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Structure–function relationships between the human bitter taste receptor TAS2R38 and propylthiouracil: An in-silico investigation 人类苦味受体TAS2R38与丙基硫脲嘧啶之间的结构-功能关系:一项计算机研究
IF 3.7 3区 生物学
IUBMB Life Pub Date : 2025-02-19 DOI: 10.1002/iub.70008
Gowtham Subramanian, Vinithra Ponnusamy, Janaranjani Murugesan, Hemamalini Vedagiri, Prabha Panneerselvan, Keerthana Vasanthakumar, Vasanth Krishnan, Selvakumar Subramaniam
{"title":"Structure–function relationships between the human bitter taste receptor TAS2R38 and propylthiouracil: An in-silico investigation","authors":"Gowtham Subramanian,&nbsp;Vinithra Ponnusamy,&nbsp;Janaranjani Murugesan,&nbsp;Hemamalini Vedagiri,&nbsp;Prabha Panneerselvan,&nbsp;Keerthana Vasanthakumar,&nbsp;Vasanth Krishnan,&nbsp;Selvakumar Subramaniam","doi":"10.1002/iub.70008","DOIUrl":"https://doi.org/10.1002/iub.70008","url":null,"abstract":"<p>Taster categorisation uses bitter thiourea compounds like propylthiouracil (PROP) and phenylthiocarbamide (PTC), which are frequently associated with amino acid alterations at positions 49, 262 and 296 in human taste 2 receptor member 38 (hTAS2R38). Since the hTAS2R38 protein lacked a crystallographic structure, it was modelled using contact-guided iterative threading assembly refinement, its residues were mutated and refined, and the binding pocket area and volume were assessed using CASTp. Bitter thiourea molecules were docked using the ligand extra precision module and the receptor–ligand complex was manually positioned in a fully hydrated, equilibrated 1-palmitoyl-2-oleoylphosphatidylcholine bilayer using the CHARMM GUI membrane constructor, a 100 ns simulation was carried out using the Desmond program. Analysis revealed that the PROP binds to the allosteric hydrophobic pocket of hTAS2R38 and forms a hydrogen bond with ASN190. The native structure (hTAS2R38<sub>PAV</sub>) has a higher glide energy (−24.164 kcal/mol) and docking score (−7.212 kcal/mol) than mutants, corroborating our taste preference study. In contrast, PTC lacks hydrogen bonds in the binding pocket but exhibits pi–pi stacking interactions with the native structure. Structures with mutations at the 49th or 296th position showed the largest root mean square deviations and fluctuations. A triple mutation increases surface area and volume, making the 262nd position critical to the binding pocket. These results highlight the functional roles of these three residues in hTAS2R38.</p>","PeriodicalId":14728,"journal":{"name":"IUBMB Life","volume":"77 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-02-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143446801","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction to “Caffeic acid phenethyl ester synergistically enhances docetaxel and paclitaxel cytotoxicity in prostate cancer cells” 更正“咖啡酸苯乙酯协同增强多西紫杉醇和紫杉醇对前列腺癌细胞的细胞毒性”
IF 3.7 3区 生物学
IUBMB Life Pub Date : 2025-02-18 DOI: 10.1002/iub.70005
{"title":"Correction to “Caffeic acid phenethyl ester synergistically enhances docetaxel and paclitaxel cytotoxicity in prostate cancer cells”","authors":"","doi":"10.1002/iub.70005","DOIUrl":"https://doi.org/10.1002/iub.70005","url":null,"abstract":"<p>\u0000 <span>M. F. Tolba</span>, <span>A. Esmat</span>, <span>A. M. Al-Abd</span>, <span>S. S. Azab</span>, <span>A. E. Khalifa</span>, <span>H. A. Mosli</span>, <span>S. Z. Abdel-Rahman</span>, and <span>A. B. Abdel-Naim</span>, “ <span>Caffeic acid phenethyl Ester synergistically enhances docetaxel and paclitaxel cytotoxicity in prostate cancer cells</span>,” <i>IUBMB Life</i> <span>65</span>, no. <span>8</span> (<span>2013</span>): <span>716</span>–<span>729</span>, https://doi.org/10.1002/iub.1188.</p><p>Concerns were raised by a third party regarding duplication of image panels within the article (Figures 3 and 8). An investigation by the journal team confirmed these issues and discovered another instance of duplication between Figure 4A and B GAPDH panels.</p><p>The authors admitted to the image compilation errors in Figures 3 and 8. Regarding Figure 4, they stated that the samples and their controls were obtained from the same PCR/gel electrophoresis run. The authors cooperated with the investigation, however, the partial raw data provided were not sufficient to fully address the concerns; therefore, they repeated the experiments in question to provide further clarification.