Genes & DiseasesPub Date : 2025-05-29DOI: 10.1016/j.gendis.2025.101702
Yaheng Wu , Guo An , Jia Tong , Wenlong Zhang , Zhihua Tian , Bin Dong , Xijuan Liu , Lin Zhao , Chunxiang Ye , Jingtao Liu , Wei Zhao , Huachong Ma
{"title":"Galectin-3 in tumor-stromal cells enhances gemcitabine resistance in pancreatic adenocarcinoma by suppressing oxidative phosphorylation","authors":"Yaheng Wu , Guo An , Jia Tong , Wenlong Zhang , Zhihua Tian , Bin Dong , Xijuan Liu , Lin Zhao , Chunxiang Ye , Jingtao Liu , Wei Zhao , Huachong Ma","doi":"10.1016/j.gendis.2025.101702","DOIUrl":"10.1016/j.gendis.2025.101702","url":null,"abstract":"<div><div>Galectin-3 (Gal-3) plays a multifaceted role in the development and progression of pancreatic adenocarcinoma (PAAD), which is associated with a poor prognosis. Its interaction with tumor microenvironment cells has been reported. However, the Gal-3-mediated tumor–stromal interaction and induced energy metabolism associated with drug resistance remain unknown. Our previous study has reported that Gal-3 secretion from tumor cells and inflammatory cytokine dependency are therapeutic targets. In this study, we revealed that the expression of Gal-3 was not only remarkably up-regulated in tumors but also significantly associated with the tumor-associated fibroblasts of PAAD patients. A coculture model of PAAD cells and pancreatic stellate cells revealed that Gal-3 mediated the Ca<sup>2+</sup>/−calcineurin–NFAT pathway to increase the transcription of CCL2 and BSG in tumor-associated fibroblasts. These findings ultimately lead to the observation of low energy metabolism in tumor cells. Particularly, mitochondrial oxidative phosphorylation was functionally arrested in Gal-3-high tumor cells, as demonstrated by a lower oxygen consumption rate and mitochondrial ATP production through abnormal mitochondrial morphology. The inhibition of the CCL2-CCR2 and PPIA-BSG pathways indicated the restoration of gemcitabine sensitivity when drug resistance was elicited by Gal-3. Oral administration of the natural Gal-3 inhibitor modified citrus pectin extract (MCP) showed therapeutic effect for Gal-3-activated tumors and stromal cells in orthotopic pancreatic xenograft models. Hence, our findings offer insights into the fact that low mitochondrial metabolism is dependent on Gal-3 activation-mediated gemcitabine resistance through tumor–stromal interactions.</div></div>","PeriodicalId":12689,"journal":{"name":"Genes & Diseases","volume":"12 5","pages":"Article 101702"},"PeriodicalIF":6.9,"publicationDate":"2025-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144297400","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Genes & DiseasesPub Date : 2025-05-08DOI: 10.1016/j.gendis.2025.101681
Xiaobin Mai , Le Wang , Juan Tu , Jialin Li , Jun Li , Yaping Zhan , Pei Tang , Ying Wang , Yan Wang , Lingyun Zheng , Qianqian Zhang , Jiangchao Li , Xiong Li , Lijing Wang , Jia Zhou , Cuiling Qi
{"title":"A novel oridonin analogue, CYD0682, suppresses breast cancer growth, angiogenesis, and metastasis by inhibiting the ANGPTL4/MAPK signaling axis","authors":"Xiaobin Mai , Le Wang , Juan Tu , Jialin Li , Jun Li , Yaping Zhan , Pei Tang , Ying Wang , Yan Wang , Lingyun Zheng , Qianqian Zhang , Jiangchao Li , Xiong Li , Lijing Wang , Jia Zhou , Cuiling Qi","doi":"10.1016/j.gendis.2025.101681","DOIUrl":"10.1016/j.gendis.2025.101681","url":null,"abstract":"","PeriodicalId":12689,"journal":{"name":"Genes & Diseases","volume":"12 5","pages":"Article 101681"},"PeriodicalIF":6.9,"publicationDate":"2025-05-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144190101","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Ribonucleases in Mendelian disease: Characterization and insight from model organisms","authors":"Annasha Dutta , Anastasiia Zaremba , Paulina Jackowiak","doi":"10.1016/j.gendis.2025.101613","DOIUrl":"10.1016/j.gendis.2025.101613","url":null,"abstract":"<div><div>Ribonucleases (RNases), essential for RNA metabolism, are implicated in human diseases, including neurodevelopmental, developmental, hematopoietic and other dysfunctions through mutations that disrupt their enzymatic functions. Exploring RNase mutations across organisms offers insights into Mendelian diseases, facilitating molecular dissection of pathological pathways and therapeutic development. By employing model organisms, our analysis underscores the evolutionary conservation of RNase genes, facilitating deeper insights into disease mechanisms. These models are vital for uncovering rare molecular dysfunctions and potential therapeutic targets, demonstrating the effectiveness of integrated research approaches in addressing complex genetic disorders. Drawing from phylogenetic analyses, literature survey, and databases documenting the effects of human disease-causing mutations, the review highlights the significance and advantages of employing model organisms to study specific Mendelian disorders.</div></div>","PeriodicalId":12689,"journal":{"name":"Genes & Diseases","volume":"12 5","pages":"Article 101613"},"PeriodicalIF":6.9,"publicationDate":"2025-03-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144288777","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Genes & DiseasesPub Date : 2025-03-19DOI: 10.1016/j.gendis.2025.101608
