Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America最新文献

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Incubation Period, Spore Shedding Duration, and Symptoms of Enterocytozoon bieneusi Genotype C Infection in a Foodborne Outbreak in Denmark, 2020. 2020年丹麦一次食源性暴发中bieneusi基因型C型感染的潜伏期、孢子脱落时间和症状
IF 11.8
Daniela Michlmayr, Luís Alves de Sousa, Luise Müller, Pikka Jokelainen, Steen Ethelberg, Lasse Skafte Vestergaard, Susanne Schjørring, Sarah Mikkelsen, Carl Widstrup Jensen, Lasse Dam Rasmussen, Christen Rune Stensvold
{"title":"Incubation Period, Spore Shedding Duration, and Symptoms of Enterocytozoon bieneusi Genotype C Infection in a Foodborne Outbreak in Denmark, 2020.","authors":"Daniela Michlmayr,&nbsp;Luís Alves de Sousa,&nbsp;Luise Müller,&nbsp;Pikka Jokelainen,&nbsp;Steen Ethelberg,&nbsp;Lasse Skafte Vestergaard,&nbsp;Susanne Schjørring,&nbsp;Sarah Mikkelsen,&nbsp;Carl Widstrup Jensen,&nbsp;Lasse Dam Rasmussen,&nbsp;Christen Rune Stensvold","doi":"10.1093/cid/ciab949","DOIUrl":"https://doi.org/10.1093/cid/ciab949","url":null,"abstract":"<p><strong>Background: </strong>Microsporidia are rarely reported to cause outbreaks of diarrhea. We describe a foodborne outbreak of microsporidiosis from a workplace canteen in November 2020 in Denmark.</p><p><strong>Methods: </strong>A probable case was defined as any person using the canteen between 4 November and 13 December 2020, reporting at least one gastrointestinal symptom, whereas a confirmed case also had an Enterocytozoon bieneusi positive stool sample. A web-based questionnaire was used to collect clinical, epidemiological, and food exposure data. We performed a retrospective cohort study and tested stool samples from affected individuals for bacterial, viral, and parasitic pathogens, including E. bieneusi.</p><p><strong>Results: </strong>Altogether, 195 individuals completed the questionnaire. We identified 52 cases (65% male; median age 45 years [range 25-65]). Diarrhea (90%), fatigue (83%), and abdominal pain (79%) were the most commonly reported symptoms. Eight cases were laboratory-confirmed and had E. bieneusi genotype C. The incubation period was between 5 and 12 days, and polymerase chain reaction (PCR)-detectable spore shedding occurred up to 43 days after symptom onset. Disease was associated with consuming food from the workplace canteen on 4 November 2020 (relative risk [RR[, 2.8 [95% confidence interval [CI]: 1.4 - 5.4]) and lunchboxes containing open sandwiches (RR, 3.2 [95% CI: 1.4 - 7.2]) served that day.</p><p><strong>Conclusions: </strong>This is the second documented foodborne outbreak of E. bieneusi genotype C-associated diarrhea worldwide. Epidemiological findings advocated an open sandwiches lunchbox from 4 November 2020, as a likely source. E. bieneusi may be an under-reported cause of outbreaks of diarrhea, and testing for it might be useful in foodborne outbreak investigations.</p>","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":" ","pages":"468-475"},"PeriodicalIF":11.8,"publicationDate":"2022-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/66/88/ciab949.PMC9427152.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39743395","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Performance of a Histidine Rich Protein-2 Based (First Response) and a p-Lactate Dehydrogenase-based (Optimal) Rapid Diagnostic Test for Diagnosis of Malaria in Patients With Pediatric Sickle Cell Disease. 基于富组氨酸蛋白-2(第一反应)和基于p-乳酸脱氢酶(最佳)的快速诊断试剂盒诊断小儿镰状细胞病疟疾的性能
IF 11.8
George O Adjei, Abdul M Sulley, Bamenla Q Goka, Christabel Enweronu-Laryea, Lorna Renner, Michael Alifrangis, Jorgen A L Kurtzhals
