DNA sequence : the journal of DNA sequencing and mapping最新文献_第2页

Human interferon regulatory factor-1 gene and its promoter sequences revealed by population-based complete gene sequencing. 基于群体全基因测序的人干扰素调节因子-1基因及其启动子序列

DNA sequence : the journal of DNA sequencing and mapping Pub Date : 2008-06-01 DOI: 10.1080/10425170701606177

Hezhao Ji, Terry B Ball, Ben B Liang, Joshua Kimani, Francis A Plummer

{"title":"Human interferon regulatory factor-1 gene and its promoter sequences revealed by population-based complete gene sequencing.","authors":"Hezhao Ji, Terry B Ball, Ben B Liang, Joshua Kimani, Francis A Plummer","doi":"10.1080/10425170701606177","DOIUrl":"https://doi.org/10.1080/10425170701606177","url":null,"abstract":"Interferon regulatory factor-1 (IRF-1) plays important roles in host immunity, cell proliferation and apoptosis. The current GenBank sequence for human IRF-1 (accession number: L05072) was derived from a human placenta DNA library and reported in 1992. In one recent population-based sequence study, we observed consistent discrepancies between our IRF-1 sequence data and GenBank reference sequences suggesting that, current IRF-1 reference sequence was not representative for all populations. By complete gene sequencing, we obtained a representative full-length IRF-1 sequence from a single subject. Compared to submission L05072, our population-based data contains: 35 nucleotide additions, 8 nucleotide removals and another 12 nucleotide replacements. A single nucleotide difference was observed in the IRF-1 promoter sequence compared to GenBank sequence (X53095). These changes were confirmed in 350 Kenyans and 28 non-African donors. The accuracy of a reference sequence is crucial for downstream genetic and functional studies and this study provides more complete and accurate data on the sequence of the human IRF-1 gene and its immediate promoter region.","PeriodicalId":11197,"journal":{"name":"DNA sequence : the journal of DNA sequencing and mapping","volume":" ","pages":"326-31"},"PeriodicalIF":0.0,"publicationDate":"2008-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/10425170701606177","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40960305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 3

Genome-wide analysis of SINA family in plants and their phylogenetic relationships. 植物SINA家族的全基因组分析及其系统发育关系。

DNA sequence : the journal of DNA sequencing and mapping Pub Date : 2008-06-01 DOI: 10.1080/10425170701517317

Meng Wang, Ying Jin, Junjie Fu, Yun Zhu, Jun Zheng, Jian Hu, Guoying Wang

引用次数: 17

Molecular characterization of myostatin in black seabream, Acanthopagrus schlegelii. 黑鲷肌肉生长抑制素的分子特征。

DNA sequence : the journal of DNA sequencing and mapping Pub Date : 2008-06-01 DOI: 10.1080/10425170701517564

Liangyi Xue, Qiaoyi Yang, Zhangkui Xiao, Lu Li

引用次数: 12

Cloning and characterization of a novel PI-like MADS-box gene in Phalaenopsis orchid. 蝴蝶兰一个新的pi样MADS-box基因的克隆与鉴定。

DNA sequence : the journal of DNA sequencing and mapping Pub Date : 2008-06-01 DOI: 10.1080/10425170701606193

Bin Guo, Tian Zhang, Jinlei Shi, Donghong Chen, Daleng Shen, Feng Ming

{"title":"Cloning and characterization of a novel PI-like MADS-box gene in Phalaenopsis orchid.","authors":"Bin Guo, Tian Zhang, Jinlei Shi, Donghong Chen, Daleng Shen, Feng Ming","doi":"10.1080/10425170701606193","DOIUrl":"https://doi.org/10.1080/10425170701606193","url":null,"abstract":"The specification of floral organ identity during development depends on the function of a limited number of homeotic genes, which are grouped into three classes. Most of these genes belong to the MADS-box gene family. The PISTILLATA (PI) family of MADS-box genes plays important roles in controlling the development of the petal and stamen of flowering plants. In an attempt to understand the molecular mechanisms behind floral development in the orchid, a MADS-box gene, PhPI10 was cloned from Phalaenopsis orchid. We provide phylogenetic evidence that PhPI10 is closely related to PI-like genes of angiosperms, which are required for establishing petal and stamen identity. In addition, there is a PI-motif in the C-terminal of the putative amino acid sequence of PhPI10. Southern analysis showed that a single copy of PhPI10 was present in the Phalaenopsis orchid genome. Reverse transcription-polymerase chain reaction (RT-PCR) analysis showed that its transcription was only detectable in the top of the floral bud and undetectable in other vegetative organs. In the floral organs its expression was limited to the lip of the Phalaenopsis flower.","PeriodicalId":11197,"journal":{"name":"DNA sequence : the journal of DNA sequencing and mapping","volume":" ","pages":"332-9"},"PeriodicalIF":0.0,"publicationDate":"2008-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/10425170701606193","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40960082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 8

Mapping two genes in the purine metabolism pathway of soybean. 绘制大豆嘌呤代谢途径中的两个基因图谱。

DNA sequence : the journal of DNA sequencing and mapping Pub Date : 2008-06-01 DOI: 10.1080/10425170701607522