Qinglin Wang , Zehao Pan , Si Liang , Yuanjian Shi , Gaochao Dong , Lin Xu , Qixing Mao , Feng Jiang
{"title":"Transfer RNA-derived small RNAs (tsRNAs): A rising star in liquid biopsy","authors":"Qinglin Wang , Zehao Pan , Si Liang , Yuanjian Shi , Gaochao Dong , Lin Xu , Qixing Mao , Feng Jiang","doi":"10.1016/j.gendis.2025.101608","DOIUrl":"10.1016/j.gendis.2025.101608","url":null,"abstract":"<div><div>Liquid biopsy has emerged as a valuable clinical tool due to its non-invasive nature and real-time molecular profiling capabilities. Transfer RNA-derived small RNAs (tsRNAs) are a group of small non-coding RNAs generated from mature tRNAs or tRNA precursors. Recently, increasing studies have reported tsRNAs' potential to serve as promising biomarkers in various diseases, especially cancers. Notably, tsRNAs can be detected in various kinds of body fluids, such as seminal fluid plasma, blood plasma, saliva, and urine, and have been demonstrated to exist stably in body fluids. In this mini-review, we will summarize the recent discoveries on the role of tsRNAs in body fluids as biomarkers, hoping to provide new insights for disease diagnosis and therapeutic strategies.</div></div>","PeriodicalId":12689,"journal":{"name":"Genes & Diseases","volume":"12 5","pages":"Article 101608"},"PeriodicalIF":6.9,"publicationDate":"2025-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144271407","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Genes & DiseasesPub Date : 2025-03-19DOI: 10.1016/j.gendis.2025.101606
Amin Ullah , Rajeev K. Singla , Dan Cao , Boyang Chen , Bairong Shen
{"title":"Age-related and postmenopausal breast cancer progression and treatment management: The significance of pro-inflammatory cytokines and CXC chemokines","authors":"Amin Ullah , Rajeev K. Singla , Dan Cao , Boyang Chen , Bairong Shen","doi":"10.1016/j.gendis.2025.101606","DOIUrl":"10.1016/j.gendis.2025.101606","url":null,"abstract":"<div><div>Older age is one of the leading risk indicators for advanced breast cancer. It is critical to extensively investigate how aging affects breast cancer, considering the increasing rate of population aging. Human body aging and death are caused by cellular senescence and alterations in the aging microenvironment <em>in vivo</em>. Breast cancer cells may invade more easily with age due to the stiff extracellular matrix of the breast. Furthermore, growing evidence suggests that the massive release of inflammatory immune mediators, such as cytokines (interleukins) or CXC chemokines (CXCs), and their receptors (CXCRs), including interleukin (IL)-6, IL-8/CXCL8, tumor necrosis factor (TNF), interferon (INF), transforming growth factor (TGF), CXCL1, CXCL9, CXCL10, CXCL11/CXCR3, and CXCL12/CXCR4, plays a critical role in the development of breast cancer in elderly patients. Researchers are particularly interested in obesity-induced inflammation because it has been shown to raise the risk of breast cancer in postmenopausal women with higher body mass index. Obesity-triggered inflammation causes increased infiltration of proinflammatory cytokines, adipokines, immune cells, and tumor cells in the enlarged adipose tissue of postmenopausal women with breast cancer, thereby modulating the tumor's immune-mediated microenvironment. Therefore, in this review, we focus on the functional significance studies of proinflammatory cytokines, CXCs, and CXCRs and describe their roles in influencing breast cancer progression in older women and their factors, such as obesity in postmenopausal women. In addition, the current status and prospects of cytokine- and CXC-based theranostic interventions for breast cancer therapy in elderly and postmenopausal women are discussed.</div></div>","PeriodicalId":12689,"journal":{"name":"Genes & Diseases","volume":"12 5","pages":"Article 101606"},"PeriodicalIF":6.9,"publicationDate":"2025-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144279920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Genes & DiseasesPub Date : 2025-03-18DOI: 10.1016/j.gendis.2025.101605
Wenjun Quan , Kizito Eneye Bello , Rafidah Hanim Shueb , Nazri Mustaffa