{"title":"Performance of a Histidine Rich Protein-2 Based (First Response) and a p-Lactate Dehydrogenase-based (Optimal) Rapid Diagnostic Test for Diagnosis of Malaria in Patients With Pediatric Sickle Cell Disease.","authors":"George O Adjei,&nbsp;Abdul M Sulley,&nbsp;Bamenla Q Goka,&nbsp;Christabel Enweronu-Laryea,&nbsp;Lorna Renner,&nbsp;Michael Alifrangis,&nbsp;Jorgen A L Kurtzhals","doi":"10.1093/cid/ciab977","DOIUrl":"https://doi.org/10.1093/cid/ciab977","url":null,"abstract":"<p><strong>Background: </strong>Rapid diagnostic tests (RDTs) have been extensively evaluated and play an important role in malaria diagnosis. However, the accuracy of RDTs for malaria diagnosis in patients with sickle cell disease (SCD) is unknown.</p><p><strong>Methods: </strong>We compared the performance of a histidine rich protein 2 (HRP-2)-based RDT (First Response) and a lactate dehydrogenase (LDH)-based RDT (Optimal) with routine microscopy as reference standard in 445 children with SCD and an acute febrile illness in Accra, Ghana.</p><p><strong>Results: </strong>The overall sensitivity, specificity, and positive and negative predictive values of the HRP-2-based RDTs were 100%, 95.7%, 73.8%, and 100%, respectively. Comparable values for the LDH-based RDTs were 91.7%, 99.5%, 95.7%, and 99.0%, respectively. A total of 423 results were true in both tests, 1 result was false in both tests, 16 results were false in the HRP-2 test only, and 5 were false in the LDH test only (McNemar test, P = .03). At follow-up, 73.7% (28/38), 52.6% (20/38), 48.6% (17/35), and 13.2% (5/38) of study participants were HRP-2 positive on days 14, 28, 35, and 42, respectively, compared with 0%, 2.6% (1/38), 2.9% (1/35), and 2.6% (1/38) for LDH.</p><p><strong>Conclusion: </strong>The HRP2-based RDT fulfilled World Health Organization criteria for malaria diagnosis in patients with SCD and may provide diagnostic evidence for treatment to begin in cases in which treatment would otherwise have begun presumptively based on symptoms, whereas LDH-based RDTs may be more suitable as a confirmatory test in low-parasitemic subgroups, such as patients with SCD.</p>","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":" ","pages":"435-441"},"PeriodicalIF":11.8,"publicationDate":"2022-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39793194","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Successful Fidaxomicin Hospital Discharges of Adult Patients With Clostridioides difficile Infections Post-2021 Guidelines: Are Economic Barriers Finally Coming Down? 2021年后,非达索霉素成功帮助艰难梭菌感染的成年患者出院:经济障碍最终会消失吗?
IF 11.8
Noah Fang, David Ha, Kimberly Dong, Thomas Leung, Sydney Lee, Marisa Holubar, Lina Meng
{"title":"Successful Fidaxomicin Hospital Discharges of Adult Patients With Clostridioides difficile Infections Post-2021 Guidelines: Are Economic Barriers Finally Coming Down?","authors":"Noah Fang,&nbsp;David Ha,&nbsp;Kimberly Dong,&nbsp;Thomas Leung,&nbsp;Sydney Lee,&nbsp;Marisa Holubar,&nbsp;Lina Meng","doi":"10.1093/cid/ciab1061","DOIUrl":"https://doi.org/10.1093/cid/ciab1061","url":null,"abstract":"<p><p>We reviewed Clostridioides difficile-positive patients discharged on fidaxomicin after local adoption of 2021 C. difficile infection (CDI) guidelines. From 14 June to 3 October 2021, 80% (12/15) had copayments of $0-$35 and 27% (4/15) required prior authorization. The 30-day CDI recurrence was 7%.</p>","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":" ","pages":"519-521"},"PeriodicalIF":11.8,"publicationDate":"2022-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39775387","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optimal Urine Culture Diagnostic Stewardship Practice-Results from an Expert Modified-Delphi Procedure. 最佳尿培养诊断管理实践-结果从专家修改德尔菲程序。
IF 11.8
Kimberly C Claeys, Barbara W Trautner, Surbhi Leekha, K C Coffey, Christopher J Crnich, Dan J Diekema, Mohamad G Fakih, Matthew Bidwell Goetz, Kalpana Gupta, Makoto M Jones, Luci Leykum, Stephen Y Liang, Lisa Pineles, Ashley Pleiss, Emily S Spivak, Katie J Suda, Jennifer M Taylor, Chanu Rhee, Daniel J Morgan