J L Shultz, J D Ray, J R Smith

{"title":"Mapping two genes in the purine metabolism pathway of soybean.","authors":"J L Shultz, J D Ray, J R Smith","doi":"10.1080/10425170701607522","DOIUrl":"10.1080/10425170701607522","url":null,"abstract":"Mapping genes in biochemical pathways allow study of the genomic organization of pathways and geneic relationships within these pathways. Additionally, molecular markers located within the boundaries of a specific gene sequence represent important marker assisted selection resources. We report map locations of two geneic markers from the purine synthesis pathway in soybean (Glycine max (L. merr.)), utilizing a 90 plant F(2) population created from the cross of \"DT97-4290\" x \"DS97-84-1\". Primers were designed based on sequences from annotated soybean complimentary DNA. A polymorphic, co-dominant, sequence-characterized amplified region marker was created for hypoxanthine phosphoribosyl transferase (EC 2.4.2.8). Linkage analysis placed this gene on linkage group (LG) O. In addition, a single-nucleotide polymorphism (SNP) marker was developed for a urate oxidase gene (EC 1.7.3.3). Linkage analysis of the SNP placed the urate oxidase gene on LG I. For both genes, amplicon sequence data confirmed the identification of the respective gene. Mapping these genes represents the first step in understanding the genomic organization of the purine biochemical pathway in soybean.","PeriodicalId":11197,"journal":{"name":"DNA sequence : the journal of DNA sequencing and mapping","volume":" ","pages":"264-9"},"PeriodicalIF":0.0,"publicationDate":"2008-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/10425170701607522","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40960306","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 4

Complete nucleotide mtDNA sequence of Barbary sheep (Ammotragus lervia). 巴巴利羊(Ammotragus lervia) mtDNA全核苷酸序列。

DNA sequence : the journal of DNA sequencing and mapping Pub Date : 2008-06-01 DOI: 10.1080/10425170701550599

Paolo Mereu, Marcella Palici di Suni, Laura Manca, Bruno Masala

引用次数: 18

Sequence and organization of the complete mitochondrial genomes of spotted halibut (Verasper variegatus) and barfin flounder (Verasper moseri). 斑点大比目鱼(Verasper variegatus)和棘比目鱼(Verasper moseri)线粒体全基因组的序列和组织。

DNA sequence : the journal of DNA sequencing and mapping Pub Date : 2008-06-01 DOI: 10.1080/10425170701563303

Chongbo He, Jiabo Han, Longli Ge, Zunchun Zhou, Xianggang Gao, Yunlei Mu, Weidong Liu, Jie Cao, Zhanjiang Liu

{"title":"Sequence and organization of the complete mitochondrial genomes of spotted halibut (Verasper variegatus) and barfin flounder (Verasper moseri).","authors":"Chongbo He, Jiabo Han, Longli Ge, Zunchun Zhou, Xianggang Gao, Yunlei Mu, Weidong Liu, Jie Cao, Zhanjiang Liu","doi":"10.1080/10425170701563303","DOIUrl":"https://doi.org/10.1080/10425170701563303","url":null,"abstract":"In this work, the mitochondrial genomes for spotted halibut (Verasper variegatus) and barfin flounder (Verasper moseri) were completely sequenced. The entire mitochondrial genome sequences of the spotted halibut and barfin flounder were 17,273 and 17,588 bp in length, respectively. The organization of the two mitochondrial genomes was similar to those reported from other fish mitochondrial genomes containing 37 genes (2 rRNAs, 22 tRNAs and 13 protein-coding genes) and two non-coding regions (control region (CR) and WANCY region). In the CR, the termination associated sequence (ETAS), six central conserved block (CSB-A,B,C,D,E,F), three conserved sequence blocks (CSB1-3) and a region of 61-bp tandem repeat cluster at the end of CSB-3 were identified by similarity comparison with fishes and other vertebrates. The tandem repeat sequences show polymorphism among the different individuals of the two species. The complete mitochondrial genomes of spotted halibut and barfin flounder should be useful for evolutionary studies of flatfishes and other vertebrate species.","PeriodicalId":11197,"journal":{"name":"DNA sequence : the journal of DNA sequencing and mapping","volume":" ","pages":"246-55"},"PeriodicalIF":0.0,"publicationDate":"2008-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/10425170701563303","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40959616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 8

Isolation and characterization of a cDNA encoding a papain-like cysteine protease from alfalfa. 紫花苜蓿木瓜蛋白酶样半胱氨酸蛋白酶 cDNA 的编码分离与鉴定

DNA sequence : the journal of DNA sequencing and mapping Pub Date : 2008-06-01 DOI: 10.1080/10253890701575166

Longfeng Yan, Jianguo Han, Qingchuan Yang, Yan Sun, Junmei Kang, Zhipeng Liu, Mingsheng Wu

引用次数: 1

The narQP genes for a two-component regulatory system from the deep-sea bacterium Shewanella violacea DSS12. 深海紫希瓦氏菌DSS12双组分调控系统的narQP基因。

DNA sequence : the journal of DNA sequencing and mapping Pub Date : 2008-06-01 DOI: 10.1080/10425170701605856

Hideyuki Tamegai, Sayaka Chikuma, Masami Ishii, Kaoru Nakasone, Chiaki Kato

引用次数: 4

Isolation and characterization of two distinct classes of DXS genes in Hevea brasiliensis. 巴西橡胶树两类DXS基因的分离与鉴定。

DNA sequence : the journal of DNA sequencing and mapping Pub Date : 2008-06-01 DOI: 10.1080/10425170701576768

Yortyot Seetang-Nun, Thomas D Sharkey, Wallie Suvachittanont

引用次数: 8