</p><p>The new data confirmed the same trends as observed before, therefore, the experimental results and the corresponding conclusions of the paper remain unaffected.</p><p>The corrected Figures 3, 4, and 8 and their corrected captions are as follows:</p>","PeriodicalId":14728,"journal":{"name":"IUBMB Life","volume":"77 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/iub.70005","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143439104","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic landscaping of receptor tyrosine kinase ALK with highly frequent rearrangements in cancers 受体酪氨酸激酶ALK的基因组景观与癌症中高度频繁的重排
IF 3.7 3区 生物学
IUBMB Life Pub Date : 2025-02-07 DOI: 10.1002/iub.70003
Wei Ye, Wen-Bin Ou
{"title":"Genomic landscaping of receptor tyrosine kinase ALK with highly frequent rearrangements in cancers","authors":"Wei Ye,&nbsp;Wen-Bin Ou","doi":"10.1002/iub.70003","DOIUrl":"https://doi.org/10.1002/iub.70003","url":null,"abstract":"<p>Anaplastic lymphoma kinase (ALK) fusion tyrosine kinases (TKs) are commonly found in various cancers and are considered as promising targets for therapy due to their intricate biological processes. However, the reasons for the higher frequency of ALKs fusion compared to other TKs are not well elucidated. Physicochemical properties, secondary and tertiary structures, and phylogenetic trees, along with protein sequence alignments of receptor tyrosine kinases (RTKs) and ALK fused partner genes, were examined using the resources provided by the National Center for Biotechnology Information (NCBI) and the Catalogue of Somatic Mutations in Cancer (COSMIC). Sequence alignments were performed to identify common sequences between partner genes and search for common breakpoints within the COSMIC database. ALK is a large, unstable, acidic protein with similarly conservation among RTKs. ALK fusion partners are mostly acidic, unstable proteins, mostly consisting of α-helices and random coil. However, <i>EML4</i> and <i>NPM1</i> are the most frequently occurring partner genes and have their own unique structural characteristics. By functional domain analysis, we found that the functions of the first half of the <i>ALK</i> partner gene (the part fused to ALK) are mostly focused on signaling. ALK is identified as a large hydrophilic protein,exhibits a higher proportion of random coils. Compared to other RTKs, ALK has fewer structural domains (PTKC_ALK_LTK domain). Pairwise comparison with fusion partner genes revealed a conserved sequence predicted to have structural stability and act as a common binding site for nucleases. Exon 20 of <i>ALK</i> is a fusion frequent site according to COSMIC database analysis. The structural instability of ALK and partner genes, coupled with the inherent variability of breakpoint sequences, leads to the formation of potent kinase-activated oncogenes, which play a critical role in tumorigenesis. While the occurrence of <i>ALK</i> fusions with partner genes is random, specific combinations lead to the generation of oncogenes.</p>","PeriodicalId":14728,"journal":{"name":"IUBMB Life","volume":"77 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143362733","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Possible new mechanisms of primary drug resistance in NSCLC with EGFR mutation treated with Osimertinib 奥西替尼治疗EGFR突变NSCLC原发性耐药的可能新机制。
IF 3.7 3区 生物学
IUBMB Life Pub Date : 2025-02-05 DOI: 10.1002/iub.70002
Lujing Shao, Tong Li, Xinyan Jia, Xinyu Zhang, Qi Li, Chunyan Dong