{"title":"Circular RNAs in hepatitis B virus-induced hepatocellular carcinoma: A comprehensive review and recent advances","authors":"Wenjun Quan , Kizito Eneye Bello , Rafidah Hanim Shueb , Nazri Mustaffa","doi":"10.1016/j.gendis.2025.101605","DOIUrl":"10.1016/j.gendis.2025.101605","url":null,"abstract":"<div><div>Circular RNAs (circRNAs) are a class of stable and versatile non-coding RNAs that are pivotal in the occurrence and development of some diseases, particularly tumors. Hepatitis B virus (HBV)-induced hepatocellular carcinoma (HCC) is a liver disease with substantial global impact. Despite efforts towards adequate management, the survival of patients with HBV-induced HCC has been consistently low. circRNAs regulate various physiological activities of HBV-induced HCC. This review aims to elucidate the biogenesis of circRNAs and the pathophysiology of HBV-induced HCC and comprehensively analyze the applications of circRNAs in oncology and therapeutics. In addition, this review summarizes past research achievements on circRNAs in HBV-induced HCC. Finally, the limitations of existing methodologies and circRNA research in HBV-induced HCC have been discussed to provide a blueprint for future investigations.</div></div>","PeriodicalId":12689,"journal":{"name":"Genes & Diseases","volume":"12 5","pages":"Article 101605"},"PeriodicalIF":6.9,"publicationDate":"2025-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144271409","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Genes & DiseasesPub Date : 2025-03-18DOI: 10.1016/j.gendis.2025.101603
Haozhe Yuan , Mengping Jiang , Xingyu Xu , Jialiang Zhu , Shulong Dong , Weida Meng , Dandan Zhang , Jiakang Ma , Yicheng Lin , Ziqiang Chen , Shaoyang Sun , Wenqing Qiu , Yun Liu
{"title":"Haplotype-resolved assemblies of the MHC region in five widely used tumor cell lines","authors":"Haozhe Yuan , Mengping Jiang , Xingyu Xu , Jialiang Zhu , Shulong Dong , Weida Meng , Dandan Zhang , Jiakang Ma , Yicheng Lin , Ziqiang Chen , Shaoyang Sun , Wenqing Qiu , Yun Liu","doi":"10.1016/j.gendis.2025.101603","DOIUrl":"10.1016/j.gendis.2025.101603","url":null,"abstract":"<div><div>The major histocompatibility complex (MHC) region plays a crucial role in immune function and is implicated in various diseases and cancer immunoediting. However, its high polymorphism poses challenges for accurate genetic profiling using conventional reference genomes. Here, we present high-quality, haplotype-resolved assemblies of the MHC region in five widely used tumor cell lines: A549, HeLa, HepG2, K562, and U2OS. Numerous oncological studies extensively employ these cell lines, ranging from basic molecular research to drug discovery and personalized medicine approaches. By integrating CRISPR-based targeted enrichment with 10 × Genomics linked-read and PacBio HiFi long-read sequencing, we constructed MHC haplotypes for each cell line, providing a valuable resource for the research community. Using these assembled haplotypes as references, we characterize the aneuploidy of the MHC region in these cell lines, offering insights into the genetic landscape of this critical immunological locus. Our work addresses the urgent need for accurate MHC profiling in these widely used cell line models, enabling more precise interpretation of existing and future genomic and epigenomic data. This resource is expected to significantly enhance our understanding of tumor biology, immune responses, and the development of targeted therapies.</div></div>","PeriodicalId":12689,"journal":{"name":"Genes & Diseases","volume":"12 5","pages":"Article 101603"},"PeriodicalIF":6.9,"publicationDate":"2025-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144297399","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Genes & DiseasesPub Date : 2025-03-06DOI: 10.1016/j.gendis.2025.101590
Yehree Kim , Yoojin Chung , Ju Ang Kim , Kyu Hee Han , Kwon Woo Kang , Ngoc-Trinh Tran , Min Young Kim , Eunyoung Yi , Sangyong Jung , Bong Jik Kim , Quynh-Anh Artinian , Seth D. Koehler , Ning Pan , Tyler M. Gibson , Lars Becker , Joseph W. Goodliffe , Molly Kalker , Madeline Barnes , Luke A. Shaheen , Meghan C. Drummond , Byung Yoon Choi
{"title":"Otof gene transfer in DFNB9 mice carrying human founder non-truncating alleles","authors":"Yehree Kim , Yoojin Chung , Ju Ang Kim , Kyu Hee Han , Kwon Woo Kang , Ngoc-Trinh Tran , Min Young Kim , Eunyoung Yi , Sangyong Jung , Bong Jik Kim , Quynh-Anh Artinian , Seth D. Koehler , Ning Pan , Tyler M. Gibson , Lars Becker , Joseph W. Goodliffe , Molly Kalker , Madeline Barnes , Luke A. Shaheen , Meghan C. Drummond , Byung Yoon Choi","doi":"10.1016/j.gendis.2025.101590","DOIUrl":"10.1016/j.gendis.2025.101590","url":null,"abstract":"","PeriodicalId":12689,"journal":{"name":"Genes & Diseases","volume":"12 5","pages":"Article 101590"},"PeriodicalIF":6.9,"publicationDate":"2025-03-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143941796","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}