOIUrl":"https://doi.org/10.5614/j.math.fund.sci.2023.55.2.5","url":null,"abstract":"Granitoid intrusion of several provinces on Sumatra is correlated with Southeast Asia tectonics that have occurred since the Permian. Granites from several volcanic arc provinces are located along the western part of Sumatra Island and are found near Bukit Barisan. This study describes the geochemical character of granitoid from the Tanggamus region and its surroundings near the Bukit Barisan cluster. After megascopic description in the field, major oxides, trace elements, and rare earth elements in rock samples were measured using X-ray fluorescence and inductively coupled plasma-mass spectrometry devices. The samples were intermediate to acidic intrusive rocks with SiO2 ranging between 61.35% and 75.29%. The rocks can be described as diorite to granodiorite and were formed as a result of subduction processes. The granitic rock samples showed I-type features of A/CNK value <1.1, volcanic arc granite affinity, K2O/Na2O ratio, and magnesian properties. The total rare earth content was medium with an average of 43.97 ppm. The similarity of the rare earth normalized diagram against the chondrite value indicates that the samples come from an identical origin.","PeriodicalId":16255,"journal":{"name":"Journal of Mathematical and Fundamental Sciences","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140970996","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Bioinformatic Analysis Strategy in Restriction Enzyme Selection for Indonesian Panulirus homarus Identification by PCR-RFLP","authors":"Indriatmoko Indriatmoko, Adi Pancoro","doi":"10.5614/j.math.fund.sci.2023.55.2.4","DOIUrl":"https://doi.org/10.5614/j.math.fund.sci.2023.55.2.4","url":null,"abstract":"The spiny lobster (Panulirus homarus) is a valuable fishery commodity in Indonesia, particularly in its juvenile life form. However, identifying the early life forms of the spiny lobster can be challenging, as it exhibits similar morphological features compared to the juveniles of other Panilurid lobsters. Molecular-based identification, specifically DNA sequencing, is the best method for species identification, but it requires advanced instruments and is costly. An alternative method is proposed here, using the PCR-RFLP technique, which is low-cost, rapid, and has standard instrumentation requirements. The challenge with this method is selecting the appropriate restriction enzyme to determine the targeted species’ identity. This study proposes using the REfind (https://github.com/indriatmoko07/REfind), R package to select the best restriction enzyme for identifying P. homarus, applicable to other species. The bioinformatics workflow used in this study successfully identified BseSI or BmgI as the most suitable restriction enzymes among 739 restriction enzymes to differentiate P. homarus from other Panilurid species. This result was validated by employing a wet lab test using the BseSI enzyme and successfully validated the bioinformatics result. These findings may be useful for biologists in conducting various studies that require rapid, low-cost, and identification of specific species in the future.","PeriodicalId":16255,"journal":{"name":"Journal of Mathematical and Fundamental Sciences","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-03-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140236014","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
R. Fakhruddin, Nisa Nurul Ilmi, E. Sunardi, T. Ramli, Agus Ardianto Budiman, I. Nurdiana, Dzul Fadli
{"title":"Sedimentary Facies, Palynology, and Organic Geochemistry of Eocene Kalumpang Formation in Lariang and Karama Areas, West Sulawesi, Indonesia","authors":"R. Fakhruddin, Nisa Nurul Ilmi, E. Sunardi, T. Ramli, Agus Ardianto Budiman, I. Nurdiana, Dzul Fadli","doi":"10.5614/j.math.fund.sci.2023.55.2.3","DOIUrl":"https://doi.org/10.5614/j.math.fund.sci.2023.55.2.3","url":null,"abstract":"The Kalumpang Formation was deposited in a delta plain setting. A Middle to Late Eocene age (Proxapertites operculatus zone) was inferred from palynological analysis, with a paleoenvironment in a coastal plain setting with a strong terrestrial influence. Samples from the Kalumpang Formation indicate a marginal to early mature stage for hydrocarbon generation. It is mostly composed of gas-prone to oil and gas-prone Type III kerogen facies. The biomarker character of both the rock and oil samples suggests a terrestrial origin, with a significant contribution of estuarine or bay organic material. The oil derives from a non-carbonate lithology, while the rock samples are from carbonate/calcareous shale origin. The abundance of oleanane compound and C30 resins suggests higher plant