{"title":"Possible new mechanisms of primary drug resistance in NSCLC with EGFR mutation treated with Osimertinib","authors":"Lujing Shao,&nbsp;Tong Li,&nbsp;Xinyan Jia,&nbsp;Xinyu Zhang,&nbsp;Qi Li,&nbsp;Chunyan Dong","doi":"10.1002/iub.70002","DOIUrl":"10.1002/iub.70002","url":null,"abstract":"<p>In this study, a patient with lung adenocarcinoma harboring an EGFR mutation exhibited primary resistance to the targeted EGFR inhibitor Osimertinib after 2 months of treatment. As the disease advanced, further genetic analysis revealed the emergence of additional mutations in ARID1A, NTRK1, and ZRSR2, alongside the existing EGFR mutation. Subsequent treatment with Pemetrexed resulted in a significant reduction in liver metastases. Protein mass spectrometry sequencing and immunohistochemical analysis collectively indicated that the PI3K/mTOR pathway mediates the mechanism through which these gene mutations confer primary drug resistance. Evidence demonstrates that the co-occurrence of EGFR and ARID1A mutations diminishes the efficacy of EGFR tyrosine kinase inhibitors (EGFR TKIs). Consequently, it is hypothesized that mutations in NTRK1 and ZRSR2, which are implicated in the PI3K/mTOR pathway, contribute to the primary resistance observed with Osimertinib treatment. In this case, the illness was effectively managed through prompt adjustments to the treatment regimen and the rapid administration of chemotherapy drugs. This finding also constitutes the first evidence that mutations in NTRK1 and ZRSR2 are pivotal in the development of primary resistance to Osimertinib. Consequently, it is imperative to conduct genetic testing at the earliest opportunity and modify the treatment plan accordingly.</p>","PeriodicalId":14728,"journal":{"name":"IUBMB Life","volume":"77 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/iub.70002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143189491","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Zinc finger protein 169 promotes tumor progress of hepatocellular cancer via up-regulating cyclin-dependent kinase 19 锌指蛋白169通过上调细胞周期蛋白依赖性激酶19促进肝癌的肿瘤进展。
IF 3.7 3区 生物学
IUBMB Life Pub Date : 2025-01-27 DOI: 10.1002/iub.2943
Chaoquan Hu, Aizier Ainiwaer, Ying Lu, Jiaxing Li, Yongmei Fu, Jun Luo, Baijun Wu, Peng Yin, Xiao Hu, Yao Sun, Hong Li, He Lu, Zheng Dong
{"title":"Zinc finger protein 169 promotes tumor progress of hepatocellular cancer via up-regulating cyclin-dependent kinase 19","authors":"Chaoquan Hu,&nbsp;Aizier Ainiwaer,&nbsp;Ying Lu,&nbsp;Jiaxing Li,&nbsp;Yongmei Fu,&nbsp;Jun Luo,&nbsp;Baijun Wu,&nbsp;Peng Yin,&nbsp;Xiao Hu,&nbsp;Yao Sun,&nbsp;Hong Li,&nbsp;He Lu,&nbsp;Zheng Dong","doi":"10.1002/iub.2943","DOIUrl":"10.1002/iub.2943","url":null,"abstract":"<p>Hepatocellular carcinoma (HCC) ranks among the most prevalent types of cancer globally. Zinc finger protein 169 (ZNF169) holds significant importance as a transcription factor, yet its precise function in HCC remains to be elucidated. This study aims to examine the clinical importance, biological functions, and molecular pathways associated with ZNF169 in the development of HCC. The study employed lentiviral transduction for ZNF169 overexpression and the use of small interfering RNAs (siRNAs) to suppress its expression. ZNF169 was upregulated in HCC tissues and cell lines. Additionally, HCC patients exhibiting elevated ZNF169 levels experienced reduced overall survival, shorter disease-free survival, and diminished progression-free survival. Silencing of ZNF169 inhibited cell proliferation, migration, and cell cycle progression. Whereas ectopic expression of ZNF169 promoted HCC progression in vivo and ex vivo. Subsequently, Pearson analysis results showed that cyclin-dependent kinase 19 (CDK19) was positively correlated with ZNF169 levels in HCC using TCGA dataset. Luciferase assay findings indicated a potential interaction between ZNF169 and CDK19 promoter. Additionally, our data showed that CDK19 expression levels were elevated in HCC tissues, and patients with higher CDK19 expression faced a poorer prognosis. Furthermore, recovery experiments demonstrated that CDK19 could reverse the impact of ZNF169 on HCC cell amplification. Our findings indicate that ZNF169 promotes HCC progression by upregulating CDK19, highlighting its role as a therapeutic target or prognostic biomarker for HCC.</p>","PeriodicalId":14728,"journal":{"name":"IUBMB Life","volume":"77 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143046958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deciphering the senescence-based tumoral heterogeneity and characteristics in pancreatic cancer: Results from parallel bulk and single-cell transcriptome data 解读胰腺癌中基于衰老的肿瘤异质性和特征:来自平行体和单细胞转录组数据的结果。
IF 3.7 3区 生物学
IUBMB Life Pub Date : 2025-01-26 DOI: 10.1002/iub.70001