{"title":"Optimal Urine Culture Diagnostic Stewardship Practice-Results from an Expert Modified-Delphi Procedure.","authors":"Kimberly C Claeys,&nbsp;Barbara W Trautner,&nbsp;Surbhi Leekha,&nbsp;K C Coffey,&nbsp;Christopher J Crnich,&nbsp;Dan J Diekema,&nbsp;Mohamad G Fakih,&nbsp;Matthew Bidwell Goetz,&nbsp;Kalpana Gupta,&nbsp;Makoto M Jones,&nbsp;Luci Leykum,&nbsp;Stephen Y Liang,&nbsp;Lisa Pineles,&nbsp;Ashley Pleiss,&nbsp;Emily S Spivak,&nbsp;Katie J Suda,&nbsp;Jennifer M Taylor,&nbsp;Chanu Rhee,&nbsp;Daniel J Morgan","doi":"10.1093/cid/ciab987","DOIUrl":"https://doi.org/10.1093/cid/ciab987","url":null,"abstract":"<p><strong>Background: </strong>Urine cultures are nonspecific and often lead to misdiagnosis of urinary tract infection and unnecessary antibiotics. Diagnostic stewardship is a set of procedures that modifies test ordering, processing, and reporting in order to optimize diagnosis and downstream treatment. In this study, we aimed to develop expert guidance on best practices for urine culture diagnostic stewardship.</p><p><strong>Methods: </strong>A RAND-modified Delphi approach with a multidisciplinary expert panel was used to ascertain diagnostic stewardship best practices. Clinical questions to guide recommendations were grouped into three thematic areas (ordering, processing, reporting) in practice settings of emergency department, inpatient, ambulatory, and long-term care. Fifteen experts ranked recommendations on a 9-point Likert scale. Recommendations on which the panel did not reach agreement were discussed during a virtual meeting, then a second round of ranking by email was completed. After secondary review of results and panel discussion, a series of guidance statements was developed.</p><p><strong>Results: </strong>One hundred and sixty-five questions were reviewed. The panel reaching agreement on 104, leading to 18 overarching guidance statements. The following strategies were recommended to optimize ordering urine cultures: requiring documentation of symptoms, sending alerts to discourage ordering in the absence of symptoms, and cancelling repeat cultures. For urine culture processing, conditional urine cultures and urine white blood cell count as criteria were supported. For urine culture reporting, appropriate practices included nudges to discourage treatment under specific conditions and selective reporting of antibiotics to guide therapy decisions.</p><p><strong>Conclusions: </strong>These 18 guidance statements can optimize use of urine cultures for better patient outcomes.</p>","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":" ","pages":"382-389"},"PeriodicalIF":11.8,"publicationDate":"2022-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39948411","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
Impact of Biannual Mass Azithromycin Treatment on Enteropathogen Carriage in Children <5 Years Old in Niger. 尼日尔一年两次大规模阿奇霉素治疗对5岁以下儿童肠道病原菌携带的影响
IF 11.8
James A Platts-Mills, Elias G Ayoub, Jixian Zhang, Elizabeth T Rogawski McQuade, Ahmed M Arzika, Ramatou Maliki, Amza Abdou, Jeremy D Keenan, Thomas M Lietman, Jie Liu, Eric R Houpt
{"title":"Impact of Biannual Mass Azithromycin Treatment on Enteropathogen Carriage in Children <5 Years Old in Niger.","authors":"James A Platts-Mills,&nbsp;Elias G Ayoub,&nbsp;Jixian Zhang,&nbsp;Elizabeth T Rogawski McQuade,&nbsp;Ahmed M Arzika,&nbsp;Ramatou Maliki,&nbsp;Amza Abdou,&nbsp;Jeremy D Keenan,&nbsp;Thomas M Lietman,&nbsp;Jie Liu,&nbsp;Eric R Houpt","doi":"10.1093/cid/ciab1046","DOIUrl":"https://doi.org/10.1093/cid/ciab1046","url":null,"abstract":"<p><p>We analyzed samples obtained at baseline and 24 months in a mass azithromycin administration trial in Niger using quantitative polymerase chain reaction. In villages randomized to azithromycin, Shigella was the only pathogen reduced at 24 months (prevalence ratio, 0.36 [95% confidence interval: .17-.79]; difference in log quantity, -.42 [-.75 to -.10]).</p>","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":" ","pages":"515-518"},"PeriodicalIF":11.8,"publicationDate":"2022-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9427139/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39676113","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Access to medicines for treating people with cryptococcal meningitis 获得治疗隐球菌脑膜炎患者的药物
J. Burry, C. P. Casas, N. Ford
