A. Fish, A. Vachani, P. Massion, S. Antic, N. Trivedi, J. K. Brown, T. Rubenstein, A. D. Rostykus, M. Beggs, Hongfeng Yu, L. Carbonell, M. Arjomandi
{"title":"Novel Multiplexed Plasma Biomarkers and Clinical Factors Augment Risk Assessment for Indeterminate Pulmonary Nodules in Former Smokers","authors":"A. Fish, A. Vachani, P. Massion, S. Antic, N. Trivedi, J. K. Brown, T. Rubenstein, A. D. Rostykus, M. Beggs, Hongfeng Yu, L. Carbonell, M. Arjomandi","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a7452","DOIUrl":"https://doi.org/10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a7452","url":null,"abstract":"METHODS: Plasma protein assays for the MagArray immunoassay platform were developed for biomarkers likely to provide discrimination between benign and malignant pulmonary nodules found on CT scan in former smokers. Retrospective plasma samples from a cohort of 217 subjects at high risk of lung cancer, collected at three medical centers across the US, were randomly assigned to a training set (n=73) and a testing set (n=144) for generalized linear modeling. The minimum set of protein biomarkers and clinical factors that provided the highest accuracy in classifying benign and malignant subjects were identified. Model performance was further evaluated by its ability to assign the correct risk classification for subjects with an intermediate risk nodule based on the Mayo Pre-Test Probability of Malignancy Model. RESULTS: A biomarker and clinical factor model consisting of TIMP1, ProSB, EGFR, CEA, and NAP2 protein biomarker levels, along with subject age, sex, nodule size, and nodule spiculated appearance provided an accuracy of 73% in the 144 testing subjects with a sensitivity of 76% and a specificity of 82%. The ROC curve AUC was 0.86 compared to the Mayo model AUC of 0.79 (Figure 1A). Within the 93 test subjects falling into the Mayo model intermediate risk range (0.05 to 0.65), the algorithm showed a ROC curve AUC of 0.82 compared to the Mayo model AUC of 0.64 (Figure 1B). Of those 93 subjects falling within the intermediate risk range, the algorithm correctly classified 70 of 93 samples (75%) as either benign or malignant.","PeriodicalId":158441,"journal":{"name":"C110. THE FUTURE OF LUNG CANCER BIOMARKERS: WHERE SHOULD WE LOOK?","volume":"26 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123438849","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sho Sakamoto, Kazuhiro Sato, Y. Okuda, Y. Izumiya, Naho Kumagai, Kazuhisa Sudo, Mariko Asano, M. Takeda, M. Sano, K. Nakayama
{"title":"Effect of the ABCG2 C421A Polymorphism on Plasma Concentration of Gefitinib","authors":"Sho Sakamoto, Kazuhiro Sato, Y. Okuda, Y. Izumiya, Naho Kumagai, Kazuhisa Sudo, Mariko Asano, M. Takeda, M. Sano, K. Nakayama","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5821","DOIUrl":"https://doi.org/10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5821","url":null,"abstract":"","PeriodicalId":158441,"journal":{"name":"C110. THE FUTURE OF LUNG CANCER BIOMARKERS: WHERE SHOULD WE LOOK?","volume":"18 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124579056","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
F. Abou El-Kasem, M. Rahouma, Iman Loay, O. Badawi, Mohamed S. Kamel, Dina A. Ibrahim, G. Ghaly, M. Amin, A. Abdelrahman
{"title":"TOP2A and HER2neu Evaluation in Malignant Pleural Mesothelioma","authors":"F. Abou El-Kasem, M. Rahouma, Iman Loay, O. Badawi, Mohamed S. Kamel, Dina A. Ibrahim, G. Ghaly, M. Amin, A. Abdelrahman","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5824","DOIUrl":"https://doi.org/10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5824","url":null,"abstract":"","PeriodicalId":158441,"journal":{"name":"C110. THE FUTURE OF LUNG CANCER BIOMARKERS: WHERE SHOULD WE LOOK?","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130947417","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Umekawa, K. Almodovar, S. Tonthat, S. Lee, M. Lee, S. Khanolkar, D. Upadhyay
