Fungal Diversity最新文献

{"title":"Trends in yeast diversity discovery","authors":"Teun Boekhout, Anthony S. Amend, Fouad El Baidouri, Toni Gabaldón, József Geml, Moritz Mittelbach, Vincent Robert, Chen Shuhui Tan, Benedetta Turchetti, Duong Vu, Qi-Ming Wang, Andrey Yurkov","doi":"10.1007/s13225-021-00494-6","DOIUrl":"https://doi.org/10.1007/s13225-021-00494-6","url":null,"abstract":"<p>Yeasts, usually defined as unicellular fungi, occur in various fungal lineages. Hence, they are not a taxonomic unit, but rather represent a fungal lifestyle shared by several unrelated lineages. Although the discovery of new yeast species occurs at an increasing speed, at the current rate it will likely take hundreds of years, if ever, before they will all be documented. Many parts of the earth, including many threatened habitats, remain unsampled for yeasts and many others are only superficially studied. Cold habitats, such as glaciers, are home to a specific community of cold-adapted yeasts, and, hence, there is some urgency to study such environments at locations where they might disappear soon due to anthropogenic climate change. The same is true for yeast communities in various natural forests that are impacted by deforestation and forest conversion. Many countries of the so-called Global South have not been sampled for yeasts, despite their economic promise. However, extensive research activity in Asia, especially China, has yielded many taxonomic novelties. Comparative genomics studies have demonstrated the presence of yeast species with a hybrid origin, many of them isolated from clinical or industrial environments. DNA-metabarcoding studies have demonstrated the prevalence, and in some cases dominance, of yeast species in soils and marine waters worldwide, including some surprising distributions, such as the unexpected and likely common presence of <i>Malassezia</i> yeasts in marine habitats.</p>","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":null,"pages":null},"PeriodicalIF":20.3,"publicationDate":"2021-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138530795","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Taxonomic studies of some often over-looked Diaporthomycetidae and Sordariomycetidae","authors":"Huang, Shi-Ke, Hyde, Kevin D., Mapook, Ausana, Maharachchikumbura, Sajeewa S. N., Bhat, Jayarama D., McKenzie, Eric H. C., Jeewon, Rajesh, Wen, Ting-Chi","doi":"10.1007/s13225-021-00488-4","DOIUrl":"https://doi.org/10.1007/s13225-021-00488-4","url":null,"abstract":"<p>Sordariomycetes is an earlier-introduced and one of the widely distributed class of Ascomycota. The class was initially classified based on morphology in having inoperculate and unitunicate asci. With the development of DNA based phylogenetic analysis, several undetermined or polyphyletic members of Sordariomycetes were reclassified. However, not all species belonging to this class have been sequenced and analyzed. There are a number of species, especially those old and poorly studied ones which have never been sequenced before and not even recollected again for further taxonomic verification. One of the main objective in this study is to revise and update the taxonomy of several well-known early and poorly studied species whose classification are still obscure. Herein, we re-examined the type materials and/or authentic specimens together to explore 74 relatively poorly-studied genera, which mainly belong to Boliniales, Calosphaeriales, Chaetosphaeriales, Jobellisiales, and Sordariales classified under Diaporthomycetidae and Sordariomycetidae. We provide descriptions, notes, figures and/or drawings and discussed their phylogenetic relationships. As a result, the monotypic Jobellisiales is transferred from Hypocreomycetidae to Diaporthomycetidae. Based on phylogenetic analysis, the polyphyletic Lasiosphaeriaceae is divided into five families, Bombardiaceae (<i>Apodospora</i>, <i>Bombardia</i>, <i>Bombardioidea</i>, <i>Fimetariella</i> and <i>Ramophialophora</i>), Lasiosphaeriaceae (<i>Anopodium</i>, <i>Bellojisia</i>, <i>Corylomyces</i>, <i>Lasiosphaeria</i>, <i>Mammaria</i> and <i>Zopfiella</i>), Lasiosphaeridaceae (<i>Lasiosphaeris</i>), Strattoniaceae (<i>Strattonia</i>) and Zygospermellaceae (<i>Episternus</i> and <i>Zygospermella</i>). In addition, a new family Neoschizotheciaceae is established based on <i>Neoschizothecium</i>. Analysis of the type species of <i>Boothiella</i>, <i>Stellatospora</i>, <i>Sulcatistroma</i> and <i>Tengiomyces</i> placed them in Sordariaceae, Chaetomiaceae, Hypocreales and Coronophorales, respectively. We classify the genera lacking molecular data based on their morphology and expect them to be recollected; that is, <i>Kacosphaeria</i> in