Yeting Lu, Shuo Han, Jing Hu, Kaiji Lv, Yi Ruan, Gong Cheng, Jing Zhang, Xiang Wu, Zeming Weng, Xinhua Zhou
{"title":"Deciphering the senescence-based tumoral heterogeneity and characteristics in pancreatic cancer: Results from parallel bulk and single-cell transcriptome data","authors":"Yeting Lu,&nbsp;Shuo Han,&nbsp;Jing Hu,&nbsp;Kaiji Lv,&nbsp;Yi Ruan,&nbsp;Gong Cheng,&nbsp;Jing Zhang,&nbsp;Xiang Wu,&nbsp;Zeming Weng,&nbsp;Xinhua Zhou","doi":"10.1002/iub.70001","DOIUrl":"10.1002/iub.70001","url":null,"abstract":"<p>The prevalent intra- and intertumoral heterogeneity results in undesirable prognosis and therapy failure of pancreatic cancer, potentially resulting from cellular senescence. Herein, integrated analysis of bulk and single-cell RNA-seq profiling was conducted to characterize senescence-based heterogeneity in pancreatic cancer. Publicly available bulk and single-cell RNA sequencing from pancreatic cancer patients were gathered from TCGA-PAAD, PACA-AU, PACA-CA, and GSE154778 datasets. The activity of three senescence-related pathways (cell cycle, DNA repair, and inflammation) was scored utilizing ssGSEA algorithm. A series of functional verifications of crucial genes were accomplished in patient tissue and pancreatic cancer cells. Based upon them, unsupervised clustering analysis was executed to classify pancreatic cancer samples into distinct senescence-based clusters at the bulk and single-cell levels. For single-cell transcriptome profiling, cell clustering and annotation were implemented, and malignant cells were recognized utilizing infercnv algorithm. Two senescence-based clusters were established and highly reproducible at the bulk level, with the heterogeneity in prognosis, clinicopathological features, genomic CNVs, oncogenic pathway activity, immune microenvironment and immune checkpoints. Senescence-relevant gene CHGA, UBE2C and MCM10 were proved to correlate with the migration and prognosis of pancreatic cancer. At the single-cell level, seven cell types were annotated, comprising ductal cells 1, ductal cells 2, fibroblasts, macrophages, T cells, stellate cells, and endothelial cells. The senescence-based classification was also proven at the single-cell level. Ductal cells were classified as malignant cells and non-malignant cells. In the tumor microenvironment of malignant cells, hypoxia and angiogenesis affected senescent phenotype. The heterogeneity in senescence was also observed between and within cell types. Altogether, our findings unveil that cellular senescence contributes to intra- and intertumoral heterogeneity in pancreatic cancer, which might facilitate the development of therapeutics and precision therapy in pancreatic cancer.</p>","PeriodicalId":14728,"journal":{"name":"IUBMB Life","volume":"77 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-01-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143046957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CDKN3 as a key regulator of G2M phase in triple-negative breast cancer: Insights from multi-transcriptomic analysis CDKN3作为三阴性乳腺癌G2M期的关键调节因子:来自多转录组学分析的见解
IF 3.7 3区 生物学
IUBMB Life Pub Date : 2025-01-26 DOI: 10.1002/iub.2922
Haodi Ma, Yirui Dong, Jiayu Zheng, Shunshun Zhang, Siya Tang, Junxiang Wang, Zhifeng Qu, Xiucheng Li, Li Zeng, Kena Song, Chunyan Liu, Linlin Shi, Qinan Yin, Xuewei Zheng
{"title":"CDKN3 as a key regulator of G2M phase in triple-negative breast cancer: Insights from multi-transcriptomic analysis","authors":"Haodi Ma,&nbsp;Yirui Dong,&nbsp;Jiayu Zheng,&nbsp;Shunshun Zhang,&nbsp;Siya Tang,&nbsp;Junxiang Wang,&nbsp;Zhifeng Qu,&nbsp;Xiucheng Li,&nbsp;Li Zeng,&nbsp;Kena Song,&nbsp;Chunyan Liu,&nbsp;Linlin Shi,&nbsp;Qinan Yin,&nbsp;Xuewei Zheng","doi":"10.1002/iub.2922","DOIUrl":"10.1002/iub.2922","url":null,"abstract":"<p>Triple-negative breast cancer (TNBC) remains a significant global health challenge, emphasizing the need for precise identification of patients with specific therapeutic targets and those at high risk of metastasis. This study aimed to identify novel therapeutic targets for personalized treatment of TNBC patients by elucidating their roles in cell cycle regulation. Using weighted gene co-expression network analysis (WGCNA), we identified 83 hub genes by integrating gene expression profiles with clinical pathological grades. A machine learning-based integrative approach further pinpointed 12 prognostic genes, among which CDKN3 exhibited the highest hazard ratio and the most adverse impact on overall survival (OS) in BC patients. Additionally, CDKN3 was identified as an independent prognostic factor for OS prediction. CDKN3 overexpression was confirmed in BC patients and validated at both mRNA and protein levels in BC cells. Knockdown of CDKN3 significantly inhibited the migration and proliferation of BC cells. Cell cycle pathway analysis revealed significant enrichment in G2M-associated pathways in BC patients, with multi-transcriptomic data indicating a close association between enhanced G2M cell cycle activity and CDKN3 upregulation in basal cancer subtypes. Pseudotime analysis further suggested CDKN3 upregulation during the G2M phase at the terminal trajectory of basal cancer subtypes, implying that CDKN3 may drive BC cell progression by promoting G2M cell cycle activity. Mechanistically, CDKN3 knockdown induced G2M cell cycle arrest in TNBC cells by downregulating CCNB2. In conclusion, CDKN3 knockdown effectively inhibits TNBC by arresting the G2M cell cycle, underscoring CDKN3 as a promising therapeutic target in TNBC treatment.</p>","PeriodicalId":14728,"journal":{"name":"IUBMB Life","volume":"77 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-01-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143059082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The up-regulation of RIPK3 mediated by ac4C modification promotes oxidative stress-induced granulosa cell senescence by inhibiting the Nrf2/HO-1 pathway ac4C修饰介导的RIPK3上调通过抑制Nrf2/HO-1通路促进氧化应激诱导的颗粒细胞衰老。
IF 3.7 3区 生物学
IUBMB Life Pub Date : 2025-01-25 DOI: 10.1002/iub.2944
Wanjun Zhang, Jiahao Zhang, Yile Zhang, Jun Zhai, Bo Sun, Yihong Guo, Fang Wang
{"title":"The up-regulation of RIPK3 mediated by ac4C modification promotes oxidative stress-induced granulosa cell senescence by inhibiting the Nrf2/HO-1 pathway","authors":"Wanjun Zhang,&nbsp;Jiahao Zhang,&nbsp;Yile Zhang,&nbsp;Jun Zhai,&nbsp;Bo Sun,&nbsp;Yihong Guo,&nbsp;Fang Wang","doi":"10.1002/iub.2944","DOIUrl":"10.1002/iub.2944","url":null,"abstract":"<p>Abnormality of granulosa cells (GCs) is the critical cause of follicular atresia in premature ovarian failure (POF). RIPK3 is highly expressed in GCs derived from atretic follicles. We focus on uncovering how RIPK3 contributes to ovarian GC senescence. Primary GCs were treated with H₂O₂ to induce senescence. ROS was detected via DCFH-DA staining. Levels of senescence-related molecules and SA-β-Gal activity were examined. Cyclophosphamide was administered to mice to induce POF. The impact of RIPK3 on atretic follicles and sex hormones was evaluated through HE staining and ELISA, respectively. The acRIP-qPCR analysis of RIPK3 ac4C levels, RIP detection for interaction between RIPK3 and NAT10, and actinomycin D treatment to detect RIPK3 degradation were conducted. In H<sub>2</sub>O<sub>2</sub>-treated GCs and POF mouse ovaries, levels of RIPK3, ROS, senescence-related molecules, as well as SA-β-Gal activity, were all up-regulated, and this effect was suppressed by RIPK3 inhibition. RIPK3 interference reduced atretic follicles and FSH levels while increasing AMH and E2 levels. Nrf2 and HO-1 content were diminished in the models, whereas si-RIPK3 facilitated their expression. The effect of si-RIPK3 on decreased levels of ROS and senescence-related molecules was reversed by ML385. H<sub>2</sub>O<sub>2</sub> decreased RIPK3 mRNA degradation and increased its ac4C modification. The ac4C modifying enzyme NAT10 was up-regulated in the models, and NAT10 enhanced RIPK3 mRNA stability through ac4C modification. NAT10 knockdown mitigated ovarian GC senescence by inhibiting RIPK3 expression. The promotion of RIPK3 mRNA stability through ac4C modification by NAT10, in turn, affects the Nrf2/HO-1 pathway and promotes ovarian GC senescence.</p>","PeriodicalId":14728,"journal":{"name":"IUBMB Life","volume":"77 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-01-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143059083","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRYAB is upregulated and predicts clinical prognosis in kidney renal clear cell carcinoma CRYAB在肾透明细胞癌中表达上调并预测临床预后。