{"title":"Access to medicines for treating people with cryptococcal meningitis","authors":"J. Burry, C. P. Casas, N. Ford","doi":"10.1093/cid/ciac689/6678599","DOIUrl":"https://doi.org/10.1093/cid/ciac689/6678599","url":null,"abstract":"Cryptococcal meningitis accounts for one in five AIDS-related deaths globally. WHO guidelines strongly recommend a single high-dose of liposomal amphotericin B as part of preferred treatment, but this drug remains unaffordable in most low- and middle-income countries. A proactive approach is needed from manufacturers and other stakeholders to improve access.","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":"16 1","pages":"e773 - e775"},"PeriodicalIF":0.0,"publicationDate":"2022-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81138437","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Impact of the use of oral antiviral agents on the risk of hospitalization in community COVID-19 patients 口服抗病毒药物使用对社区COVID-19患者住院风险的影响
T. Yip, G. Lui, Mandy Sze-Man Lai, V. Wong, Y. Tse, Bosco Ma, Elsie Hui, Maria Kw Leung, H. Chan, D. S. Hui, G. Wong
{"title":"Impact of the use of oral antiviral agents on the risk of hospitalization in community COVID-19 patients","authors":"T. Yip, G. Lui, Mandy Sze-Man Lai, V. Wong, Y. Tse, Bosco Ma, Elsie Hui, Maria Kw Leung, H. Chan, D. S. Hui, G. Wong","doi":"10.2139/ssrn.4112160","DOIUrl":"https://doi.org/10.2139/ssrn.4112160","url":null,"abstract":"ABSTRACT Background We examined the effectiveness of molnupiravir and nirmatrelvir/ritonavir in reducing hospitalization and deaths in a real-world cohort of non-hospitalized COVID-19 patients. Methods This was a territory-wide retrospective cohort study in Hong Kong. Non-hospitalized COVID-19 patients who attended designated outpatient clinics between 16 February and 31 March 2022 were identified. Patients hospitalized on the day of the first clinic appointment or used both oral antivirals were excluded. The primary endpoint was hospitalization. The secondary endpoint was a composite of intensive care unit admission, invasive mechanical ventilation use, and/or death. Results Of 93,883 patients, 83,154 (88.6%), 5,808 (6.2%), and 4,921 (5.2%) were oral antiviral non-users, molnupiravir users, and nirmatrelvir/ritonavir users respectively. Compared to non-users, oral antiviral users were older and had more comorbidities, lower complete vaccination rate, and more hospitalizations in the previous year. Molnupiravir users were older, and had more comorbidities, lower complete vaccination rate, and more hospitalizations in the previous year than nirmatrelvir/ritonavir users. At a median follow-up of 30 days, 1,931 (2.1%) patients were hospitalized and 225 (0.2%) patients developed the secondary endpoint. After propensity score weighting, nirmatrelvir/ritonavir use (weighted hazard ratio 0.79, 95%CI 0.65-0.95, P = 0.011) but not molnupiravir use (weighted hazard ratio 1.17, 95%CI 0.99-1.39, P = 0.062) was associated with a reduced risk of hospitalization than non-users. The use of molnupiravir or nirmatrelvir/ritonavir was not associated with a lower risk of the secondary endpoint as compared to non-users. Conclusion Use of nirmatrelvir/ritonavir but not molnupiravir was associated with a reduced risk of hospitalization in real-world non-hospitalized COVID-19 patients.","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":"34 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90859247","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 40
Neutralizing Anti-Granulocyte-Macrophage Colony-Stimulating Factor Autoantibodies in Patients With Central Nervous System and Localized Cryptococcosis: Longitudinal Follow-up and Literature Review. 中和中枢神经系统和局部隐球菌病患者的抗粒细胞-巨噬细胞集落刺激因子自身抗体:纵向随访和文献综述。
IF 11.8
Po Hsien Kuo, Un In Wu, Yi Hua Pan, Jann Tay Wang, Yu Chen Wang, Hsin Yun Sun, Wang Huei Sheng, Yee Chun Chen, Shan Chwen Chang