Calosphaeriales; <i>Arnium</i>, <i>Biconiosporella</i>, <i>Camptosphaeria</i>, <i>Diffractella</i>, <i>Emblemospora</i>, <i>Eosphaeria</i>, <i>Periamphispora</i>, <i>Synaptospora</i> and <i>Tripterosporella</i> in Sordariales; <i>Conidiotheca</i> in Sordariomycetes; <i>Copromyces</i>, <i>Effetia</i>, <i>Endophragmiella</i> and <i>Tulipispora</i> are accommodated in Ascomycota. Besides, we establish a new genus <i>Neoschizothecium</i> based on phylogenetic analysis. New combinations proposed: <i>Camaropella amorpha</i>, <i>Cam</i>. <i>microspora</i>, <i>Cam</i>. <i>plana</i>, <i>Cladorrhinum grandiusculum</i>, <i>Cla</i>. <i>leucotrichum</i>, <i>Cla</i>. <i>terricola</i>, <i>Cla</i>. <i>olerum</i>, <i>Helminthosphaeria plumbea</i>, <i>Immersiella hirta</i>, <i>Jugulospora mino","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":null,"pages":null},"PeriodicalIF":20.3,"publicationDate":"2021-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138530873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Phylogenetic and ecological reevaluation of the order Onygenales","authors":"Hazal Kandemir, K. Dukik, Marcus de Melo Teixeira, J. B. Stielow, Fatima Zohra Delma, A. Al‐Hatmi, Sarah A. Ahmed, M. Ilkit, G. D. de Hoog","doi":"10.21203/rs.3.rs-1049506/v1","DOIUrl":"https://doi.org/10.21203/rs.3.rs-1049506/v1","url":null,"abstract":"The order Onygenales is classified in the class Eurotiomycetes of the subphylum Pezizomycotina. Families in this order have classically been isolated from soil and dung, and two lineages contain causative agents of superficial, cutaneous and systemic infections in mammals. The ecology and habitat choices of the species are driven mainly by the keratin and cellulose degradation abilities. The present study aimed to investigate whether the ecological trends of the members of Onygenales can be interpreted in an evolutionary sense, linking phylogenetic parameters with habitat preferences, to achieve polyphasic definitions of the main taxonomic groups. Evolutionary processes were estimated by multiple gene genealogies and divergence time analysis. Previously described families, namely, Arthrodermataceae, Ajellomycetaceae, Ascosphaeraceae, Eremascaceae, Gymnoascaceae, Onygenaceae and Spiromastigoidaceae, were accepted in Onygenales, and two new families, Malbrancheaceae and Neogymnomycetaceae, were introduced. A number of species could not be assigned to any of the defined families. Our study provides a revised overview of the main lines of taxonomy of Onygenales, supported by multilocus analyses of ITS, LSU, TUB, TEF1, TEF3, RPB1, RPB2, and ribosomal protein 60S L10 (L1) (RP60S) sequences, combined with available data on ecology, physiology, morphology, and genomics.","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":null,"pages":null},"PeriodicalIF":20.3,"publicationDate":"2021-11-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44294228","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Species diversity, taxonomy and multi-gene phylogeny of phlebioid clade (Phanerochaetaceae, Irpicaceae, Meruliaceae) of Polyporales","authors":"Che-Chih Chen, Chi-Yu Chen, Sheng-Hua Wu","doi":"10.1007/s13225-021-00490-w","DOIUrl":"https://doi.org/10.1007/s13225-021-00490-w","url":null,"abstract":"","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":null,"pages":null},"PeriodicalIF":20.3,"publicationDate":"2021-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41768030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Global Soil Mycobiome consortium dataset for boosting fungal diversity research","authors":"L. Tedersoo, V. Mikryukov, S. Anslan, M. Bahram, A. Khalid, A. Corrales, A. Agan, Aída M. Vasco-Palacios, A. Saitta, A. Antonelli, A. Rinaldi, A. Verbeken, B. P. Sulistyo, Boris Tamgnoue, B. Furneaux, C. Ritter, C. Nyamukondiwa, C. Sharp, C. Marín, D. Dai, Daniyal Gohar, Dipon Sharmah, E. M. Biersma, E. Cameron, E. De Crop, Eveli Otsing, E. Davydov, F. Albornoz, F. Brearley, F. Buegger, G. Gates, Geoffrey L. Zahn, G. Bonito, Indrek Hiiesalu, Inga Hiiesalu, Irma Zettur, I. Barrio, J. Pärn, J. Heilmann‐Clausen, Jelena Ankuda, John Y. Kupagme, Joosep Sarapuu, J. Maciá‐Vicente, J. D. Fovo, J. Geml, J. Alatalo, Julieta Alvarez-Manjarrez, J. Monkai, K. Põldmaa, Kadri Runnel, K. Adamson, K. Bråthen, K. Pritsch, Kassim I. Tchan, K. Armolaitis, K. Hyde, K. Newsham, K. Panksep, L. A. Adebola, L. J. Lamit, M. Saba, M. E. da Silva Cáceres, M. Tuomi, M. Gryzenhout, M. Bauters, Miklós Bálint, N. Wijayawardene, Niloufar Hagh-Doust, N. S. Yorou, O. Kurina, P. Mortimer, P. Meidl, R. H. Nilsson, Rasmus Puusepp, R. Casique-","doi":"10.1007/s13225-021-00493-7","DOIUrl":"https://doi.org/10.1007/s13225-021-00493-7","url":null,"abstract":"","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":null,"pages":null},"PeriodicalIF":20.3,"publicationDate":"2021-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41705034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Taxonomy, phylogeny, molecular