{"title":"Plasma CK-19 Expressions Can Differentiate High Risk COPD from Lung Cancer","authors":"S. Umekawa, K. Almodovar, S. Tonthat, S. Lee, M. Lee, S. Khanolkar, D. Upadhyay","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5818","DOIUrl":"https://doi.org/10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5818","url":null,"abstract":"","PeriodicalId":158441,"journal":{"name":"C110. THE FUTURE OF LUNG CANCER BIOMARKERS: WHERE SHOULD WE LOOK?","volume":"114 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125488463","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Density of PD-1 Positive T-Cells from Resected Tumor Specimens Analyzed by Multiplex Immunohistochemistry Can Predict Recurrence in Lung Adenocarcinoma","authors":"T. Atwater, P. Massion","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5828","DOIUrl":"https://doi.org/10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5828","url":null,"abstract":"","PeriodicalId":158441,"journal":{"name":"C110. THE FUTURE OF LUNG CANCER BIOMARKERS: WHERE SHOULD WE LOOK?","volume":"14 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121871849","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Prevalence and Significance of APOBEC-Mediated RNA Editing in Lung Cancer Tumors","authors":"Frank Zhang, S. Yendamuri, S. Patnaik","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5811","DOIUrl":"https://doi.org/10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5811","url":null,"abstract":"","PeriodicalId":158441,"journal":{"name":"C110. THE FUTURE OF LUNG CANCER BIOMARKERS: WHERE SHOULD WE LOOK?","volume":"101 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133043590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Reliability of PD-L1 Assays Using Small Tissue Samples Compared with Surgical Specimens","authors":"M.K. Lee, J. Eom","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5814","DOIUrl":"https://doi.org/10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5814","url":null,"abstract":"","PeriodicalId":158441,"journal":{"name":"C110. THE FUTURE OF LUNG CANCER BIOMARKERS: WHERE SHOULD WE LOOK?","volume":"43 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128677471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Ghadermarzi, P. Chandrika, S. Cowles, J. Denis, M. Bowling
{"title":"The Utility of Liquid Based Biopsy Using Next Generation Sequencing Technology at the Time of Tissue Collection by Bronchoscopy for Suspected Lung Cancer","authors":"S. Ghadermarzi, P. Chandrika, S. Cowles, J. Denis, M. Bowling","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5810","DOIUrl":"https://doi.org/10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5810","url":null,"abstract":"","PeriodicalId":158441,"journal":{"name":"C110. THE FUTURE OF LUNG CANCER BIOMARKERS: WHERE SHOULD WE LOOK?","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121977934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Spivack, M. Shi, D. Patel, A. Desai, J. Dobkin, C. Shah, D. Hosgood, K. Ye, Y. Qiu, I. Kurland
{"title":"Exhaled Small, Polar, Energetics-Related Metabolites by GC-MS for Lung Cancer Risk Assessment","authors":"S. Spivack, M. Shi, D. Patel, A. Desai, J. Dobkin, C. Shah, D. Hosgood, K. Ye, Y. Qiu, I. Kurland","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5816","DOIUrl":"https://doi.org/10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5816","url":null,"abstract":"","PeriodicalId":158441,"journal":{"name":"C110. THE FUTURE OF LUNG CANCER BIOMARKERS: WHERE SHOULD WE LOOK?","volume":"4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122207662","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The Impact of a Bronchial Genomic Classifier in Patients Evaluated for Peripheral Pulmonary Nodules with Electromagnetic Navigational Bronchoscopy","authors":"S. Awadallah, H. Sarwar, M. Bowling","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5825","DOIUrl":"https://doi.org/10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a5825","url":null,"abstract":"","PeriodicalId":158441,"journal":{"name":"C110. THE FUTURE OF LUNG CANCER BIOMARKERS: WHERE SHOULD WE LOOK?","volume":"43 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133095739","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}