{"title":"Neutralizing Anti-Granulocyte-Macrophage Colony-Stimulating Factor Autoantibodies in Patients With Central Nervous System and Localized Cryptococcosis: Longitudinal Follow-up and Literature Review.","authors":"Po Hsien Kuo,&nbsp;Un In Wu,&nbsp;Yi Hua Pan,&nbsp;Jann Tay Wang,&nbsp;Yu Chen Wang,&nbsp;Hsin Yun Sun,&nbsp;Wang Huei Sheng,&nbsp;Yee Chun Chen,&nbsp;Shan Chwen Chang","doi":"10.1093/cid/ciab920","DOIUrl":"https://doi.org/10.1093/cid/ciab920","url":null,"abstract":"<p><strong>Background: </strong>Neutralizing anti-granulocyte-macrophage colony-stimulating factor (GM-CSF) autoantibodies (AAbs) have been increasingly recognized to predispose healthy individuals to disseminated cryptococcosis. However, studies have only considered patients with central nervous system (CNS) infection. No longitudinal study has captured the disease spectrum and clinical course.</p><p><strong>Methods: </strong>We prospectively enrolled adults without human immunodeficiency virus infection who had disseminated or unusual cryptococcosis. We compared the demographics, clinical features, kinetics of serum cryptococcal antigen (CrAg) titers, anti-GM-CSF AAb concentrations, and treatment outcomes between patients with (case patients) and without (control patients) anti-GM-CSF AAbs. Additional reports from the literature were also reviewed.</p><p><strong>Results: </strong>Twenty-three patients were enrolled, of whom 6 tested positive for anti-GM-CSF AAbs. All case patients with positive fungal cultures (5/5 [100%]) were infected with Cryptococcus gattii VGII. Among them, 3 had exclusively pulmonary involvement, and 1 had only musculoskeletal lesions. Patients with CNS cryptococcosis exhibited a higher serum concentration of anti-GM-CSF AAbs than those with extraneural cryptococcosis. Case patients had higher initial and peak levels of serum CrAg and longer duration of antigenemia compared with the control patients. All case patients who had completed antifungal therapy had favorable outcomes without recurrence.</p><p><strong>Conclusions: </strong>Testing for anti-GM-CSF AAbs should be considered for not only previously healthy patients with disseminated cryptococcosis but also those with unexplained, localized cryptococcosis. Recurrence after completion of antifungal therapy was rare despite the persistence of anti-GM-CSF AAbs.</p>","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":" ","pages":"278-287"},"PeriodicalIF":11.8,"publicationDate":"2022-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39577334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Post-Vaccination Coronavirus Disease 2019: A Case-Control Study and Genomic Analysis of 119 Breakthrough Infections in Partially Vaccinated Individuals. 疫苗接种后冠状病毒病2019:部分疫苗接种个体119例突破性感染的病例对照研究和基因组分析
IF 11.8
Ioannis Baltas, Florencia A T Boshier, Charlotte A Williams, Nadua Bayzid, Marius Cotic, José Afonso Guerra-Assunção, Dianne Irish-Tavares, Tanzina Haque, Jennifer Hart, Sunando Roy, Rachel Williams, Judith Breuer, Tabitha W Mahungu
{"title":"Post-Vaccination Coronavirus Disease 2019: A Case-Control Study and Genomic Analysis of 119 Breakthrough Infections in Partially Vaccinated Individuals.","authors":"Ioannis Baltas,&nbsp;Florencia A T Boshier,&nbsp;Charlotte A Williams,&nbsp;Nadua Bayzid,&nbsp;Marius Cotic,&nbsp;José Afonso Guerra-Assunção,&nbsp;Dianne Irish-Tavares,&nbsp;Tanzina Haque,&nbsp;Jennifer Hart,&nbsp;Sunando Roy,&nbsp;Rachel Williams,&nbsp;Judith Breuer,&nbsp;Tabitha W Mahungu","doi":"10.1093/cid/ciab714","DOIUrl":"https://doi.org/10.1093/cid/ciab714","url":null,"abstract":"<p><strong>Background: </strong>Post-vaccination infections challenge the control of the coronavirus disease 2019 (COVID-19) pandemic.</p><p><strong>Methods: </strong>We matched 119 cases of post-vaccination severe acute respiratory syndrome coronavirus 2 infection with BNT162b2 mRNA or ChAdOx1 nCOV-19 to 476 unvaccinated patients with COVID-19 (September 2020-March 2021) according to age and sex. Differences in 60-day all-cause mortality, hospital admission, and hospital length of stay were evaluated. Phylogenetic, single-nucleotide polymorphism (SNP), and minority variant allele (MVA) full-genome sequencing analysis was performed.