dating and ancestral state reconstruction of Xylariomycetidae (Sordariomycetes)","authors":"Milan C. Samarakoon, K. Hyde, S. Maharachchikumbura, M. Stadler, E. Gareth Jones, I. Promputtha, N. Suwannarach, E. Camporesi, T. Bulgakov, Jiankui Liu","doi":"10.1007/s13225-021-00495-5","DOIUrl":"https://doi.org/10.1007/s13225-021-00495-5","url":null,"abstract":"","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":null,"pages":null},"PeriodicalIF":20.3,"publicationDate":"2021-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49408915","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Colletotrichum species and complexes: geographic distribution, host range and conservation status","authors":"P. Talhinhas, R. Baroncelli","doi":"10.1007/s13225-021-00491-9","DOIUrl":"https://doi.org/10.1007/s13225-021-00491-9","url":null,"abstract":"","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":null,"pages":null},"PeriodicalIF":20.3,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44510173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Biphasic taxonomic approaches for generic relatedness and phylogenetic relationships of Teichosporaceae","authors":"D. S. Tennakoon, R. Jeewon, Kasun M. Thambugala, E. Gentekaki, D. Wanasinghe, I. Promputtha, K. Hyde","doi":"10.1007/s13225-021-00492-8","DOIUrl":"https://doi.org/10.1007/s13225-021-00492-8","url":null,"abstract":"","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":null,"pages":null},"PeriodicalIF":20.3,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42589236","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Contribution to rust flora in China I, tremendous diversity from natural reserves and parks","authors":"P. Zhao, Zhi‐Feng Zhang, D. Hu, K. Tsui, X. Qi, Dorji Phurbu, Yusufjon Gafforov, L. Cai","doi":"10.1007/s13225-021-00482-w","DOIUrl":"https://doi.org/10.1007/s13225-021-00482-w","url":null,"abstract":"","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":null,"pages":null},"PeriodicalIF":20.3,"publicationDate":"2021-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44145272","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Global diversity and systematics of Hymenochaetaceae with poroid hymenophore","authors":"F. Wu, Li-Wei Zhou, J. Vlasák, Yu-Cheng Dai","doi":"10.21203/rs.3.rs-719853/v1","DOIUrl":"https://doi.org/10.21203/rs.3.rs-719853/v1","url":null,"abstract":"Taxonomy and phylogeny of poroid Hymenochaetaceae based on the most comprehensive phylogenetic analyses are presented. A phylogeny based on a combined dataset of ITS and nLSU sequences for accepted genera of Hymenochaetaceae was analyzed and two or multigene phylogenies for most species of ten large genera including Coltricia, Fomitiporella, Fomitiporia, Fulvifomes, Fuscoporia, Inonotus, Phylloporia, Porodaedalea, Sanghuangporus and Tropicoporus, were carried out. Based on samples from 37 countries of five continents, seven new genera, Meganotus, Neophellinus, Nothonotus, Pachynotus, Perenninotus, Pseudophylloporia and Rigidonotus, are introduced, 37 new species, Coltricia tibetica, Fomitiporella crassa, F. queenslandica, Fomitiporia eucalypti, F. gatesii, F. ovoidospora, Fulvifomes azonatus, F. caligoporus, F. costaricense, F. floridanus, F. jouzaii, F. nakasoneae, F. subindicus, Fuscoporia sinuosa, F. submurina, Inonotus subradiatus, I. vietnamensis, Neomensularia castanopsidis, Pachynotus punctatus, Phellinus cuspidatus, P. subellipsoideus, Phylloporia minutissima, P. tabernaemontanae, Porodaedalea occidentiamericana, P. orientoamericana, P. qilianensis, P. schrenkianae, Pseudophylloporia australiana, Sanghuangporus australianus, S. lagerstroemiae, Tropicoporus angustisulcatus, T. hainanicus, T. lineatus, T. minus, T. ravidus, T. substratificans and T. tenuis, are described, and 108 new combinations are proposed. In addition, one illegitimate name and two invalid names are renamed, and Coltricia and Coltriciella were synonymized. The taxonomic relevance and limits of the new taxa are discussed. Photos and illustrations for 37 new species are presented, and a full description for each new species is given. Eventually, this study recognizes 672 species in 34 genera and provides a modern treatment of the poroid Hymenochaetaceae in the world. A key to the accepted poroid genera of Hymenochaetaceae is provided, and identification keys to the accepted species of 32 poroid genera worldwide are given. A synopsis description of each species is included in these keys.","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":null,"pages":null},"PeriodicalIF":20.3,"publicationDate":"2021-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42424856","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}