IF 3.7 3区 生物学
IUBMB Life Pub Date : 2025-01-24 DOI: 10.1002/iub.2938
Hao Ren, Xinyu Chen, Meiling Ji, Wengang Song, Lili Cao, Xiaohong Guo
{"title":"CRYAB is upregulated and predicts clinical prognosis in kidney renal clear cell carcinoma","authors":"Hao Ren,&nbsp;Xinyu Chen,&nbsp;Meiling Ji,&nbsp;Wengang Song,&nbsp;Lili Cao,&nbsp;Xiaohong Guo","doi":"10.1002/iub.2938","DOIUrl":"10.1002/iub.2938","url":null,"abstract":"<p>Clear cell renal cell carcinoma (KIRC) is the most prevalent subtype of renal cell carcinoma (RCC), accounting for 70% to 80% of all RCC cases. The CRYAB (αB-crystallin) gene is broadly expressed across various human tissues, yet its role in KIRC progression remains unclear. This study aims to elucidate the function of CRYAB in KIRC progression and to assess its potential as a biomarker for early diagnosis, therapeutic targeting, and prognosis. In our report, we found that CRYAB was dramatically upregulated in KIRC, and its expression was associated with TNM stage, pathological stage, and age. Also, patients with higher CRYAB expression exhibited poor survival and prognosis. CRYAB overexpression led to enhanced tumor cell proliferation. Vice versa, CRYAB downregulation resulted in decreased cell proliferation in vitro. Mechanistically, Gene set enrichment analysis plots showed the enrichment of cell survival. Consistently, these effects were associated with increased AKT signaling and BCL-2 expression. Furthermore, we also observed that CRYAB expression levels were negatively correlated with immunocyte infiltration. In conclusion, these findings suggested that CRYAB could be regarded as a latent biomarker for early diagnosis, therapeutic targeting, and prognosis.</p>","PeriodicalId":14728,"journal":{"name":"IUBMB Life","volume":"77 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143033031","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
APOC1 inhibit NKTCL doxorubicin sensitivity by promoting mitophagy APOC1通过促进线粒体自噬抑制NKTCL对阿霉素的敏感性。
IF 3.7 3区 生物学
IUBMB Life Pub Date : 2025-01-16 DOI: 10.1002/iub.2942
Sa Xiao, Jing Kuang, Jiamei yang, Haili Wang, Yuanyuan sun, Haipeng Zhang, Zhongyu Zhang, Mengyuan Shi, Kai Qi, Miao Jiang, Yanyan Zhang, Qingjiang Chen, Xudong Zhang
{"title":"APOC1 inhibit NKTCL doxorubicin sensitivity by promoting mitophagy","authors":"Sa Xiao,&nbsp;Jing Kuang,&nbsp;Jiamei yang,&nbsp;Haili Wang,&nbsp;Yuanyuan sun,&nbsp;Haipeng Zhang,&nbsp;Zhongyu Zhang,&nbsp;Mengyuan Shi,&nbsp;Kai Qi,&nbsp;Miao Jiang,&nbsp;Yanyan Zhang,&nbsp;Qingjiang Chen,&nbsp;Xudong Zhang","doi":"10.1002/iub.2942","DOIUrl":"10.1002/iub.2942","url":null,"abstract":"<p>NKTCL is a highly aggressive malignant tumor, especially prevalent in the southern regions of China. Although chemotherapy regimens based on ADM have achieved certain therapeutic effects in early treatment, the issue of ADM resistance severely limits the therapeutic efficacy and makes it difficult to improve patient survival rates. Our research results indicate that the expression level of APOC1 is closely related to the sensitivity of NKTCL cells to ADM. The upregulation of APOC1 may promote mitophagy, clear damaged mitochondria, stabilize the intracellular environment, and enhance the tolerance of tumor cells to ADM. Furthermore, APOC1 may further affect the formation of mitophagy and drug resistance by activating specific signaling pathways, such as the STAT3 signaling pathway. Animal experiments further confirm the conclusions of in vitro experiments, showing that APOC1 regulates mitophagy through p-STAT3<sup>Tyr705</sup>, thereby promoting the drug resistance of NKTCL. These findings provide a new perspective for the development of novel therapeutic strategies targeting APOC1 and its associated signaling pathways, which may help overcome the issue of ADM resistance in NKTCL.</p>","PeriodicalId":14728,"journal":{"name":"IUBMB Life","volume":"77 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143005508","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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