</p><p><strong>Results: </strong>Overall, 116 of 119 cases developed COVID-19 post-first vaccination dose (median, 14 days). Thirteen of 119 (10.9%) cases and 158 of 476 (33.2%) controls died (P < .001), corresponding to the 4.5 number needed to treat (NNT). Multivariably, vaccination was associated with a 69.3% (95% confidence interval [CI]: 45.8 to 82.6) relative risk (RR) reduction in mortality. Similar results were seen in subgroup analysis for patients with infection onset ≥14 days after first vaccination and across vaccine subgroups. Hospital admissions (odds ratio, 0.80; 95% CI: .51 to 1.28) and length of stay (-1.89 days; 95% CI: -4.57 to 0.78) were lower for cases, while cycle threshold values were higher (30.8 vs 28.8, P = .053). B.1.1.7 was the predominant lineage in cases (100 of 108, 92.6%) and controls (341 of 446, 76.5%). Genomic analysis identified 1 post-vaccination case that harbored the E484K vaccine-escape mutation (B.1.525 lineage).</p><p><strong>Conclusions: </strong>Previous vaccination reduces mortality when B.1.1.7 is the predominant lineage. No significant lineage-specific genomic changes during phylogenetic, SNP, and MVA analysis were detected.</p>","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":" ","pages":"305-313"},"PeriodicalIF":11.8,"publicationDate":"2022-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8513403/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39337910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 16
Disease Progression in Patients With Nontuberculous Mycobacterial Lung Disease of Nodular Bronchiectatic (NB) Pattern: The Roles of Cavitary NB and Soluble Programmed Death Protein-1. 结节性支气管扩张(NB)型非结核分枝杆菌肺病患者的疾病进展:空腔NB和可溶性程序性死亡蛋白-1的作用
IF 11.8
Sheng Wei Pan, Wei Juin Su, Yu Jiun Chan, Mei Lin Ho, Jia Yih Feng, Chin Chung Shu, Jann Yuan Wang, Hao Chien Wang, Chong Jen Yu, Yuh Min Chen
{"title":"Disease Progression in Patients With Nontuberculous Mycobacterial Lung Disease of Nodular Bronchiectatic (NB) Pattern: The Roles of Cavitary NB and Soluble Programmed Death Protein-1.","authors":"Sheng Wei Pan,&nbsp;Wei Juin Su,&nbsp;Yu Jiun Chan,&nbsp;Mei Lin Ho,&nbsp;Jia Yih Feng,&nbsp;Chin Chung Shu,&nbsp;Jann Yuan Wang,&nbsp;Hao Chien Wang,&nbsp;Chong Jen Yu,&nbsp;Yuh Min Chen","doi":"10.1093/cid/ciab929","DOIUrl":"https://doi.org/10.1093/cid/ciab929","url":null,"abstract":"<p><strong>Background: </strong>In patients with nodular bronchiectatic (NB) nontuberculous mycobacterial lung disease (NTM-LD), risk factors for disease progression have not been clearly investigated. The roles of cavitary NB and soluble programmed death protein-1 (sPD-1), an immune-related biomarker, in the disease course of NB NTM-LD remain unknown.</p><p><strong>Methods: </strong>Patients with NB NTM-LD were enrolled from 2 medical centers in 2014-2020. We identified cavitary NB, measured sPD-1 levels, and analyzed factors associated with cavitary NB and predictors for disease progression of NB NTM-LD.</p><p><strong>Results: </strong>Of 120 cases of NB NTM-LD, 87 (72.5%) were caused by Mycobacterium avium complex. sPD-1 levels were lower in 13 (10.8%) patients with cavitary NB than in noncavitary patients (P = .020). Over 1.41 ± 1.43 years of follow-up, 12 (92.3%) patients in the cavitary and 66 (61.7%) in the noncavitary group developed disease progression (P = .032). In multivariable analysis, body mass index (BMI [kg/m2]; adjusted hazard ratio [aHR], .895 [95% confidence interval, .811-.988]), sputum smear grade (aHR, 1.247 [1.014-1.534]), cavitary NB (aHR, 2.008 [1.052-3.834]), and sPD-1 (per 10-pg/mL increase; aHR, .889 [.816-.967]) were predictive for disease progression. Notably, sPD-1 showed a dose-dependent association with disease progression (sPD-1 ≤23.5 pg/mL; aHR, 3.306 [1.664-6.567]; sPD-1: 23.6-53.7 pg/mL; aHR, 2.496 [1.390-4.483]) compared with the reference (sPD-1 >53.7 pg/mL).</p><p><strong>Conclusions: </strong>Patients with NB NTM-LD and low sPD-1, low BMI, high smear grade, and cavitary NB were at high risk for disease progression. sPD-1 was low in patients with cavitary NB phenotype and dose-responsively associated with disease progression.</p>","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":" ","pages":"239-247"},"PeriodicalIF":11.8,"publicationDate":"2022-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39671979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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