angiosperm input of Late Cretaceous or younger age for both the rock and the oil samples. The oil seep contains more abundant oleananes compared to the carbonaceous mudstone of the Kalumpang Formation. This suggests that the oil originated from more marine facies than the rock samples, which were deposited in a delta plain setting. This study demonstrated the agreement of depositional environment interpretation and age assessment between lithofacies, palynological, and organic geochemistry analysis.","PeriodicalId":16255,"journal":{"name":"Journal of Mathematical and Fundamental Sciences","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139526269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Optical Spectroscopy and Photoionization Model of Planetary Nebula NGC 6572","authors":"Muhammad Fajrin, H. L. Malasan, E. I. Akbar","doi":"10.5614/j.math.fund.sci.2023.55.2.2","DOIUrl":"https://doi.org/10.5614/j.math.fund.sci.2023.55.2.2","url":null,"abstract":"We investigated NGC 6572 through optical spectroscopy to determine its kinematical and chemical properties. Two intermediate dispersion spectra (R~5000) centered around Hα and Hβ were used to derive the nebular expansion velocity from emission lines associated with Hα, Hβ, [OIII], [NII], and [SII] ions. A low dispersion spectrum (R~1000) was used to determine the nebular electron temperature, density, and chemical composition. We performed photoionization modeling to construct a self-consistent nebular model, whileintermediate-resolution spectral images showed the global elliptical structure of the nebula. The expansion velocity deduced from most of the emission lines is consistent with the typical expansion velocity of planetary nebulae, i.e., around 15-20 kms-1. The nebular physical properties align well with those determined by other studies. The nebular abundances were found to be lower than the solar abundances (except for oxygen) but still comparable with the abundances derived by other researchers. The photoionization model generated spectral lines that are consistent with the lines found in the observations. Further spectroscopic observations with higher resolution and wider range at various position angles will be very useful to reveal a more complete and detailed structure of the nebula and to improve the determination of the nebular physical properties.","PeriodicalId":16255,"journal":{"name":"Journal of Mathematical and Fundamental Sciences","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139533928","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
B. Legowo, Anti Fatkhul Qoiriah, Artono Dwijo Sutomo, S. Putra, Wiwit Suryanto, Budi Purnama
{"title":"Magnetic Characterization of Fine Sediment in the Solo Basin Indonesia","authors":"B. Legowo, Anti Fatkhul Qoiriah, Artono Dwijo Sutomo, S. Putra, Wiwit Suryanto, Budi Purnama","doi":"10.5614/j.math.fund.sci.2023.55.2.1","DOIUrl":"https://doi.org/10.5614/j.math.fund.sci.2023.55.2.1","url":null,"abstract":"The magnetic characteristics of fine sediment samples from the Solo Basin are reported in this paper. Magnetic fine sediment was identified by magnetic susceptibility mapping based on sampling of 182 points. Then, a depth analysis (on 7 selected sampling points) was performed using X-ray fluorescence spectrometry, which showed an iron oxide content of up to 55.42%, while X-ray diffractometry confirmed magnetite minerals with crystallite size ≤100 nm. Further, the vibrating sample magnetometry results verified the magnetic characteristics under a single-domain configuration. The characteristic magnetic susceptibility map showed that there is a lithogenic effect on sediment in the Solo Basin. In addition, anthropogenic activities seem to play a pivotal role in distributing magnetic materials.","PeriodicalId":16255,"journal":{"name":"Journal of Mathematical and Fundamental Sciences","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139136194","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Wahyu Widowati, D. Priyandoko, H. Kusuma, R. Rizal
{"title":"The Potency of Camellia Sinensis L. to Reduce Proinflammatory Cytokine Levels in the Acute Respiratory Distress Syndrome Rat Model","authors":"Wahyu Widowati, D. Priyandoko, H. Kusuma, R. Rizal","doi":"10.5614/j.math.fund.sci.2023.55.1.6","DOIUrl":"https://doi.org/10.5614/j.math.fund.sci.2023.55.1.6","url":null,"abstract":"This study was conducted in order to ascertain how green tea extract (GTE) could affect inflammatory markers, including level of interleukin-(IL)-12, IL-18 of serum and lung, tumor necrosis factor (TNF)-α, gene expression of NLR family-pyrin-domain containing 3 (NLRP3) of lung, nuclear factor kappa B (NF-κB), lung histopathology, and IL-6 expression of lung tissue in lipopolysaccharide (LPS)-treated rats as ARDS animal model. Rats were given GTE at dosages of 0, 50, 400, 800 mg/kg of body weight for 28 days to boost their immune systems. The rats were then stimulated with LPS (5 g/kg of BW) and after that continued to receive GTE for 28 days. Levels of serum or lung IL-18, IL-12, TNF-α, were measured using the ELISA method; expression of lung NF-κB and NLRP3 was measured by qRT-PCR; immunohistochemistry (IHC) was implemented to assess lung IL-6 expression; and lung histopathology was evaluated through the bleeding, inflammation, and alveolus scores. GTE had the ability to lower serum IL-18, lung TNF-α, and lung IL-12 levels; suppress the lung gene expression of NF-κB, NLRP-3, IL-6 expression; and improve lung histopathology. Green tea extract inhibited inflammation in the ARDS rat model by decreasing the proinflammatory cytokine level and proinflammatory gene expression.","PeriodicalId":16255,"journal":{"name":"Journal of Mathematical and Fundamental Sciences","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2023-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138945803","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Computational Study of Nocardiotide-A Analogues in the Development of Technetium-99m Radiopeptides for Cancer Imaging for Targeting Somatostatin Receptor 2","authors":"Rizky Juwita Sugiharti, Rani Maharani, Rahmana Emran Kartasasmita, Daryono Hadi Tjahjono","doi":"10.5614/j.math.fund.sci.2023.55.1.5","DOIUrl":"https://doi.org/10.5614/j.math.fund.sci.2023.55.1.5","url":null,"abstract":"Nocardiotide-A (cWIWLVA) is a cyclic peptide with significant cytotoxicity against several cancer cells. The present research aimed to design a radiopeptide based on nocardiotide-A analogues to be labeled by technetium-99m targeting SSTR2, which is the most widely expressed receptor in several types of human cancers and used as radiopeptide target. Nocardiotide-A analogues were individually designed by replacing valine at the lead compound with lysine, arginine, histidine, asparagine, and glutamine, and this was simulated by molecular dynamics using AMBER18. A molecular docking using AutoDock 4.2 was performed and evaluated to understand the effect of chelation of technetium-99m on 99mTc-HYNIC-EDDA and 99mTc-HYNIC-tricine on the binding affinity of nocardiotide-A analogues. The molecular dynamics simulation confirmed that the designed nocardiotide-A-based peptides were stable in the binding pocket of SSTR2 for 200 ns. Moreover, the nocardiotide-A-based radiopeptides are able to interact with residues Q102, D122, Q126, and N276 by building hydrogen bonds, which are essential binding residues in SSTR2. The molecular docking simulation revealed that the best docking parameter is exhibited by 99mTc/EDDA/HYNIC-cWIWLNA and 99mTc/tricine/HYNIC-cWIWLNA with a binding free energy of –12.59 kcal/mol and –8.96 kcal/mol, respectively. Taken together, nocardiotide-A-based radiopeptides are prospective to be further developed for cancer imaging targeting SSTR2.","PeriodicalId":16255,"journal":{"name":"Journal of Mathematical and Fundamental Sciences","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135254595","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Modelling the Impact of Decomposed Disease-Induced Dead Cashew Plants on Fusarium Wilt Dynamics in South-Eastern Tanzania","authors":"Fatu Chilinga, Alfred K. Hugo","doi":"10.5614/j.math.fund.sci.2023.55.1.3","DOIUrl":"https://doi.org/10.5614/j.math.fund.sci.2023.55.1.3","url":null,"abstract":"Cashew Fusarium wilt disease transmitted by Fusarium oxysporum is dangerous and destroys many cashew plants in Tanzania. The effect of this disease leads households and the government to experience a decrease in overall cashew production and income due to this disease’s capacity to harm cashew plants. This study aimed to ascertain the role of Fusarium wilt-decayed disease-induced dead plants in spreading the disease among cashew plants. A mathematical model was created based on the dynamics of the disease and a stability analysis was conducted using theories of ordinary differential equations. Data from two regions in Tanzania, Lindi, and Mtwara, were used in model fitting and parameter estimation. Additionally, the parameters were estimated using maximum likelihood estimation (MLE). The outcome suggests that the disease’s prevalence and spread increase during an outbreak as decomposed diseased-induced dead plants contribute to the saturation of chlamydospores in the soil.","PeriodicalId":16255,"journal":{"name":"Journal of Mathematical and Fundamental Sciences","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135548688","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}